>gi|99078010|ref|YP_611268.1| sulfate/tungstate ABC transporter periplasmic substrate-binding protein [Ruegeria sp. TM1040]
MKLSHTLGATFAALTFATSTFAADQSIIVQSTTSTANSGLYDHLLPLFEDKTGIQVNVVAVGTGQAIKNA
QNCDGDVLLVHAKAAEEKFVEAGFGTARTDLMYNDFVIVGPEADPAGVAGQSDVQAALSKISDAGALFAS
RGDDSGTHKKEVSLWADAGLDPTSASGEWYRETGSGMGATLNAGIGMGAYVMTDRATWISFGNKQDYTIK
VEGDDDLFNQYGVIPVNPAQCPSVNVEPAQTFAAWLVSEEGQDAIAAYEVSDQQLFFPNAPKN
>gi|99078011|ref|YP_611269.1| excisionase/Xis, DNA-binding [Ruegeria sp. TM1040]
MAAPQADCDMTDLDLPDHEYLTVPELAELLRLKERKIYDLAASGEVPCSRATGKLLFPANEIREWIARAK
SGGEPAPVHRPQILLGSHDPLLDWAIRQSQSGLASYVDGSMDGLERFLQGEGIAAGLHLRDEKSGQWNVP
IVARMATRQNAVLIHFASRKRGLVYRDPDLDLASLNEISNLRFAPRQPGSGTDQLFRDLAAEARLDLKKV
DLVDVARSEDEAVESVRRGLADVTFGLEAVAKSYGLKFTPLIDEEFALLVDRKAWFEPAFQCFLTFCQTD
ALAQRAAGMGGYNVSALGRVRWNA
>gi|99078012|ref|YP_611270.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSDTSLSRQPLEVRFRGGGFAPRNRRWVGLAVFVVLIALVEWGTRSGFISALTLPKPSDVFATLVELWQS
GLFFQHMIPSLTRLAVGAALGASVGVGVGVLIGLFSYIRAGLVPLMAAIFPIPKIALLPLFVIWFGIDEG
SKYALIAFGTFTPTVVATYGAVDNVDRSLIRMGQSFGLSWLSIVRKIVLPGAMPGILSGLRISLAIAIIL
LVAAEMLGAQYGIGAYILEAGSLYDLERLFAGVVILSLLGVLTSGTIGMIERRLLNWRS
>gi|99078013|ref|YP_611271.1| ABC transporter related [Ruegeria sp. TM1040]
MDIRLDGISHFYGETEVLRDISLDVASGQIVCLVGPSGCGKSTLLRFLGGLERPSSGRVLQLGTPPEGCL
NPLTYVFQDFALLPWRSVRGNISLVLEDHGIRGARAEEIIADVLARTKLTDFANALPKQLSGGMKQRVAI
ARALAVKPAVMLMDEPLSALDSQTRELLMDDLIALWERQPFTAVYVTHNLAEAVRLGHKIVVLSRRPGQI
REVVEIEKPLSERGYADVDLEQIQKHLWTLMRDEARAADEELLDV
>gi|99078014|ref|YP_611272.1| sulfonate ABC transporter, periplamic sulfonate-binding protein [Ruegeria sp. TM1040]
MTFNRRQTLALMGAAAASGLAAPALASGKKPVVGALSLTSHSGSFIALERGYFKEAGLDVELKFFQAAQP
MAVAIASGDVDFGVTAISGGLLSLADKGAVKVIGGALSEEPGIDGQKILASDAAYQAGLTSVAALDGKRY
GMTTAGSSFHYMGSKIAGAEGGTPQFVPLQKVGAIIGALKSGQIDAWSIVPHIAKPLAGSGAVHIIGNVA
DYLPNYQVTTVFTSAQNASKERGLTESFLKGFGMGVSDYNATMVDKQNGEDAINEMVDLIHKYVYTDRPR
EKAAPSIINGSMRLNKDAAINVASVSDQLAWMQSEGLVDAGITLETFLDTSYVDVIGA
>gi|99078015|ref|YP_611273.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MLFSRRSSDNETVVAMLASAIRRDISFGVLRPDEKLKIEALRQRYGGSNHSMRETLRMLVAEGMVEATNQ
RGFRVTSATEDDLADILMMRLEVEKLALERAIAHGGVDWEAQIVAAHHQMMRAENQLNQAPDDATALGWD
EACRGYIMALVSACGSPRLIEMTGRFYDQSRRFRLARLREGRIDFDARRDRQEALKAAVMERDTKRALRL
LEEDTQADLSG
>gi|99078016|ref|YP_611274.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKKQIAITALTLAATFGTAQAETINVGMSGGYFPFTFVKLDELQGFEVDVINAIAAETGDEVNFVTMSFS
GLIGALESGRIDTIANQITITPEREAKFAFSQPYVFDGAQVVVKRGNEDSITGPSDLSGKSVAVNLGSNF
EELLNELPNASEIDIRTYESNIAQDTALGRVDAFVMDRVSSAQLIAESPLPLALAGAPFSEIRNAMPFRT
NAEGIALRDKFDAALTTLKEDGTLSEISHKWFGTDITVAE
>gi|99078017|ref|YP_611275.1| amino acid ABC transporter permease [Ruegeria sp. TM1040]
MWDLVPILLGYVPLTLFMAVIGMACALVLASILAVERVFQIPVLDAFVRLFISFFRGTPLLVQLFLFYYG
LPQVLGFLGSIDGVTATIMGLTLHFSAYMAESIRAAILGVDRSQWEAAQAVGMTQGQMMRQIILPQAARV
AAPTLVNYFIDMIKGTSLAFTLGVTELMGATQKEAAGSFLYFEAFLVAAAIYWILVEALSFGQRHLETYL
NKAHAR
>gi|99078018|ref|YP_611276.1| ABC transporter related [Ruegeria sp. TM1040]
MSNTKGISISGLSKSFGESTVLRDISLEIQPGERVVIIGPSGTGKSTLLRCLNFLDRPDRGVIRVGDLSV
DAANASRAEILALRRRTSFVFQNYALFANKTALQNITQALITVKGMPKSAADARARTILQDTGLLDKADA
YPAALSGGQQQRVGIGRAMALDADLMLFDEPTSALDPEWVGEVLDLMRRVAEQGQTMLIVTHEMQFAREI
ADRIIFMSGGDVIEQGPPDQILSDPQDPRTRAFLRRVQ
>gi|99078019|ref|YP_611277.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MTRINRPAADAEEFLLHSEVENEHDWRALPETFDVDDFAPWEEEWDLEEEEEEEEDPEHIDNSQFFQTDG
SGNEGLIDNLLKLTGRDNAAANANGNANGLFKLVLGGDGDDSLTGSRDDDVVMGGRGHDSVEGGEGNDTL
MGDEDGQTGSDATPLVLNINNLVSQSYYDGASAGIGDTAVYRDVAFLEDGTAVWGRLVLVNASDPNMTID
LSGDRGAEISITGNGYGDTAEFRLEFFDPTTGEPVNINSTATFNDLDQNYYNYDVEAVSLDTDEYTAFGT
SDGTSLNVTNQDGSVRAAGTEANNPDDQDAWFSAEFEGRDFITFTLEARSTISGFTLSGDLIEDGVYVPI
EQGNDTLLGGLGSDVIMGQGGNDSLDGGDGDDSIDGGEGDDVMFGGTGSDVLIGGLGGDTISGGDGDDLI
DGGEGDDFLSTGLGNDTLLGGEGNDTLHNSAGDDSLVGGVGDDSIVATEGNDTLEGGDGNDTLYAGVDND
SLDGGLGNDSMFGEAGSDIMFGGGGMDYMEGGIGNDTIDGGDDDDTILGGDGDDLIYGGAGNDSLTTGAG
NDTLFGGEGDDTLRNSVGDDSLSGGTGNDSIVATDGNDTLDGGSGNDTMYGGNDNDLLIGGTGADLMYGE
ADADTFRIEDNFGNDTIVGGEAGNDQDVVDLSYMTGPVTVTYTGPEAGTITDGTDTIQFSEIEELILTDQ
DDVVDARNDTAGVQINAGSGNDSLTGGSGDDVFTGGAGDDLISLTASGGVDQITDFDINDTDVDGFYNDQ
LDVSGLTGGSGDGGAVRTIDVTTSDDGFGNALLTFPGGEQLVLQGVTPAQMTTHDQLFAAGIPCYTPGSR
VITARGEVPVEEIREGDLVQTADNGLQPVIWVGHRRLSASDLARHPHLRPVLLRPGGIIANDRAMLVSPQ
HRFLLPSDGASRSESFVRARLLLELDPGHVHAEERASGVCYIHLMTEAHQVIFVDGCATETFWPGPEALR
GLSPRDKREIFDLFPELIPALSNRGEIGRKLVSSRYGALARQDLRRKDIAQMEPFHPRQSRRA
>gi|99078020|ref|YP_611278.1| PfkB [Ruegeria sp. TM1040]
MILCCGEALIDMIPGTTETGQAAFVPHTGGAVFNTAIALGRLGRRVSLLSGVSRDLMGRKLEAALRESGV
SEGHLIRSDRPTTLAFVELQNGHAKYAFYDENTAGRLITVADLPKLGAEVEALFFGGISLACEPCADTYA
SMLKRYGAERAVVLDPNIRPGFVPDEARYRARLKEMLAQADMVKVSDEDLAWLMPEQSDPQAQAAALQAW
GPAVVLVTRGGDGAMGLLPNGESVTVAAERAEVVDTVGAGDTFNAGVMARLDESGALNKEALRKLDASTL
AEALRWGAKVAAVTVSRAGANPPWRSEL
>gi|99078021|ref|YP_611279.1| hypothetical protein TM1040_3043 [Ruegeria sp. TM1040]
MKIDLNQSDCLVLQGTTRVISSVLGLALLVALGLALTAAISGAIAGWAIALAVVVVGGGILWLVYHQTEV
VFDRTHNTLTLRKTMLHGTRVDTIPLDTVLQADVDLRRNERSNNRLHASYTYRLCVITRAATHRHRVPLS
HGYTTSKRSLLTAQEINDWLGVPNAPIARGLSMADIAEVMQTLGLRKSA
>gi|99078022|ref|YP_611280.1| hypothetical protein TM1040_3044 [Ruegeria sp. TM1040]
MSQFTETTQVSLSVRLKNAFKGIGLGISFIGIALYFLFWNEGNAVRTARALDEGAGQVVSLDSATLDPTF
EARLVHISGPAKLKAALVDAALGVEAPAQTVRLERIVEQFAWIEETQTWTDTKLGGGQDKTTTYTYRMDW
TETPASGAAFRVSEGHMNPPMPIRSKILRQQDATVGAYRVSEEISDLGGATPVILTETQAAEIAEALPLS
QTAKLVAGQVVFGETVARPALGDIRLRYQAARIDSASVIGLQRGNALVPYIAQNGRKIHLLTEGIKTAEE
MFETAQRANTAKTWMLRIGLLVLLFLGFKALFGVVDVLASILPVLGWVSSSVTSLISVALAFCLGGLTMA
TAWFYYRPIVSLALIAVALAVGLVGALWLRSSAKHAPHPPGTT
>gi|99078023|ref|YP_611281.1| hypothetical protein TM1040_3045 [Ruegeria sp. TM1040]
MKHLTLSIALLITAGAAQAGRFCELDGTEVFSCTFKDGTRGVEVCNAIWAEGSKVAYGFFKSDGTVEKEI
LQDMATLEAAPWNGLGAFMSESVTFDGGGGYSYEVWSGSERAADATQIGGINVLRDGALIADLSCDTGTV
QSDLSGLIEIIEAAE
>gi|99078024|ref|YP_611282.1| hypothetical protein TM1040_3046 [Ruegeria sp. TM1040]
MSRTSQWLTCVFVAISWGYAAAAQSVCEGAVVFQCATEAAELREQITVCAKDQSYSLTRHALSTGEMYYD
TPLIADANTTWFLWSEEDQVQLEIGFWSTDLAEPVTLHAQLPWDDANETIADTGEYSMWLQSPHWRAEVD
QTLCAPATIYADTDALWPAQEMRGPIGAFFSKDAIIPRVETAGRARVLSTKGGREGVPVYAAARPSAATP
VWWMLQPGETVDLLDRVGDFVAVALPTNGMSDCTLRPERLGQPYAGPCATGWVDAALLERVQ
>gi|99078025|ref|YP_611283.1| hypothetical protein TM1040_3047 [Ruegeria sp. TM1040]
MTRTILPLLTVRQSARPPTFERKRIMKSCLATFVLGWLCSAGIAQAFCDDILATQVLCLTEEAEEIKVCA
SQHPEMGTPVLSLHLSPSVSNAPITRLAQDIPFGMTLGTGGVPWDIHEFSFVHDGGRAVLSLKTPIDSRE
TSEAEIWLDFFGRGTAPDRSLHCMQPALRAELDTLLSLRGISVNMLRTGPSAESAGYYQPHQPIVGAAPY
GSADCREVAGILSNEGTENGQIALYAAPHAKAAILGYVFPSDLGAAFECAYENGYSGLIWSDPEKGDGRG
GYVAALDFEARMAACALTPEAWPPNLAYWGTCSSAWVKESNVAGFEG
>gi|99078026|ref|YP_611284.1| hypothetical protein TM1040_3048 [Ruegeria sp. TM1040]
MLDTILLAAQAFSLAFMAGWLTIGAMENLLHPFLNETYTAEVMDMARMREDYPEAYHFVAYRRVTSPGLR
RALFRCIVVWEFAATFALWIGVGGLGLAAAGSLAPDVAVAIALVATMMFIATWCGFLIAGNWFCYWFGHE
GGQNTHFQMTLWGMLNAVLLVAGAASLGV
>gi|99078027|ref|YP_611285.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTHFTRTGQPLPASLTRQAPEMAADPVSRREFLATACSFGATAATAYAMMGLNAPAQAAANAQMGGTVRI
QQQLVAMRDPRKFDFNSLATFTRGWLEYLVQYNSDGSFTPILLDSWEISEDATEYSLNVRKGVTWNNGEP
FTADDVANNIARFCDGTVEGNAMAGKMQVMIDPETNQILPGVVEVTDSHSLKLKLPKPDISLIASFADYP
AAVVHPSFEEFSMLDNPIGTGPYLPEFYSVGDSAALVRNPDHTWWNAGNGGYMDRVEFIDFGADPAAFFA
GADADEYDVNYDTEGDYMDAYDSLDGWTKHEVTTAATVLARCNQLAEVNGKAVYADARVRRALAMAVDNE
VVLEIAYGGQGRAAENHHVSPVHPDYADIGAPVRDPEVAMQLLEDAGMSDFEHELVSLDAAFWKATGDAI
AAQLRDAGIKVKRTVFPTSTFWNNWAKYPFSVTNWNHRPLGIQTLALAYRSGQGWNESGFANAEFDALVE
EALATADPEARSKIMAKLEQIMIDEGVIIQPYWRSLYNHSKSNLKGAEIHISNELYPQYMYWEA
>gi|99078028|ref|YP_611286.1| taurine catabolism dioxygenase TauD/TfdA [Ruegeria sp. TM1040]
MTTIETKPLTPCFGVEVSGMTLSEVSKGHDFARLRDLFEEHSALLFRAQEISNEEHMALAQLFGPIEDRK
ADERKPGEAFEVPEVSNVQKDGTTSGEMDLHTLNLKSNFLWHSDSTFLPTPALTNILIGRVVTTEGGATE
LASTRAAWAAMPEELKSRIRGRGIWHRYSHSRRKISPELAKLPMFNKWPDQHWSAVWPNPVNGREGLYIA
SHAFKVDGYDEAESQELLDELMAFCTQPEFTYAHQWNVGDVLIWDQRAVLHRGTPWPYEQPRTLSSICVS
VTEADGIGSIRMPA
>gi|99078029|ref|YP_611287.1| FAD linked oxidase-like [Ruegeria sp. TM1040]
MTDTPTDRPSFDWANFAASLSPVEVIEEPVLIKKRSRDFFWYSPVLNAQLKKCFGDLVAVPHTKDEMRHC
LQRAYEADVPVTLRGGGTGNYGQAVPLQGGLILETTKMNRILEIGDGYVRAEAGALMADVNAALIAQGWE
MAMFPSTQDIATIGGFVAGGSAGIGSIANGALREKGNIMQLKAFSLEAEPQEHVFDAEDALQLHHAWGLN
GVITEVTLRTVPHRNWIGCMATFDSYEACYAAGYALATSTQIGRKLASTVEARIVAYFPRLKDHLREGKH
LLVSLVPAEDMEALRALIKAQGGHLDLAMSDAERQAAKLPHVFEFAYNHTTLQVLKADRAATYQQIGVPD
PADARAVAAVGAALGNDVWQHHEFARVDGKIVAFDLPIIWFTDEARLREIDKTYEAHGHSVADAHTYFVE
GGGLKNADYRHLAWKKRMDPKGLLNPGKSRAWEEVKHLPAEEIEAKAKG
>gi|99078030|ref|YP_611288.1| amidohydrolase [Ruegeria sp. TM1040]
MSHAPGAQSRLSASRLTEARLPGVAVPAALVASADRFGGQPQGEHLVGDLVLRNGRAERLEAATVPPRRL
VLPKLTEPHVHLDKCHTIYRMDGVGGGLEDAISAQALDRETWTADDIRARAGRGLGELLAAGCSAVRSHV
DWGSGRDPAQAPLAWDILRELAQDASDAVIVQRAALTGADRMADIGYARACAARVAQSGGVLGSFVLNQP
GRKEGIANIFRVAEDMGLALDFHVDEGLARGLDGLEMIADAALATRFGGPVLCGHACSLMNRSDEDVRRI
AEKLARAEISVVALPTTNLYLQGRNNGTPDRRGLTRIHELAAAGVNVVLGADNVRDAFCPLGSHDPLATL
SLAVLAGHLDPPFGDHLPMITTGARRALGLAPVTVDGAAIGDLQLFDALLVTDILGSRSAPRPLTDDLPG
ASL
>gi|99078031|ref|YP_611289.1| creatininase [Ruegeria sp. TM1040]
MSIQGYWAELKTTEFQTLSQDCIAVLPLGATEQHGPHLPLSVDTDLVQETAARMLANLDPAQSVLVLPAL
AITKSNEHNRFSGTLSLSPETLLAVLREIGASVARAGIERLVLFNGHGGNTAILQVAARELRISHDLIVV
VCSWSGFAEADGLFDPAAYAVDLHAGDSETSAMLASHPGLVDMSRAKTFGTAMEDWAGEFRFIGLTGEPA
TPGWIADDLNPDGVCGDAVAATAEKGEAMLASAGRNFARFLAEFAHFDHRRAP
>gi|99078032|ref|YP_611290.1| glutamine amidotransferase [Ruegeria sp. TM1040]
MAQRVLLIRHGDEPEDDRVATWLAANGYEAVTRKPFAGDSLEDVGEVAASIVYGGLFDVFETEKYPFLRD
EDRWIAQCLERDVPLLGICQGCQQIARHLGAWAGAPEREFFEFGYYPILPTETAGAFLDAPLRVAQAHYH
TFDLPHGVVRLAGNEAYPNQAFRYGDKVYGFQFHAEVTPAGFRRWQSSKVNVYGRPGVQDIQTQNRLMAA
HDAAQAQWFNGFLDRFLGQAA
>gi|99078033|ref|YP_611291.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MKALNPVSIRPPFAAYAHGTEIPAHKRVVVTSGQLGIRADDSIPESSYEQAFICFENIREILREGDMAPS
DIAHISAYVTSREHMAGYMRARDEFLAGTGRVPSSTLLIVSGFTREEFKVEVEVMAAI
>gi|99078034|ref|YP_611292.1| hypothetical protein TM1040_3056 [Ruegeria sp. TM1040]
MKSTPEHSLNIDLTPFEMIGGFAIYTANRPARLRRLWRRNRLSNALVRGFASFTEGREPPFTFAPFTLGQ
APAMGWAAPI
>gi|99078035|ref|YP_611293.1| hypothetical protein TM1040_3057 [Ruegeria sp. TM1040]
MDDKISTSAELAEAAALPCHREVHTNPDAPEALKDVPEEMQKVPAPEQKSPARWAYERLILYIQNFEKTL
DGEHEVAMGFAGGDAGVLRIEGMGYFDPDIVTFYGSDERGGKTQLVQHVSQLNVILRAMSKPKPEEPAKR
IGFRLVAELEEHA
>gi|99078036|ref|YP_611294.1| beta-lactamase-like [Ruegeria sp. TM1040]
MGEAIEVAEGALWMRLPLPMKLDHVNVYAFDEGDSWTVVDTGMSSNKTRRIWEQLMAGPLGGKPVRRVVV
THHHPDHIGNAGWFQSEHGAELVTTRTAWLFARMLTLDVQESWPEETLAYYRSAGMDPEVYDTRKADRPF
NFADTVYPMPLGFTRVQQGDVFRMGGRDWDIHMGNGHAPEHATLWSRDDNLVLTGDQVLSSISPNIGVYA
TEPEADPLAEWLEACERLAALARPEHLALGGHKLPFTRLPLRMRQLIDNHHGALERLMEFLETPKSAAEC
FPTLFKRTIGPGEYGLALVEAVAHVNHLYRTGQVTRTRRSDEAWVYQRR
>gi|99078037|ref|YP_611295.1| acyl-CoA dehydrogenase-like [Ruegeria sp. TM1040]
MSYRAPVSEYQFLLQQILGYDQITATERFAEADDDLMTAILTEAGKMSDEVMAPLQRGGDLEPARLENGV
VRTSPGYGDGYKAIAEGGWIGMSADPEFGGMGLPMSLTTAVNEMMSGACLSLQLAPLMSQGQIEALEHHA
SDALKELYLPKLIAGEWAGTMNLTEPQAGSDVGALSSKAEDNGDGTYAVSGQKIYISWGDNDFTENVCHL
VLARLPDGVPGTKGISLFLVPKYLPDENGNPGKANSLKVVSLEHKMGLHGSPTCVMQYDGATGWLVGKEH
GGMAAMFTMMNNARLGVGGQGVGVAEGAYQHALAYALDRKQGKTPVEGGTGTIVDHADVRRMLMEMKADV
YAARAIMLACAGAIDMGTATGDAEWKTRAAFLTPIAKAFGTETGIRVAEQGVQVHGGMGFIEETGAAQFY
RDVRVTAIYEGTNGIQAMDLVARKMMDGGEMAHRLIDEIEEQAERARPTHPNMAEAVWQACETLREATEW
LVEANMQDRFAGAVPYLMAFARVLGGHYHLAAALADKGGAREKLARFYIKRMLPQHAAYLIHAREGAAGA
FALTAEELAS
>gi|99078038|ref|YP_611296.1| translation factor SUA5 [Ruegeria sp. TM1040]
MSPAMTQASSETEALTAAPEAIARAAELLTAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPL
IAHVADVRAARRLVQWNDWAEAMATAFWPGPLTLVLPLRPDHNVSPLVTAGLDTLAVRVPAKACSRELLA
AVGRPVAAPSANPSGRISPTTADHVRAGLGGKIAAILDDGPCGVGVESTILGLAGAAPILLRPGGLAAED
IEHALGCTLMTRAEADPLTAPGQLMSHYAPNASVRLEAQDFSPDEVSLGFGPGDFDLNLSPSGDLNEAAA
NLFGHLHHLDALGRPIAVAPVPERGLGIAINDRLRRAAAPRDS
>gi|99078039|ref|YP_611297.1| phage SPO1 DNA polymerase-related protein [Ruegeria sp. TM1040]
MESELDYWSAKALLEWQVELGATEAMMDTPIDRYGLEDQKPKPARAADTPPTPVKPKTVDPVAEAAKLAK
TAQALPSLRAALEQFEHCDLKRGARNLVFSDGQAGARVMIIGEAPGRDEDLQGKPFVGRAGQLLDKMLDA
IELSREKNVYITNVLPWRPPQNRDPLPAEISMLVPFLERHVALAEPDILVLMGNISCQAVLGKRGITRLR
GTWSEAWGKPVIPMFHPAYLLRQAHAKRQAWADLLELRARLNSLN
>gi|99078040|ref|YP_611298.1| metallophosphoesterase [Ruegeria sp. TM1040]
MKILAFSDLHLVEELAADLVTASVEADLVIGAGDFCNTRQGLARAMELLAGIAAPMVVVPGNAESAEELR
GCALSFMTVLHGESAEIEGLRIFGLGGGIPETPFGDWSFDLSDRAAARELAKAGENTGGIDILITHSPPK
GAGDTTSAGLSIGSESIHKAITTLQPKLAVYGHVHDSWGYRGQIGATQCANLGPTPNWFEVS
>gi|99078041|ref|YP_611299.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MIALSTLAAFVPAALALNITPGADMMFCLGQGLKSGARPAIAASFGVAAGGMVHVALAGLGVAAVVAAQP
ALFDLIRWLGVAYLLYLAWGALMRPGGAQPTGQPAQAARAFRAGLMVSLTNPKVILFVLAFVPQFIRPEA
GSVLGQFLVFGAIIGIGGVFVNGGVGVFAGRARTLFAEDGSAARWMRRITGGIFAGLALRLALLERA
>gi|99078042|ref|YP_611300.1| molybdenum cofactor biosynthesis protein B [Ruegeria sp. TM1040]
MSRIDDSKDFIPVRIAILTVSDSRSLDEDRSGQVLVDRLKAAGHHLADRNILPDERDEIADQLRQWCANP
EVDVVISTGGTGLTGRDVTVEAHRDVYEKEIDAFGTVFTIVSMQKIGTSAIQSRATGGVAQGTYLFALPG
SPGACKDAWDEILQKQLDYRHRPCNFVEIMPRLDEHLRRK
>gi|99078043|ref|YP_611301.1| secretion protein HlyD [Ruegeria sp. TM1040]
MRFLRHSVMGLFLAGLTAALLLFALHLVRSAVQESLAEERRAPPARERIFAVNVVTATLGEERPELVGFG
HVESRRTLELRAAVSGRVIALADGFQDGGRVTAGDTLVEIDKADAEAALARAKADMMDAEAERRDAGRAL
DLARDELETAQMQADLQERAYQRQVDLKTRGVGTEAAVEAAELTATSARQSVITRRQAVSQGEARIDQAQ
TLVARAQIALDEAQRDLEDTTLTAPFTGTLQSVNLVEGRLVSANEILAELVDPNQLEVAFRVSTAQYARL
LDDDGRLIPAEVIVTLDAAGADIRATGRLARASGAVGDGQSGRLIYARVEDNAGFKPGDFVTVRVQEPAI
ADLIRLPASAMDSRQTVLVLGEDDRLQEVPVELVRRQGDEILLRASELEGRQVVTGRTPLLGAGIKVRPL
TKGAENALKAADPDLIELTEERRATLKAIVSDNGQMPSEVKTRVLAELDQPKVPAALISRIEDNRGG
>gi|99078044|ref|YP_611302.1| acriflavin resistance protein [Ruegeria sp. TM1040]
MATTPIQKASGILSYFTRHRTAANLLLMVLLVLGAAAIPNMRAQFFPDVIVESVDVSVVWEGAGPEDVDS
AIVQVLEPALLAVDGVEDTRSASREGRAVIDIDFEPGWDMARATDDVQNAVDAITTLPEEAEEPEVERAV
WRDRVTDIVITGPIGAQQLGILADELILRLFEVGVTRTTIRGVAAPRTIIEVPSSQLIAHDITLAEIAAV
IAAEVEINPAGEIEGANARVRTGTQKRTPEELEAVVLRSEADGSALTIGDMASIRVEGVDRQRSYFVGDN
RAMSIRVDRSDQGDAIRIQRQVEEVVAEMNLSLPQGVEVSLIRTRAEAISGRLDILVDNGLMGLGLVVIL
LFLFLNARIAFWVAAGIPAAMFAAIALMYIGGLTINMISLFGLIITLGIVVDDAIVVGEHADFRARRLGE
PPMVAAENAARRMAMPVFAATLTTVIAFFGLTAIGGRFGELIADIPFTVIAVLAASLVECFLILPNHMAH
ALVHRSKEHWYDAPNRVVNRGFRWCRDQLFRPLMVGVVRARYVVVAGALVLLASQMALFIKGDVTWRFFN
APERASVSGNFAMVEGATRADTLAQMREFQRMVDVLGAEYEERYGRNPVDFVMAEVGGNTGRGLAGTETK
DSDLLGSIAIELIDADLRPYSSFAFVGELQKRVVQMPLTEVVSFRGWRSGPGGDALDVQFYGADVTTLKG
AAEDLKTALTRYPEVSAVEDNLAYDKEELVLDLTPQGQALNFTIDSLGRALRQRLNGIEAATYPEGPRSA
QIRVELPEGELTADFLERTQMRAPSGIYVPLSDIVTVSQRTGFSTVRRENGVRLISVTGDISEDDPVQAE
AIMEALETEILPKIAEERQVEFRLSGLSEQEDEFLSDARTGLILCLTGIYLVLCWIFSSWTRPIVVMAII
PFGLVGTIWGHYLWDLPMSMFTVVGLLGMTGIIINDSIVLVSTIDEYAQERGLIPSIIDGAADRLRPVML
TTLTTVLGLAPLMYETSQQAQFLKPTVITLVYGLGFGMFLVLLVVPALVAIQADVARPFQALKRAVAAGP
HRVAHRLRALILLGAALQAVWLGLTLGWTLLTGALPAAVGTALPFVTQMDPLRAALMLGLGGVSVLALLV
YVIGAVGALRGTSRQTS
>gi|99078045|ref|YP_611303.1| NUDIX hydrolase [Ruegeria sp. TM1040]
MTDPTRRPILGALGVVCANIDGADCVILVKRKNPPNAGTWGFPGGHVELGETAAAAAARELLEETGVVAE
PGAQLMTLDVIPRAADGTVEGQYFLVATLCHYISGDPVPYDDALEARWVPVAQIEDQGLELLDRVAELAR
RAQEVWRDVPRSAPTAPIT
>gi|99078046|ref|YP_611304.1| hypothetical protein TM1040_3068 [Ruegeria sp. TM1040]
MACLACLGLASASLARENLADLVSIEVLDGGPTKDGRYMGALHLRLAQGWKTYWRAPGDAGIPPRFDWKG
SRNVANLRITWPTPELFLTSGFRTIGYHDELVLPIEITPKYAGAPIRIKGRMELGLCKDVCIPSELRFDH
RADLSAGRHPAIAAALAARPYSAAEARVRGVTCRLSPTPYGMKVSARISMPSAGREEYAVIEGGASLVAT
ETKSWREGRELVAEAELLPAQDGPIAVDRSALRFTVLGTSHAVDIRGCTSG
>gi|99078047|ref|YP_611305.1| hypothetical protein TM1040_3069 [Ruegeria sp. TM1040]
MQQLLLRVILSEAAAGHSRGSDMKLTGKLLIAMPGIGDPRFDNSVVFLCSHGQEGAMGLIVNKLAPGVVL
KSLFDQLDITSKPAAATEPVYFGGPVETQRGFVLHSDEYISTVNSLPVCPGLSMTATLDVLEDIAEGRGP
ERYLVMLGYAGWGPGQLEDEIAQNGWLTADTEPDMVFTDLADGKWEAALASLGVTPLNLSMDAGRA
>gi|99078048|ref|YP_611306.1| aspartate carbamoyltransferase catalytic subunit [Ruegeria sp. TM1040]
MQPPSFDQPHLLGIEPLRPHEITAILDLAEDYVALNRQTEKHSDALAGLTQINMFFENSTRTQASFELAG
KRLGADVMNMAMQASSIKKGETLIDTAMTLNAMHPDLLVVRHPHSGAVDLLAQKVNCAVLNAGDGRHEHP
TQALLDALTIRRAKGRLHRLNIAICGDVTHSRVARSNLILLGKMENRIRLIGPPTLVPQQFAEFGAEIYD
DMREGLKDVDVVMMLRLQKERMDGGFIPSEREYFYRYGLDAEKLALAKPDAIVMHPGPMNRGVEIDGTIA
DDIKRSVIQEQVEMGVAVRMAAMDLLARNLRAARQKQAS
>gi|99078049|ref|YP_611307.1| hypothetical protein TM1040_3071 [Ruegeria sp. TM1040]
MQDVIEIPKGARDQVLIFALDMPVEQTKFLRDEDGALAQVLGLPTIEMTQVEIFPVEDLEGLGLLGYLRE
GMGVSEADLSEHGMALDGLSGWVLVLRARAFDGAATRLTPARSVTLVARLGEVKTDWSAPSTIPSAAAQP
TLRTPPREARNRARRIGASLFAVVMLLICLAIWGLVT
>gi|99078050|ref|YP_611308.1| dihydroorotase [Ruegeria sp. TM1040]
MTTLFLNARLIDPETGTDAPGSLLVQRGKILARADQSDKEMFLADNGLRTKDVQMVDCNGKCLAPGIVDI
GVKVCEPGERHKESYKSAGLAAAAGGVTTIVTRPDTSPCIDSPETLEFVTRRAQADAPVNVLPMAALTKG
REGREMTEIGFLLDAGAVAFTDCDHVVTSTKVLSRALTYAKSCGALVIAHPQEPGLSQGAAATSGKFAAL
RGLPSVSPMAERMGLDRDIALLEMTGAKYHADQITTARALPALERAKANGLDITAGTSIHHLTLNELDVA
DYRTFFKVKPPLRSEDDRLAVVEAVRSGLIDVISSMHTPQDEESKRLPFEEAAAGAVALETLLPAAMRLY
HAELLDLPTLFRAMALNPSRRLGLASGRLSAGAPADLVLFDPDAPLVLDRFKLQSKSKNTPFDTQRMQGR
VLATYVAGEPVYRKDA
>gi|99078051|ref|YP_611309.1| acyl-phosphate glycerol-3-phosphate acyltransferase [Ruegeria sp. TM1040]
MLPALETTLPLLLFWGGIGYLLGSVPFGMVITRAFGLGNLREIGSGNIGTTNVLRTGSKAAAAATLLLDG
GKGAAAVLLARALAGEDAAQLAGLLAFLGHCFPVWLGFKGGKGVATFLGLMLALAWPVGIACCLTWLGVA
VLRRISSLAALCAAVAAPVWCLLLGAPQAAVLSALLALVILWRHRENIARLRAGTEPKIGQK
>gi|99078052|ref|YP_611310.1| hypothetical protein TM1040_3074 [Ruegeria sp. TM1040]
MTKTTSFTKSLLGGLAFSVALATSSLAAGVDVNASSTGLAMQGYDPVAYFTEGEANKGSYKLTSTFDEAT
YWFTSEENKELFEANPEAYVPAYGGYCAFGAAMGFKFDGDPHQWKIVDDVLYLNLSKDIQERWVEDIPGY
IEKADVNWETIEDAAPAELLQ
>gi|99078053|ref|YP_611311.1| hypothetical protein TM1040_3075 [Ruegeria sp. TM1040]
MERFFISAFEKLVGVIVVLLLLVVLGGVVVAFIEPSAGGLLPALGVLLGGTLYVILIGGSLYLALGIYNN
TKRTAEAMERMAGK
>gi|99078054|ref|YP_611312.1| glutamate--cysteine ligase [Ruegeria sp. TM1040]
MSIPQSGGGPIESHAQLAAYMEAGCKPRDDWRIGTEHEKFGYCKDTLKPLPYEGTRSILAVLEGLRDRHG
WEPVTEGGKLIGLTKDMANVSLEPGGALELSGAPLETIHETCDEVNTHLREVKDIADEIGVGFIGLGAAP
IWQHDEMPLMPKGRYQLMNDYMERVGTMGRAMMRRTCTVQVNLDFASEADMVQKLRVALALQPVATALFA
NSPFFEGKPNGLKSWRSHIWRHLDDARTGMLPFVFEEGMGFERYADYALDVPMYFVYRDGKYINALGQSF
RDFLKGELPALPGETPTLSDWADHLTTAFPEARIKKYMEMRGADGGPWRRLCALPAFWVGLMYNQSALDA
AWDLVKGWDAETRENLRIEAAVKGLQAEVGAIKMHDLAREVLAISEAGLKARARQGAGGLVPNETHFLNA
LRESVESGKVPADELLDRYNGDWNGDLTRIYADYSY
>gi|99078055|ref|YP_611313.1| hypothetical protein TM1040_3077 [Ruegeria sp. TM1040]
MSFIRPEARAALWRWRELLGALALLLLGLRWALWGIGLTQVTGWACVTLAVVLAVVGAQRMRFRLGSGGP
GVVQVTEGQISYFGPLTGGAVARSEIETLRLDHTARPSHWVLEQPGQPPLAIPVTATGAEALFDVFASLP
GLKTERMLSELHHKGPHQVVIWQKSPESHQAYRLH
>gi|99078056|ref|YP_611314.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MAWRAAEPSDLAWIEALLFAHIEGAMFLIGNLRDHGFGSDHSHGLTLWVREARDGVFGITNSGSVMMMAP
GATRRDWQEAGQLLAGRDVTAVLGKAMQARRFIAANDIGDHPCQLDRDDPGFVLDLRDVSVEMRPEEALV
PLAEAPRGLVEGWRAAYEVEVLNAAPDAARDKARHDIATYIARDSHRVLTVQGEPVAMSGFNTAFDEAVQ
VGGVYTPPMLRGRGYARRVVGRHLLEARERGARQGVLFAAGKDAARAYRALGFQPADAFALVLFSTPAQI
CAGRVEDVR
>gi|99078057|ref|YP_611315.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria sp. TM1040]
MSAKVRLYVDHPLGAGQTVPLDRDQAHYLFGVMRLSVAARVALFNGRDGEWQAEVAEAGKRGGVLACLEQ
SKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATEFTNSERIRQDRLQAHAVEAAEQCGGTY
VPEVAELQKLPSLLDHWPAERQLMFCDEAEIGQRLFLDVAQVEGSAGAAGPWAILIGPEGGFSDAERKRL
HAMPQAHVVSLGPRILRADTAAVAALTLWQQRLGDW
>gi|99078058|ref|YP_611316.1| 4-hydroxybenzoate polyprenyltransferase [Ruegeria sp. TM1040]
MQGQSPTPDGQVADAVKDNWVDIYAPAWTRPYLRLSRADRPIGTWLLLLPCWWGLALAMIAGQDARWEDL
WIFVACALGAWLMRGAGCTWNDITDRNIDGSVERTRSRPIPSGQVSIKGALAWMALQSLIAFGILLTFNQ
AAVAMGILALFPVAIYPFAKRFTWWPQIFLGLAFNWGAMLAWVAHTGHLNWPAVVLYVAGIAWTLFYDTI
YAHQDAEDDALIGVKSTARLFGTNTPTWLRRFIVATVSLMALAIIMAVQPAASVLALALSLCAPWAMGWH
MTWQLRAFDADNNDRLLSLFRLNRDTGLIPLIFLGLALFA
>gi|99078059|ref|YP_611317.1| OmpA/MotB [Ruegeria sp. TM1040]
MRISSFLIPTAAFAGAAGLSLVVAGFAATALENNSEIVVRRTLDKAGFTWAEVAADGLRVELSGEAPDEA
TRFAAISEVGSVVDAARIIDQMEITPSKGIAPPRFSTEILRNDAGISIIGLIPSDSDHRALVKKLGAIRG
APQVTDFVETADYPMPKGWTDAMSYALKALALLPRTKISVEAGAVQITAIADSPEAKEELETELNRMLPP
NVHVTLDIAAPRPVISPFTLRYVLGPEGGRFDACSAESEESRSRILDAARDAGLERQADCTIGLGVPSAN
WSRAVEVGLEALTSLEQGSITFSNGDVTLVAAQGTPEALFDRVVGELENALPQVFVLHAVLPEPEETTAD
IIPEFTATLSPEGQVQLRGRLSDNAQKRTVDSYAKARFGSDTVYVATRNSPDLPGVWPIRVLAALDALAQ
LERGSVTVTPELVAVRGMSHVENASAEIARMLSQKLGEAEDYDLDITFEKPPEPEDKLMAPQLCEAELAA
IQRADKIAFEPGSATVAADSARVIDKIAKLLQQCGEIPLEIQGHTDSQGREEMNQNLSQARAQSVLNALR
ARRILTGSFVARGYGEDNPIASNDTEEGREANRRIEFRLIESALPQDDAETAEAESDAQSADAEAAPAGD
ADAQTPETPPAAAAAPEEDTDGQ
>gi|99078060|ref|YP_611318.1| hypothetical protein TM1040_3082 [Ruegeria sp. TM1040]
MSRTEFILTTAIILFVAFAMGWFANWLVHRFTRVRQSDVADLDRMSQELHEAEETRDQAITYLQQREAEL
TNQLSQTEAELRAAMDGLREARHETEELRNQLRGAG
>gi|99078061|ref|YP_611319.1| hypothetical protein TM1040_3083 [Ruegeria sp. TM1040]
MPAKAPLRTMSNDPLLDELRAHEEQVWDALVRGDADLDASLLCQSFLGVYGDGFADKSAHVGQLAEGATV
QSYALTDLRARALGSDHAMLSYRARFMRHRRNQAEDMYVTSIWQRTEGGWINIFSQDTAAGEATD
>gi|99078062|ref|YP_611320.1| phosphatidylserine decarboxylase [Ruegeria sp. TM1040]
MNMIGTFIKPMHPEGRKFVAIFAAVTFGLFLLTPILGWIGVGLTVWCYYFFRDPERVTPARPGLVISPAD
GVVSLIEPAVPPAELGLPDVPLTRVSVFMSVFNCHVNRAPVAGEVTAVAYRPGKFFNASLDKASADNERN
SLAIRMEDGRDLAVVQIAGLVARRIVCFVKPGAQLGRGERFGLIRFGSRLDVYLPEGVSPQVEIGQTMIA
GETVIAELGTGVHTDQNKGELHG
>gi|99078063|ref|YP_611321.1| CDP-diacylglycerol--serine O-phosphatidyltransferase [Ruegeria sp. TM1040]
MGDDEEHHPPSHLTLVQLIPNMLTIAAICAGLSAIRFGIEGNYVLAVQLILAACVLDGLDGRLARLLNSD
SKMGAELDSLADFVNFGVAPALVIYFWALEDLRGFAWITVLIYAICCVVRLARFNVTAKADPSEDKDASG
AYFTGIPSPAGALLAMLPMFLSFAFADAPLLPDVVICLHLILVGWAMIARFPVWSFKTAKISRNNVKFFL
VGFAVLGSAVLIYAWITLVVLCLAYLIVVLWSILSHRISDDRKGH
>gi|99078064|ref|YP_611322.1| phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase [Ruegeria sp. TM1040]
MTGKDIEVKIEAVESSYARWAPVYDRTFGAVTDVGRRRAVSFINNRKGHVLEVGVGTGLSLPHYGPDVRV
TGVDFSAEMLAKAQRKVDALDLDGRVDLQRMDARELAFENATFDTIAAMHVLSVVPEPERVMAEIARVLK
PGGKVVITNHFAKDTGVLAGLERVAAPMANLIGWHSDFKMDTILQEPSLQVAELRKLPPLGMMTFLVLEK
RVN
>gi|99078065|ref|YP_611323.1| hypothetical protein TM1040_3087 [Ruegeria sp. TM1040]
MPDIDIVRSDNDPRQSDHGIRTDTASRGVDLEGAKITVTYTDGTTETLTWKALDPYTAGGATGDNIDMYF
GYDWHQLTTTKPLASLKIDLAPANSVFDTTFASDGNPNDPSTPGSKEGFPFKVSPDYEDLGGTITATYSG
IAGLDGNAPVGDLYTTMTLDFTSLPGGGLQGDLVWNSDIDTLTGPFASSVTATDDFVSISGNGSEVIDIL
GNDAGAGKGPLTISHIAGTAISAGESVTLASGEVITLNPDGTLSITNDSPEDETNSFTYTVVDEAGNTAT
GTVTVDTKLTAPPCFVAGTLIDTEAGPIAVEDLTVGMQVMTRDHGPQPLRWIGRSTRLARGRNAPVLIAR
NALGHHGQIALSPNHRVLIRSELADLQFGQPEVLIKAKHLVNGDSIRILSDGTQVCYVHILFDRHEIVRA
NGLDSESYHPGAETLGAFDADTRAEILDLMSDWQEYGPAARITLKPRECALLQLNRH
>gi|99078066|ref|YP_611324.1| lipoyltransferase [Ruegeria sp. TM1040]
MVEWITSDGLVSYEEATRFMEERAEAIAAGEAEECIWLLEHPPLYTAGTSARIEDLTDPDRFPVHVTKRG
GQYTYHGPGQRVIYVMLNVAERGKDVRCFVRQLERWVILALEEFNVTGHIRDGRVGVWVERPEKPLTPAG
AVAEDKIAAIGIRLRKWVSFHGISINVEPDLSHFSGIVPCGISEHGTTSLVDLGLPVTLADVDVALRRTF
DLAFSEEAAPSCDLD
>gi|99078067|ref|YP_611325.1| multi-sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MNSSLASFFARTPAATLDSCDSEPIHLSGLIQNTGALIVQDPETGLIIGASENAHLFLGRPVEAILGFSL
TEIAPDIADELAEPDNGQNIVHEILESQRNVDDCVYDTICHVHDGRRVIEFVLNEAPSASQARKRMRMSG
PACAQIMAAPTFDAAMQIACNTVRTLTGFSRVKIYRFLPDWSGETIAESNDGSLPSYLGMHFPSGDIPKQ
VRALMEIVPFRFVGRVDDDNIAIRALTSGAGDIDLTWAMNRSVSAMHTAYLRNIGAGSSFSCSLMDKGKL
WGLIACHSGGSMVVPADSWSLVQEIGTALMLKFDQTERMATADMISRLRRIENEFAAEMRRTGDVEDVIK
TLVPILQKFLRADGFAFQFGTNMHTSGEVPPENFIRKLVQWSKTNMEDVDQFQTASLHADLPEAKHHIDT
ACGVLVQPIVMHRVCQLLWFRGPITRRVAWAGRPDAQAKIDPKTGVTLGPRQSFDKWVEEHRDQSLPWEE
AELEAAREIFKEFLDIITSQLLLKEENSSLRKFAHTAAHDIKGSLRGISAALGWMEEDDFEKTTTREHQE
LALAQARKLQNLTESLLEMTLLREQPTAKFSKTDLKKLAEDTKLLIKYDLEQAGGQINVGALPDCTVASD
LITRLLLNLCGNAIKYAKSDQPLQIDITGEVLDGEMNRLIVTDNGPGIESKHAEKIFEQATRLHDGGEGC
GFGLAICTEIAKSHHGQIYLDTSYSDGARFVFEWPCEDPT
>gi|99078068|ref|YP_611326.1| heme oxygenase [Ruegeria sp. TM1040]
MTKAGEIGGRERLRLATDPQHQEMHHHPVMACLLAPSVTLAQIETASAVSLGAAREIERARAASGEWADF
SLSAYLQRLHHGLPAHLQTQHAPPVALPTDRYAALGGLYVIHGSAFGATLIANKIRAHLDIDPAPYFPAI
DKTIWRRLVATLNAMTEEEADAAVRGACQAFLLFKRIADRQTLQHTLQVTPFEALHQPQPVDAAINAAGA
IAAP
>gi|99078069|ref|YP_611327.1| nitrogen-fixing NifU-like [Ruegeria sp. TM1040]
MFIQTESTPNPATLKFLPGQTVLDAGTADFPSAEAASKSPLAQRIFAVSGVTGVFFGNDFVTVTKDDSVE
WDHIKPAVLGAVMEHYQSGQPVINEGQQQASGHAEHTGEDGEIVNQIKELLDSRVRPAVAQDGGDITFHG
FDRGVVYLHMQGACAGCPSSTLTLKMGIENLLRHYIPEVTEVRPVAV
>gi|99078070|ref|YP_611328.1| peptidase M22, glycoprotease [Ruegeria sp. TM1040]
MPAKAPLILGFDTSSAHCAAALLRGETVLAQRREEMARGQAERLMPLIEEILAEGEATWSDLDAIAVGIG
PGNFTGIRISVSAARGLALGLDVPAIGVSSLEAQAFGQNAPVISSVDARRDHLYLQVGDQPPGLYTLETL
PPLLDGAMCVGQQASEIAARCNGTVAEPRYPVAEAIARVAASRLGAPDLPAPAPLYLRDADAAPSREQPP
ALLND
>gi|99078071|ref|YP_611329.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MTDSTMDDSPAALAATHRAAFTQSRPWTEAEFGDLLSDRFTYLTGDARAFAVVREIAGEAELLTIATHPD
EQRQGHGRKIMQMWMHNAATRGATDAFLEVAQDNLAAQALYSACGFGLVGIRKAYYPRPEAEAADALLMK
RELP
>gi|99078072|ref|YP_611330.1| basic membrane lipoprotein [Ruegeria sp. TM1040]
MTLMKSLMGAAAAVALTAGSALANPAVIFDLGGKFDKSFNEAAYNGAQRWADETGGKYLEIEMKSEAQRE
QALRRFAESGANPIITTGFAMSAPLEEVAGDYPDTKFVTIDGWVDAPNVHVVSFSEHEGSFLVGMLAAEA
SKSGTVGFIGGMDVPLIRKFACGYAQGVKAVNPDATIISNMTGTTPAAWNDPVKGSELTKAQISQGADVV
YAAAGGTGVGVLQTAADEGILSIGVDSNQNHLHPGKVLTSMLKRVDVAVYEILKAGEDLEIGKVTLDLSD
NGVGYAMDENNAELVTAEMQAAVEDAKAKIISGELKVHNYTSDDSCPVLNF
>gi|99078073|ref|YP_611331.1| ABC transporter related [Ruegeria sp. TM1040]
MTAPAIELKGISKAFGPVQANKDISISVQPGTIHGIIGENGAGKSTLMSILYGFYKADKGEIWIKGQKTE
IPDSQAAIAAGIGMVFQHFKLVENFTVLENIVLGAEDSGLLMPSLSRARKELKELEEEYELYVDPDKRID
EIGVGMQQRVEILKALYRKAEILILDEPTGVLTPAEADQLFRILDRLRSEGKTIILITHKLREIMEYTDT
VSVMRRGQMTATVKTAESSPEQLAELMVGRKVLLRVDKVPATPGKPILEIEKLSVVDSAGVQRVKDIDLT
VRAGEILGIAGVAGNGQSELLEVLGGMREGTGNIRVNGQPLPLSGKGSDARARRHAGIAHVPEDRQREGL
IMDFHAWENVAFGYHREDIYKKGLLLDNARLRADTEAKMEKFDVRPPNPWLAAKSFSGGNQQKIVVAREI
ERNPDLLLIGQPTRGVDIGAIEFIHQQIVELRDQGKAILLVSVELEEILSLSDRVAVMFDGKIMGERPAD
QTDEKELGLLMAGVAGEAA
>gi|99078074|ref|YP_611332.1| inner-membrane translocator [Ruegeria sp. TM1040]
MEKMPKWADVVLIPLISLLLAAVISAIVILLIGESPIEALNLMVNGALGSTYGWGYTLYYATNFLFTGLA
VAVAAHAGLFNIGGEGQAMIGGLGLALVCLYIPFPHWSIALIFAALGAGIFGAAWAAIPAYLQAKRGSHI
VITTIMFNFIAAAVLNYMLVNALKPKGAMDPSTAKFPESAQLPSLHEILAPIGIEFSKSAPANVTLFVGI
AACIVVWGLIWHTPLGHEIRALGKSERGAVYAGISPVRTVMITMLISGALCGLMATNNVMGEAERLVLNA
TEGAGFIGIAVALMGRNHPFGVFLAAILFGFLYQGGAELALWTNIPSELIVVIQALVILFTGALDNMVRM
PIEKIFLAFRKENA
>gi|99078075|ref|YP_611333.1| inner-membrane translocator [Ruegeria sp. TM1040]
MDFLTLIQVFDSTVRMATPLLLACLAGLFSERAGIFDIGLEGKMLMAAFFSAAVAAVTGNVWLGLLAGIG
ASLLLSGLHGLASITFRGNQLISGVALNFLASGLTVLIAESWFRQGGRTPSLLTEGRFNGIELPFAIGPS
DAEAAGRPLSEMIAEANVIQQIWSELISGHSILVYVAVLMVPLTWWVLFRTRFGLRLRAVGENPAAVDTA
GVSVRSLRFAAIGIAGVLCGIAGAYLATGLQAGFVKEMTSGRGYIALAALIFAKWRPWHALGACLLFGLL
QAVALRFQSIQLGGVSIPVQVMDALPYVLTVVILAGFVGKAIPPRAGGQPYVKER
>gi|99078076|ref|YP_611334.1| hypothetical protein TM1040_3098 [Ruegeria sp. TM1040]
MQLRPMGCRVAACPCPSASRRRPRDMNIYLPIAEVAVNAFLILGLGGMVGVLSGMFGVGGGFLLTPLLFF
IGIPPAVAVATGANQIVASSVSGVLAHLRRRTVDLKMGAVLQLGGLIGAGLGVAIFNYLKSLGQIDLFVT
LCYVVFLGIVGGLMFIESVNALRKSKRGGAPKRRQRGWVHSLPFKMRFRTSGLYISVLPPVAVGLFVGML
TAIMGVGGGFIMVPAMIYLLGMPTKVVVGTSLFQIITVTAATTMMHAVTNQTVDIVLAVLLLIGGVVGAQ
FGTRIGMLLKAEQLRILLALLVLLVCGKLALDLLLEPSELYSLSPLREVR
>gi|99078077|ref|YP_611335.1| hypothetical protein TM1040_3099 [Ruegeria sp. TM1040]
MSLLRLISFTICATLSALAATAEEVVLGLSQDRVAITATFDGSEILIFGAVKRESPIATEAPLEVVVTVA
GPSETVLVRRKDRELGIWVNTEAVTVDSAPSFYAVATSAPFSEALSDTEDLRHKISINRAIRSVGATVEG
AQSFTDALMRIREEKGLYSLQENTVAVDEQTLFRTALRMPADLIEGHYRTRIFLTRAGRVVSQYETVIEV
NKVGMERFLFNLSREQPAIYGLLALVIAVVSGWGAAAGFQLLRAR
>gi|99078078|ref|YP_611336.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MTKSILVTGASSGIGRAVAELFLAEGWMVGLLARRVEKLAEVAEGQRCAVVLPADVTDPAAVEAAFDRFC
TEAGRIDVLFNNAGIFTPPGTIDEIALEDWFAAVNVNLNGMFLSARAAFARMRHQTPRGGRIINNGSIAA
HVPRPGTVPYAATKAAITGLTKSLSLDGRAYDIACGQIDIGNARTPMVADLAQRMAEANPEAPPMDSFDV
GDAARSVLHMAELPLEANVQFMTVMATKMPYIGRG
>gi|99078079|ref|YP_611337.1| ATPase [Ruegeria sp. TM1040]
MTQAPSSAPALQFSDDQAQAFDSLSEQLRKAGVDLGEDLLHPPRGETGVSAVIGKAGSGKTLLLSEFYKA
LAAAGVEVVSGDYESRKKGEKRTLAILAPTNKAASVLRLRGVPATTIHRILYTPVYDPEYERIAEWLAGE
GDRPEIEGLSDEALARAEAFYATNKSIPGALAAAGLRGSDFITGWKRREEPLDIGFVDEASMLDDRQFED
LKEIFPTLVLFGDPAQLAPVNQSGSMVFDDLPEERKLILNRIHRQEADNPILDLAHALADPQMGFEDFER
MVEEKARQDERVVWGQRVEVDLMARSPVLVWRNNTRIRLINAFRAVHGAPEDQLLEGEPLICDGLELPLK
HRKKRLDLEARGLIKGAQVIYLGPGRKPGFSRLHVMGAEDPQVSAASIVKIEKPEEEEPFIPFAARMGAT
FLHGAAVTIHKAQGSQWETAQVFAPDIYAAARMGRVEAGQPLWKRLAYVAITRAQERLIWVVRNRLAKPT
GPLPVEDLKQVAAPTLTLEAQDAEASL
>gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MVRRHSFNAILELIESSANLEEIGEVLAQFRNLVDLDHVSYRWVDRSGSVSGCSTLPTAWQDRYSAMSYH
RIDPVVIGCYTAFHPVDWRDLDWSARLASAYRKDSIAFGVGNQGYSVPVRGPAGQYAILSITKSCEGEVW
DKFTQKHSRDLILLAHYVNRRALEFEVSYYPTPEQPLSMRESEALSLLAEGMSRARAAEAMAISEHTLRV
YIEGARSKLQAQNTTHAVARAVTMGLIAT
>gi|99078081|ref|YP_611339.1| hypothetical protein TM1040_3103 [Ruegeria sp. TM1040]
MLDRFVNRVFATLGLQTQYMSALLWFRVSIRTHRKGMAESPTTPLLEKGISYLFINIVYKENESTLIYDK
CYRQNEFYQGLWMIGHVFIRVFSILAPHLRLARLVMQMTQARKRGGKTGVKKTPAPKGGCFSQEALSRHA
>gi|99078082|ref|YP_611340.1| crotonyl-CoA reductase [Ruegeria sp. TM1040]
MALDTQDSMMTYDAPQKDLYEMGEIPPMGYVPKKMYAWAIRKERHGEPDTAMQQEVVDVPTLDSNEVLVL
VMAAGVNYNGVWAALGQPISPFDGHKAPYHIAGSDASGIVWAVGDKVKRWKVGDEVVIHCNQDDGDDEEC
NGGDPMYSNSQRIWGYETPDGSFAQFTNVQAQQLMPRPKHLTWEESACYTLTLATAYRMLFGHEPHDLKP
GQNVLVWGASGGLGSYAIQLINTAGANAIGVISDESKREFVMSLGAKGVLNRKDFNCWGQLPTVNTPEYA
EWFKEARKFGKAIWDITGKGNNVDMVFEHPGQATFPVSTFVVKKGGMVVICAGTSGFNCTFDVRYMWMHQ
KRLQGSHFAHLKQASAANKLMIERRLDPCMSEVFSWADLPEAHMKMLRNEHKPGNMSVLVQAPKTGLRTL
GEVLDA
>gi|99078083|ref|YP_611341.1| glycerol-3-phosphate acyltransferase [Ruegeria sp. TM1040]
MTQTVELPLWAFVLILLFAAVTFASHFLFPSVRWFFRRRLERAVARLNQRLERPIEPFKLARRYDMIQRL
IYDPQVAQAVSDHAAAKGIPENVAFEEARRSAREIVPSFSAFTYFSFAIRAARLLSNAIYRVRLGSYDEG
LLKAIDRDSTVVFVMNHRSNMDYVLVTYLVAKRSALSYAVGEWARVWPLSRLIRAMGAYFIRRKSQNALY
RAVLAAYVRLATRAGVTQAMFPEGGLSLTGVMAPPKHGLLKYIVEGSAEVGKDVVFVPVALNYDRVLEDK
ILIRAAQTGDRRFRARIGAVMVRLLRQFWLWITGRYQHAGQAAVSFGRPLSVSELPTGAGEDRARLLSTE
LMRRIGEVIPVLPVPMVSYLLLQRGAMSEAALVQALRETVASMPLAAIHMPEHAHGAAVQSAILQMRRRK
LIRTSGGMITPERSQTDMLRYYANSIAHLVPVALEPPPDSEAISAPAKDYSASAGS
>gi|99078084|ref|YP_611342.1| methylmalonyl-CoA mutase [Ruegeria sp. TM1040]
MSLAQKDRSEAPNRDRPWLIRTYAGHSTAAASNALYRANLAKGQTGLSVAFDLPTQTGYDSDHVLARGEV
GKVGVPVGHLGDMRALFDQIPLEQMNTSMTINATAPWLLSLYIAVAEEQGADVSKLQGTVQNDLIKEYLS
RGTYICPPAPSLKMIADVAEYCYQNVPKWNPMNVCSYHLQEAGATPEQELAFALATAQAVLDELKPRVPA
EDFPAMVGRISFFVNAGIRFVTEMCKMRAFVDLWDEICRTRYSVEDPKFRRFRYGVQVNSLGLTEQQPEN
NVYRILIEMLAVTLSKKARARAVQLPAWNEALGLPRPWDQQWSMRMQQILAYETDLLEYGDLFDGNPVVD
AKVEVLKEGARAELATLEGMGGAVASIEYMKSRLVDSNAERLNRIEAGETVVVGVNKWTEGEPSPLQTED
GGIMTVDPAVEAEQIARLNAWRASRDDAAVAAALEGLRAAARDGTNIMPASIKAARAGVTTGEWAEEMRK
AYGTYRGPTGVSASMSNKTDGLDDLREAVNAASDQLGRRLKFVVGKPGLDGHSNGAEQIAFRARDCGMDI
TYDGIRLTPQELVQSAQRDSAHVIGLSILSGSHLPLVEDTLAQLRAAGLENVPVVVGGIIPEEDANMLLD
MGVSKVYTPKNFELNSIMKDIVELAKTNTSV
>gi|99078085|ref|YP_611343.1| histone-like nucleoid-structuring protein H-NS [Ruegeria sp. TM1040]
MSIDLNKMSRKDLLQLRKDVEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPAKGAARKSKASPK
YRNPENPDETWTGRGRKPHWVHTALSNGVDISDLEI
>gi|99078086|ref|YP_611344.1| purine nucleoside phosphorylase [Ruegeria sp. TM1040]
MTVHIGSQKDDFAETVLLPGDPYRAKWAAETFLSDVRLVNEVRGMLGYTGMWNGHRVSIQGSGMGMPSLS
IYANELIRDFDAQTLIRIGSCGGMQPHVKVRDVIIAMSATSVSTPSRTIFRDVNFAPTADWTLLRNAVTA
AEAQGLSPHVGGIYSSDTFYDERPDLNEQMVRHGVLGVEMEAAELYTLAARYGRRALAVLTVSDHLQTGE
ALPSEERERSFGEMVEIALSAAFA
>gi|99078087|ref|YP_611345.1| hypothetical protein TM1040_3109 [Ruegeria sp. TM1040]
MTDTDFPIPADAETRRAVPPVICYPNETLPKPDLDLYRAARQGAEKIAEVTVPPREAATFEVGAGQFFRI
SSIEGPQVGDLNLWNRHDISERFFSGKTRALHGTHVTTAERLWSNLPYMRPMATIIADTLEWYGIDAYGG
SVHDVIGTRCDPYTGNLLQGSQYHHCCHSNLTRALADHLGLSLEEAEPHVHDVLNVFMCTGFTRDTGQYF
MKASPVRPGDYLEFFAEIDLLGAMSACPGGDCSAEHSSDTAACYPMLVEVFAPRDGALQGWKSPALNGYD
RSHGR
>gi|99078088|ref|YP_611346.1| ornithine decarboxylase [Ruegeria sp. TM1040]
MTVFVTGPAARDDVTFVPRHLQYIANTRFERPTLVIDSEAVARQYMGLARGLGRARIHYAVKANPAPEIL
RRLCALGSNFDAASRAEIEMCRAAGASAARITFGNTIKKPADIAFAHALGITHFAADAVEELEKLAEHAP
GAHVCIRILVEASSADWPLSRKFGCAPDMAVGLMDRCVALGLVPHGLSFHVGSQTRKPEMWEPILDQVAD
VWQAARAAGHDLKLLNIGGGFPAGYRDAVMAPQDYASEVMKRVNARFPDAAEVMAEPGRGLVAEAGAIAA
EVMLVSRKHDSDLHRWVYLDIGKFSGLAETMDEAIRYKITTDRDHETMGACVLAGPSCDSADVLYEKQPV
QLPLGLTSGDRVVIHSCGAYTTTYASIGFNGFPPLDVVVL
>gi|99078089|ref|YP_611347.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MISIINMHQKNLNAIDLNLLKVFSALAAERSVTKAANSVGLSQPAVSHALRRLRDLMDDELFIRSTDGMQ
PTERCRELAPAIDASLKMLQDAMTVKDDNDPANLRATYRLGMNDLFSTLLVPGLTARVAKQAPNVSLRFL
HSMAINQNVDDAYSDLERGRIDLTVIQDFDTPSRFDRELLGASEFVCVARAGHPVFQPGLSMEQYTSLGH
IMFTTLDAEYSRIDEALSKMGIRRRIELRVPHYSAALSATALTDLVYTVPRILAQHAEQAFGLQVSELPF
EAPVRKIFQVWHKTRTKDFGHQWLRNVVSDVSQLSGIVP
>gi|99078090|ref|YP_611348.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MSVRSMLLASALALSSALPSFADKANDTLVAAFNKEVQTLDGLYSTSRENLILSYLTSDQLVELNLDTGE
YEGALAESYTWVDDRTIDFTLREGLTFHDGSPVMVEDIVYSFDWIANADSKTKRGAFIRGWFESAVAIDD
RTVRVTAKQPYPLMLRDIAVFVLTRKAGSYGDGNPDALTQNFVGTGPYKISEFAMGAGVQLERYDGYYTG
GPKAAGSIEKIVLRPIPDWGTVTAELLSGGVNWSFNVPDDTAKDLGGLPMVDHVSGVSTRVAFLVLDAAG
VSDAEGPMTNKLVRQALNHAVNRKEIVEFLVGGSGRVVHSTCNAGMFGCDVEITEYDYDPEKAKALLAEA
GYPDGFEFDLTAYRERPIMEAVAADLAEIGVIANINFVKLSALSKSRAEGQLEAFQNAWGFYATPDLGAI
SNYYVEGSNRNLHQDAEVQGWFKAALETVDQDERADLYAKALQKIADEAYLLPIFQYSQNYVKSVDVNFA
APADGLPRLNELSWK
>gi|99078091|ref|YP_611349.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLRFILKRLALGLSVALTVSLATFLMLNLAADPAAMVAGEDATQEAIEQIRVQYGFDRPLYVRFFEWFGS
ILVGDFGDSYYWKKPVFDLLIERAPVTITLALGALSVTVLVGLPLGVLAALKPNGWLDRFALSFGTAAQA
VPNFWLGLILIILLGVMFPIFPVSGDSTWKHFILPCFVLGTSAVPQVLRLTRTGMIEVLGSDYIRTARAK
GFRSSQILFRHALRNALLPVVSVLAIQLGYKLGGSVITETIFALNGLGRLAYESILGADIPTVQMLVFFF
ALVFIVLTVLGDILNAWLDPRMRVE
>gi|99078092|ref|YP_611350.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTTTANAVAAMADDIIDLTPKERMIRKAKSHFGFKFGAFIVISFSLIAIFAPLFAPHDPYLQDLAKRLVP
PVWQESGSWEHILGTDALGRDYLSRLIYGARISMGVGFGAATLGCLIGVTIGLSAGYLGGRVDQAASFLL
TCQLALPSLLLAMALVFFVGSSVTTLLIVLGVLHWQYYMVVTRTLTRQIRSLEYVAAARSIGSTDRQILF
YEILPNLFNQIIVVFSLEMAVVIIHEASLSFLGVGVQPPTASWGLMIAEGKTMMYFKPYLVVIPGAALFL
LVLAVNLLGDGIRDITAPESRN
>gi|99078093|ref|YP_611351.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MQPLLEVQDLSVTLKLAEGEMTAVRDVSFTVNRGETLGIVGESGSGKSVSSMAIMGLLPEGTRTQAACLR
FDDTDLLTASEKQMSRLRGNKIAMIFQEPMTSLNPVYTIGRQMTELMQHHKNVSKAEARARAIELLEKVG
ITAAASRLSQYPHQLSGGLRQRVMIAMMLMNDPDLIIADEPTTALDVTIQAQILNLLKDLQKELNIALVI
ISHDMGVVARVSDKIAVMYAGQVIETGTVTNVLQNPVHPYTQGLLESIPIPGQIEPGGQLGSIPGLVPSL
KTRFKGCRFANRCTRVQDACIDQSVALRDAPTGQAYRCILPFEDLMAPAAPESYEAAGSGHVYGSRIDKE
ATPLLSADAAECVFQVSQDMFSAPKPLKAVDNLSLELSKGEVVAVVGESGCGKSTLARMLLGLQSPTNGK
VTLDGRDISAMSNAERSRKVQSIFQDPYSSLNPRRTIGEIIRRPMALHGMGSASEQQKVVEEIMELVGLP
RNFYHNYPNQLSGGQRQRVAIARALVLKPEIVVCDEPTSALDVSVQAQILNLLLELRREMRLTYLLITHD
MAVVEHIATRVIVMYLGRVVEIADARSIFKSPKHPYTKALLKSVLTPDPGAGVPSIELGSSYPNPINPPS
GCTFHPRCEFAEDICKAKAPLLEHLTGQQSCACHMVAREVV
>gi|99078094|ref|YP_611352.1| succinyl-diaminopimelate desuccinylase [Ruegeria sp. TM1040]
MNKLSAPRAQHAVDPVELTADLVRCQTVTPEEGSALKLLSALLSEHGFQCQRIDRNGIPNLFAIWGEDRN
GRTFGFNGHTDVVPIGDPKDWTVDPFGAEIRDGILYGRGSTDMKSGVAAFAAAAIEFVNETPPDGRVIIA
ITGAEETGSPDGTRAIVQWMEANDIRADHFIVGEPTSLKSIGDAIKIGRRGTITVFLTVTGVQGHSGYPE
KANNPLPALVDLLQGFGQAAMDEGTEFFAPSTLAITTIDTGNPARNVIPATCKATLSIRFNDKWTSGKVL
DWVSRHTRAAEDKFGVTISADHYLSGECFFTPPGALSKLVQDAVEQETGQRPQMTTLGGSSDARHLFKHC
PVVEVGLTGETLHQVDEHVSVAEINALKTVYGRILRDYFGSEGKI
>gi|99078095|ref|YP_611353.1| poly-gamma-glutamate biosynthesis protein [Ruegeria sp. TM1040]
MTTLALTGDSILQRRLLSTSDPVIKPLFDLIRGCDAAFTNLEVLPNDYRGDPAFDSGGSHFGAPSWVLDD
LVEAGFGMFSTATNHTLDYSISGLEYGLDQLDKRGLCHAGAGRHLEEARRAAYLTTPNAAIGMVACGSTY
TKGQEAARQTAAMQGRPGLNPLWPDSTYEVTAEQMAVVKEMAEGLGLEKFRQIRISTGFAFEAPEGIFPF
NGMNFRVGEQTRHVRHPNPKDLAAIIRWVEEAKLASDIALVSIHAHEHADEKDQPADFIVEFAHAVIDAG
ADLVVGHGPHLLRGMEIYKGKPIFYSLGNFIGQNEMVRQLPGESYDRFHVDDRLTPTQLYKQRTLDDQKG
FPSDERYWQTVVPICHFEGDGLVDVEIHPVSLGLGEQRHRRGRPRLAHGAEAESILNRFSSLSYEFGSTL
EVGDTCANAVL
>gi|99078096|ref|YP_611354.1| phage integrase [Ruegeria sp. TM1040]
MQTPNLPAIRALRPAWNKGRIVGQKRPLKPKHVWAIRVRLELAENHRDLALFNMAIDSKLRGCDLVKMKV
VDVMASGLIKERASVLQSKTQKPVRFEISEGTRASIEKWMEDELMVGSEYLWPGRFHERLHISTRQYARI
VRDWVTSIGLEASAYGTHSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAEAIEI
>gi|99078097|ref|YP_611355.1| hypothetical protein TM1040_3119 [Ruegeria sp. TM1040]
MTVFLGYDPGGKGKNGVAAIRVISDEPEVVAKATVRDAAEALSWLEDYAKTAVALGIDTLLAWSPKGGRA
CDDALRRKYGGNSVVAQNSLYSSMTLNGAIVAKRLGLPVYESHPKLLLRVSSENGIREIYDDAVSATEAD
HEGDAIVAAWCAAMGHSRKWAVDLYMDVEDDIELVVPEARYPWFEKI
>gi|99078098|ref|YP_611356.1| hypothetical protein TM1040_3120 [Ruegeria sp. TM1040]
MWEADLDEEIANFMLLAAKLEFFLVNLDQTFAHVDGKTRVVRGINWDRIGQSLEVKHPFSGFDFAGSGFQ
IFKETTPQLLVAKEGGGLKWDSDEIEVSSWQILLGRSYAQLRNNVAHGNKAQLSAPFTHDRTREFLEAGR
HLIHFLAGAHSSDDTWSYAVQFH
>gi|99078099|ref|YP_611357.1| hypothetical protein TM1040_3121 [Ruegeria sp. TM1040]
MRELIEVILEFATKSSATLSALSALGASVAALVAIFLSIYSLSVQRQHNRLSVRPIANFVYGDFEDEISI
RLMNAGVGPMRIDAFTVKCSNTGNITNSLIEQMSDKQVVATWNAFSGNPCGKTIRAGGELALLKLTGDPE
DAEFSAQRDTTRRALMAIELKVTFSDVYGKTIGTEATVLSWFGRHFFVYDFATGTLTRP
>gi|99078100|ref|YP_611358.1| hypothetical protein TM1040_3122 [Ruegeria sp. TM1040]
MTNLEAIRKTILAWHELPNVNQAYTLHYDETNNIRTLFLTPDGLNVCRPDFFVLGGVAHRGRAPHLDFSS
LSHEFHLQRSASELKLNQLGNGDFSALLKSKKITAFLHWLVRNELFVHFQVLDPLYWSIVDVIDSILTEQ
RDVNLMMAHAMLKNALYAVLRTDLDTTAALLGRFNFPDVGRARRCEFIAELGAMLDERRSVLPAQHYLFL
REVLRVGARLRRLPYLEDEKPNILINGFGDFYLHRIALFRNATHILDIEPQIANFLRGLDLHDGGSPATH
FSFVNSKQHAWIQVSDAITGLLGKFFKFVSKHTEDELEEALTTFNSHQQKNLMALTHLLRRSIGECPGFT
MYVLSQDDQARIARVLSRFESV
>gi|99078101|ref|YP_611359.1| hypothetical protein TM1040_3123 [Ruegeria sp. TM1040]
MPITSSAPALPSLYIFLDEGGNFDFSLRGSKYFTLTCVSLFRPFTLHTDLDTFKYNLIEHRIKPRIAMDH
FHCAYDNPHVRSKVFDMLSAQVPANSVDAVIVEKSKTGPALRPPEEFYPRMLGYLLRYAVDKAPGAIGEV
VVITDSIPVKKKKRAIEKGIKTSLPKMLPTGTPYRLMHHPSAAHYGLQVADYFNWAIYRKWEHKDPSSHS
KVAPQIRTEFDIFRTGTRHYY
>gi|99078102|ref|YP_611360.1| hypothetical protein TM1040_3124 [Ruegeria sp. TM1040]
MTAEVAIINRSGIALAADSAVTIGRDRVWKNSNKLFHLAPSNDVAVMVFGSGDYCGLPWEVVIKEFRKSL
GKTTYSRVEEYVGRFLGFLDDLVVPPTPLADLTGWYIILNAISQTQKAMTASGSLKRRQQLIAAISEKIE
EADHYPLLFDGYSRDQYRKKHSQKIKEFMAEELGMHVTQTMHSKMITLCYERSRRAFETKFETGVVFAGY
GDSELLPVVIEMCVDGELEGKVRAWQVRENNMNEGGTSGAILPFAQADVANLFVEGTLPQYLSYTRQTLL
QTLDLKTAELVKDYVPEPDRVVEMERQKKANRAMVKQFSTDFKQYRHDESVANLLKVVNSLPKEEMAAMA
EALVEITSLRRKMDSSLETVGGPVDVAIISKSDGFVWTKRKHYFDVEFNRDFMERRNQRYQGNQDA
>gi|99078103|ref|YP_611361.1| hypothetical protein TM1040_3125 [Ruegeria sp. TM1040]
MLINRAHHPAGLEVLEAGLAQVVEGLAFVVGVCRENASGRGGTLVLGIAFFYGVQIVKPLNEHEESQLFD
HTESGLEASPDQNAFQI
>gi|99078104|ref|YP_611362.1| integrase catalytic subunit [Ruegeria sp. TM1040]
MRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKT
YRIYKELGMQLRSKTPKRRVKAKLRDDRKEAVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLD
ARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAYANDVTLDFSRPGKPTDNAFIEAFNG
RFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
>gi|99078105|ref|YP_611363.1| transposase IS3/IS911 [Ruegeria sp. TM1040]
MKASKFTDAQKAFIIKQAEDGTSVAEVCRKAGISTATFFNWKKKYAGLMPSEMKRLRELEQENARLKKIV
ADLALDKEMLQDVIKRKL
>gi|99078106|ref|YP_611364.1| LacI family transcription regulator [Ruegeria sp. TM1040]
MTNDSKRPLTLRDVSDATGVSEMTVSRVLRNRGDVSEKTRQKVLEAAKELGYVPNKIAGALASKRVNLVA
VIIPSLSNMVFPEVLTGINRVLEDTELQPVVGVTDYQPEKEEKVLYEMLSWRPSGVIIAGLEHTEPARAM
LAAAGIPVVEIMDTDGNPVDSMVGISHRRAGREMAKAILKAGYSHIGFMGTKMPLDHRARKRFEGFTEAL
AKEGVEIEDREFYSGGSALAKGREMTQAMLERSPELDFLYYSNDMIGAGGLLHLIDQGIDVPGQIGLAGF
NGVELLAGLPRQLATMDACRQEIGMKAAQIIAAQLEDSNAEIEKHVTLTPTITYGDTLKRR
>gi|99078107|ref|YP_611365.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Ruegeria sp. TM1040]
MSALEIGIWSFPVLMGLIFLRVPIGLSMFLVGLGGLVLVTGDTIVAFGRLKNETYSTFSSYSLSIIPMFF
LMGQFATLGGMSTALFKAAEGFIGHRKGGVAMAAIGACAGFGAICGSSLATAATMGRVALPELKNYGYAS
GFSTATLAAGGTLGILIPPSVVLVIYAILTEQNIAKLFLAAFIPGLLAAIGYVIAISVYVRLFPESAGTR
EPIPWRERFSLLFAVWPVLLVFGLVVGGIYAGWFTPTEGAAVGALGTGLIALANGGLTRQTLTDSFMITA
RSTAMIFFIVLGAGFYNGFLALTQVPQELANFVVAQGLSPWMVLALILVFYLLLGCLMDSLSMILLTIPI
FYPVISAMDFGLVSLPAMQADAAMEVLRAGVPDGMGQEMLASIKDAIANGTELTREQMKELGIRVTQGIA
NRLETEYVAIWFGILTLIVVEVGLITPPVGMNLFVINAMDPKSRMVDTYKAVLFFVGSDLIRVVILVLFP
VITLLPLMLLY
>gi|99078108|ref|YP_611366.1| hypothetical protein TM1040_3130 [Ruegeria sp. TM1040]
MQRCFEKPKVGKGMHSYMMRLARIMAMIGGAVLTFLIFLTCISIAGRLLNGVFHSDMLEGLAPQLSEWMA
ARVGPVNGDFEVVEAGVAFAIFSFIPLCQITAGHAAVDVFANSFSARVNRILRMITEIVFALVLVLIAWR
LGAGTLSKFENGETSFLLEFPIWWAYGLSLIAAVVAAVVGIYMAVIRSIEAMTGQILIWDGVEVQS
>gi|99078109|ref|YP_611367.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MTTRRALLGAATALAFSAMGAVPAFAQEVTLKLHQFLPAQANVPKLILDVWADKIEDASGDRIKIDRYPS
MQLGGKPPELIDQVQDGVADIVWTVVGYTPGRFPSTEVFELPFMMTNARAASHAYWDMMEDHWLDTEFKD
FKILAGWVHGPGIFHTSDPVEVPKDLEGMKIRGGGRSVNALLTELGATPVGMPVPSIPEALSKGVIDGTT
IPWEVTTALKVPELVENHTEFSGRALYTLTFVLAMNKEKYDSLPDDLKKVIDDNSGVEMSVFAGGTMADS
DMPARENALDLGNNVITLDADQTAVWRERSQPIYDKWLADMSERGIDGQALLDEATMLIDKYTPQYEN
>gi|99078110|ref|YP_611368.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
MLCGRKQQGTKRSSGADLYTFAISLLLSVLPVSSAAQSSDGVEPGVAFRSGLRGPDAIEPSQVHLPTSVG
DALALPTSPFAYVLYGLSAIAVLAIVLAEVLRRVRRTRDTAQAQPVAPKAPETRPKGDSLALLDGEARVI
DANRRFEYEAGMPLAQIRGRPIWSIHAKGFGKCFWDGAIQEALTEGAWQGEARTLSDDLHPETETLSLRA
FNVSGADPTYEFRSRRSFRPKSDRAGLLDSGLRDALTGLPSRRAMKTQVEFAIVRAKAATAELAIILIDL
DRFRDINSIFGDDIGDRVIERLADAVRSVMRPGITIGRIGGDEFILLIEQASSPEVVLQVAHDIGAALGD
EVVVDGLTCRLSASMGIAQYPKDGSDQRNLMQAAGVSLCHAKAKGRGQICFYSENMEQRSEESLQMEHDL
KRAISDGELLMFYQPQIDLRTGQCIGAEALLRWQHPKKGLLLPGGFVPLALDTGLTTAIDQFVTDEVCRQ
IRAWNTEGYAPAKISVNMSAMTLLSPDFARDLRSTARHHQVDLTQLEIEVLETTLFPRMRSSLNTVDDLR
TMGVKLAIDDFGTGYSSLAMLKDLPIDRIKLDRRFITSLPENVKDDRIVAAVVAMGRSLGVSVIAEGVET
REQRDRLISLGCAEAQGYLFSRPVPAAQFAETWLRYARPKPYVGSDA
>gi|99078111|ref|YP_611369.1| sulfatase [Ruegeria sp. TM1040]
MTLPNILIFMVDQLNGTLFPDGPAEWLHAPNMKKLAARSTRFRNCYTASPLCAPGRASFMSGQLPSATGV
YDNAAEFASSIPTYAHHLRRAGYYTCLSGKMHFVGPDQLHGFEERLTTDIYPPDFGWTPDYRKPGERIDW
WYHNMGSVTGAGVAEISNQMEFDDEVAFHATQKIYDLARGKDARPWCLTVSFTHPHDPYVTRKKYWDLYE
DCPHLMPEVADLGYENQDPHSKRIFDANDWRNFDITEEDIRRSRRAYFGNISYLDDKIGEVMEALEGTRQ
DKDTIILFVSDHGDMLGERGLWFKMSFYEGSSRVPMMISAPNMTPGLVCDPVSNIDVCPTLCDLAGVSMS
EVMPWTAGESLVPLGQGGTRSTPVAMEYAAEASYAPMVSLRSGRYKLNLCALDPDQLFDLDADPHERVNL
AKDPTHHEAYQALKAIAAERWDLDRFDADVRASQARRWVVYEALRQGGYFPWDYQPLQKASERYMRNHMD
LNVVEDQARYPRGE
>gi|99078112|ref|YP_611370.1| flagellin-like [Ruegeria sp. TM1040]
MSSILTNNGAMVALQTLKVVNTNLTDTQNAISTGKEIGVAKDNAAVWAISKTMESDIASFEAIEEGLSMG
EATVAVASAGAEQIVEKLVEIKELIVSAQAENVSHDKIQTDIESKIDQIESIIGAAQFNGANLLANTIDG
TATQMGVLASLDRVGAGGTVTGVDITIEAQGFESTLDLANSLTAITDTATAASALGEIEDFLQVAISGAA
ELGAAAARIDDQASFVSKLVDSMTMGVSTMTDTDMEEASARLSALQTQQELAVQSLGIANQAPQALLQLF
N
>gi|99078113|ref|YP_611371.1| cytochrome-c peroxidase [Ruegeria sp. TM1040]
MFERPTRIEFPTTEPYSPQRAALGKMLFFDARLSGAINMSCATCHNPSFGWETPASRAIGAMNQPLARHT
PTIENLTESEHFYWDGRIASLKEQIRGPITHPLKMNSSMRQVQRRLENISGYRRYFEIAFPDTGLTEDTI
LVALATYQRTLRSGWSPFDDWVEGDEDAISSSAQRGFDVFTGRGQCVSCHQGWAFTDHDFHNVSLGDDDI
GRGVLDPTMRYRFKTPGLRNIALRAPYMHNGSLNSLRAVVEHYRRGGAPNTTASDIEPLTEMSDRDVNDL
IAFLETLTAYAPHVSAPALPVD
>gi|99078114|ref|YP_611372.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
MSIKRRILGPIILLIVIGIVGAIWVARAAIKTQDLIQDADSAAVRTLQATERAQRIRAEIESRLSEFLEF
NTIAPPDRIRRNHQRYVDAFQNVWNDLRAAPGSEAQKRMVAQVEEQFKSWNTEASIALGLIYDTHIPSRN
RLDTLARRLELALVALEQEVRLSAEQVNQDARRRYAKQVVIVLVTMIGIFLVAGSAFIGFGGQLVRSLTQ
LAAAMERIRAGDFDTPLSDLQRRDEVGKIARGVADFSSTLRDLSEAKTHIEHLALHDQLTDLPNRRALQD
YLERSVEQARDSNARHAVLHVDLDRFKQINDLMGHAAGDQILLHAAEAMQRQIGPDDMTARVGGDEFVIV
LRGHGTDSKTKAIAKRVIEEISKPVEIEGEFVNVGASIGIAYLAAGETDPARILSNADIALYIAKSEGRG
RVSFYNDATRARFEGNMALLRDLRIGLDNGEITAFFQPQVDGITNEVLGFEALARWHHPKRGMLDPGVFI
TLAFEHGLGDRLTERIVSDAISALLEWRALGLPAPSVSVNFSAKQLRDGGLVEYLDDALFAANLQPKDIA
IEVLESVLFSDGVDPALNTIAKLQDRGYKIELDDFGTGHASISNLRRFKVDGIKLDKDFVAGVDQDAEQE
VILRTMIDLCRNLNIECLAEGVETEAEIAKLISLGCSRFQGYGIARPMARDAVTSWLETHYGRKPDAKVS
>gi|99078115|ref|YP_611373.1| NADH:flavin oxidoreductase/NADH oxidase [Ruegeria sp. TM1040]
MSHDPLLQPFQLKHLTLRNRIMTTSHEPAYPEDGMPKARYRAYHAERAKAGVALAMTAGSAAVSKDSPPV
FNNILAYKDEVVPWIRDLTEGCHEHGCAVMIQLTHLGRRTTWNKGDWLPSVSSSRHREPAHRAFPKLVED
WDIERIITDFADAAERMKAGGMDGIELQAYGHLIDQFWSPLTNDLNGPYGADTLENRLRFPMDVLQAIRK
RVGPDFIVGMRFTADEVQKGGITEEEGLEITRILSATGQVDFLNVIRGRIHTDPAMTDVIPVQGMRSAPH
LDFAGRVKHETDLPVFHAARIPDVATARHAVQAGLLDMVGMTRAHMADPHVVQKLKEGREEDIRPCVGAT
YCLDRIYQAGDALCIHNAATGRELTMPHEIAPAEKQRKVAIVGAGPAGLEAARVAAERGHRVVVFEAQPD
PGGQIRLTAQSPRRREMISIVDWRMAQCAARDVQFHFNTWAEEEDVLAQNPDLVIIATGGLPNLELFETG
QEAAHVVSAWDLIAGDVKPAGRVLIYDESGDHPGLQAAEIAAEAGAEVEVMTPDRTFAPEIMAMNLVPYM
RALQEKDVTFTVTRRLLGVARQGNELVATIGTDYSNFTTQKSYDQVVLNYGALPNDDLYQALRPASINHG
EVDHDALICGQPQAITRNPRGAFQLFRIGDAVSARNTHAAIYDALRLMKDL
>gi|99078116|ref|YP_611374.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MSKPTSPRPRGSRDLWLDAALDLLVSSGIDAVKIMPLARAVDQTRTGFYWYFKDIGALHEAMIDTWEARN
TGQIQARCEAPAQSIGAALFNLMDCWLNPALFDARLDLAIRNWARNDTRLAARLESADNARIKSVRDMFL
RYGYSKEQADVRSLTTIYTQVGYISMEVEEDPLQRLNRVPHYVEMFSGQPPTEEEIAEFMGRHQTPQ
>gi|99078117|ref|YP_611375.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MALVSVKNLSRVFDVSKPWLNRVIEREPKAFLTAVSDVDFEVEPQTTYALVGESGSGKSTIGRMLVGLLN
PSDGNVEIEGVDLANEKDAAKVDAIRSDIQMIFQDPYASLNPRWRVRDIIVEPVAARGGKTEGLAEKLLE
QVGLSVKDAGKFPHEFSGGQRQRICIARALASEPRLIVCDEPTSALDVSVQSQVLNLMSDLKDNFGLTYV
LITHDLTVVQHMADRIGVLYLGRLVEEGAPDELFERPKHPYTQMLLEAAPRMDGFGREVTPPEGEIPDPI
NPPSGCAFHPRCPLATDICKQQRPEMRRLGTTRVACHMAEG
>gi|99078118|ref|YP_611376.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MADPVLSIRNLCVEIPTRHGILKPVDGVSYDIAKGEILGIVGESGAGKSMAGNAVIGLLNPPAHVSSGEI
WLNGKRIDTLKGDALRRLRGKEIGMVFQDPLTSINPLLRIGDQLVETMLTHLPISKSEAEKRAVAALEEV
GIPGAAKRVNSYPHEFSGGMRQRVVIALALCAEPSLVIADEPTTALDVSVQAQIIALLKRLCRERGTAVM
LITHDMGVIAEAADRVAVMYAGRLAELGPVRDVITAPEHPYTHGLMASTPLASRGQKRLHQIPGAMPRLD
AVPDGCAFNPRCPHAADKCRAAPAPKVDGGSAACWFPLQHEEAS
>gi|99078119|ref|YP_611377.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSETSTPAQKSRLRTALESDLFYTFKRSPVAVVSTIVVLVLVLSAVFAPLIAPTNPFDPASLNLMNGFTA
PMSPNDFTGEVFLMGTDDQGRDVFSTILYGMRISLFVGVAAVLFAMVLGITLGLLSGYLGGWVETVIMRI
ADVQLTFPSILVAMLIFGVAKGITPVEYRDQMAIWVLILAIGLSDWVQFARVVRGATLVEKNKEYVEAAR
LIGRRSGAIMLRHILPNVLSPVLVIATISLALAIIAEATLSFLGVGAPPTQPSLGTLIRIGQGFLFSGEW
WILLFPAITLLGLALSVNLLGDWLRDALNPRLR
>gi|99078120|ref|YP_611378.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLAYIIRRVAQSALVLLIVGLVAFAMFRFVGDPIDNMLGQERTAEDIERLRAQLGLDQPFVVQYYRFLEN
AVQGNFGVSYRQGRPVIDILMERAPATLELAAVSGILAIIFGIALGVFTAIKRNGIAANLIMSGSLIGVS
LPTFLIGILLIYLFSVELGWLPSFGRGDVVDLGGWSTGFLTVSGLKALILPSITLGLYQMTLIMRLVRSE
MLEVLRQDYIRFARARGLRDRAVHFRHALKNTMVPVITVIGLQVGAIIAFAIITETVFQWPGVGLLFINA
IQFVDIPVMAAYLMLISVMFVGINLIVDILYFFIDPRLRVDRKGGH
>gi|99078121|ref|YP_611379.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MLRLLCTAACATALVSQLPASAVAKEFSWAVTTDPQTMDPHAVNSSPVLGFLNNVYEGLVRRGKDMSIEP
ALATGWEPIGEGEGWRFFLREGVTFQDGSAFDAEDVIFSYERASSPESDTASWFAPVSDVVKVDDYTVDF
LTNSPNPIFPDSIANWMIMDSGWAEANAASRPDKESGNYATLNANGTGAFRVTAREPGLRTVLEPYEGWW
GEAEHNITRAEMTPIQNPATALAALLSGDVDMINPVPIQDVERLQGNPDVNVVQGIEARVIMLGFGHQAE
ALKYSAETEDNPFGDPRVRKAVAHAVNVPAILRTIMRGNAEPVNQLVSSAMRGYSEALPGQMAYDPEAAK
ALLAEAGYPDGFSFGLKCPNNRYLNDEAVCQAVTAMLAQVGLKATLDAMPVQNYWPELRAGNFDMYLLGW
SPGTFDAEHPIRFLAATPNTEKKLGSWNFGGYSNARVDALLPKIQSEIDDSTRQGMLDEVAQVLQDETAY
VPLYVQPLVWGTRSNVTLTQRPDNFFILRWVSVK
>gi|99078122|ref|YP_611380.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKTTTVLTLTSLLLASAAPLSAETLRWARSGDALTLDPHAQNEGPTHTVRHQMYEPLIIRDVTGAFEPAL
ATEWAPKEGDPNVWVFKLREGVKFHGGEDFTAEDVVFSFERAKQANSDMKELIGSITEVRAVDDLTVEIV
TDGPNPILPSNLTNLFIMDKGWTEANNTVNVQDFEGGEITYATTNANGTGPYVLQSREPDVKTVMTLNEN
YWGKDQFPLEVTEIVYTPIQNPATRVAALLSGEIDFLQDMPVQDLDRVSGADGLMVRKAPQNRVIFFGMN
MGADDIEADNVDGKNPLADVRVRKAMSMAINRDAIQKVVMRGQSQPAGMIAPPFVNGWTEEMDSESKTDI
EGAKALMAEAGYADGFSIRLDCPNDRYVNDEPICQAAVGMLGQIGITVNLDAKPKAQHFPLITDGKTDFY
MLGWGVPTYDSEYIFNFLVHGRESDIGTWNGTGFDNDELDAKIKSLASNTDLEARNQDIADIWRVVQDEQ
LYIPIHHQVLNWGMSEKVDIAVDPEDQPKVKYFKMN
>gi|99078123|ref|YP_611381.1| hypothetical protein TM1040_3145 [Ruegeria sp. TM1040]
MQKGFAIVALASIAGTALAEGSVTLPEEGSISRSEGQAAFERIYEVVTHPRCANCHVGDDNIPMWSGPSY
GAPQPHGMNINAGESRIGAEFLPCQTCHVVSDDFNTAPHAAPRFGIAWQLAPVEFEWFGKSRAEICAQLK
DPERNGGRDWRGMVEHLEHDASLNGPVAWGWSPGAGREPAPYSLDGHINDMALWGAAGQPCPSGG
>gi|99078124|ref|YP_611382.1| aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding [Ruegeria sp. TM1040]
MSRAGTIARRTFLIGSAAIAGGVAFGVYMAKKPIPNPLLDDLKEGEAAITPFVKIDASGITLITPRADKG
QGAYSIQAYLIAEELDIDPATATLSPGIPGQAYYNGTVLSEGAPVPAYQEGFVAETLRDFMAVPAKLFSI
QITGGSSTVPDGFERMRLAGATARETLKEAAARRTGLSRAALKTREGAVILPDGTEIAYTDLAAEAAEID
PITDVALRPASEWRYLGKRDLPRLDILRKSTGTEVYGIDLDFPDMLHATVRANPAVGAGVARYDASAAEA
LRGVEKIHPVTSGVGVIANNTWRAFQAAEALEIEWRKPDYPGNSEGIFTALEEALGDPDHYDHRQRNEGD
VDAALGTDGTTGDIVEARYRVPYLAHAPLEPMNAVVRVREGQVEIWTGTQIPVFVRDRAAKIAGVSTEAV
KVYVLPMGGSFGHRLEMTHVEQAVELALAVPGRHLKLTWSREEDMSHDYPRPASVAAARGKVAAGKVVAF
DLSVSQSAMAPEWFGRLSGMRLPGPDATITTGAWDQPFDIPDYRVTGYRAPSMVPVSSWRSVGASSNGFY
HDCFLDELIHAAGADPLAERIRLCLHDPSRRVLEAVGEMSGWDGPSLGAGRGRGVGFCMSFGVPCAQVVE
VTQTEAGIRIDRVHVAVDVGEVLDPTNLEAQVFGGVIFGLGHAMNCALTYEDHAPLETNYHAYEGMRLYQ
APKIEVRALSTGSRIRGIGEPGVPPAAPALANAIFAATGQRIRELPLNKHIDFV
>gi|99078125|ref|YP_611383.1| (2Fe-2S)-binding [Ruegeria sp. TM1040]
MKLTVNGTEYEVDVEPEMPLLWVLRDELHIKGPKYGCGIAQCGACTVHVDGMAVRSCQLPVGALEGEVTT
IEGLGTPESLHAVQAAWVAHQVAQCGYCQSGQIMQAAALLDLNPAPTDEEIDAVMSANLCRCGTYPRIRA
AIHDAAQKLSEA
>gi|99078126|ref|YP_611384.1| N-acetylglucosamine 6-phosphate deacetylase [Ruegeria sp. TM1040]
MMHPLTTYLGGPIFDGKHVLQGFGAQFREGALVALAPVAELQEQGEVIDLGGDLLSPGYVDLQVNGGGGV
MLGDAPNVETIRKICAAHRSLGATTILPTLITDTAEKTRATLEAGIAAHEAGVRGFGGLHLEGPHLSVAR
KGAHDANLIRAMDDSDLAAICTAAARLPKLKVTVAAESVTPEQVMRMVEAGVLVSLGHTDAPFDTCVDYV
RAGARCATHLFNAMSQLGNRAPGLVGAVLDTAELSAGVIADGIHVHPASLRAAWQAKRRGPGHLFLVSDA
MAVAGTEDREFLLEGRRITRSDGRLCLSDGTLAGADLDLTTALRVLVSQCDVPLAEGLEAATSVPAALIG
KSVDLTQPGQKQVDMIRIKPELSAAAPVLP
>gi|99078127|ref|YP_611385.1| glutamine-fructose-6-phosphate transaminase (isomerizing) [Ruegeria sp. TM1040]
MNATQTQMRREINEIPDAVERLLTEGAGAVAATAADIRDLQPSYLLSVARGSSDHASTYLKYASELLLGL
PMASVGPSVKSIYGVDLHCKGALSISVSQSGKSPDIVQLTSAFRDKGAYTVAITNDAGSPLAETAAAVLP
IHAGPELSVAATKTFVTSLVAGLWVLAEVKQDAALLEAILRLPGHLAKAKDCDWSAAIEAIDGQSLYTLG
RGPSWAISNEAALKFKETCQIHAESYSAAEVLHGPVSIVGENFPVIAFAAADAAEESVGEMVAALGDKGA
RVFATTHKAKGAEVLPHVRTDHWITDPIASIVSFYGMVEAVAARRGVNPDAPRHLNKVTETV
>gi|99078128|ref|YP_611386.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MTITEFLKPESWFDQGAGPRYVQLRRRLEDAIQSGVLPPNSSLPPEREIAEITDMSRVTVRKAMQELVQQ
GAIEQRQGSGSFVRESTARVEQSLRHLTSFTEDMQKRGMETTSKWLERGVFMPTEEEISVLGLGAEESVA
RIYRLREAGGQPMALERAALPLSVLPNPLEVTSSLYATLGQIGHRPVRAVQKISALNLDSNDAKLLNVAE
GTAGLRIQRVSFLEDGRVAELTRSLYRGDAYDFVAELQLSG
>gi|99078129|ref|YP_611387.1| ATPase, BadF/BadG/BcrA/BcrD type [Ruegeria sp. TM1040]
MTDALKTSVLALDGGGTRCRLALCDGHSVIAVETGSANISTDMVGAVAQVRDGLEQLAVKSGAPVEALAM
CPIYIGIAGVTGPEIAGRFAEALPFERVRVTDDRPTALAGALGGADGLIAHCGTGSFFAAQIDGRSRFAG
GWGSVLGDPASAQWVGRRALACTLEEVDQLREVSELGAHLLARFGGSAEIVAFAVTARPADFGRVAPDVT
AFAAKGDPLAVEILTDAAHEIAITLHKMGWKAGLPLCLTGGIAPQFRAYLPPAMQEACIAPRGTPLDGAI
ALAHDFAREVRDDDH
>gi|99078130|ref|YP_611388.1| N-acetylmuramic acid-6-phosphate etherase [Ruegeria sp. TM1040]
MHNQAEGLDARPLHEVAEILAEAQQEASGAARAATDPICSGATAMAQAIRAGGTLHYAAAGSSGLMAAAD
ALELGGTFSIPAEQLRIHMAGGMPTGVEMPGGTEDETADLERALSSIGPNDVLIGVSASGTTPYTVAGAE
RAKAQGACVIGIANNPNSALLGIADHAILLPTPPEVVSGSTRMGAGTAQKIALNMLSTLMAIDLGHVHDG
MMINLRADNIKLRIRARQIVTRITGADEDTATAAIEAANGNVKSAILIAAGASDLADANARLETTGGKLR
PALLSLNTQEKQQ
>gi|99078131|ref|YP_611389.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKSKFMMAALTGTALVATSALAEDVTLTVESWRNDDLTLWQDKIIPAFEAANPGIKVKFTPSAPTEYNAV
LNSKLDAGSAGDLITCRPFDASLALYEAGHLAALDDMDAMSNFSDVAKSAWQTDDGSASFCVPMASVIHG
FIYNKEAFEELGLEVPTTEDEFFAALETIKEDGSYIPMAMGTNDQWEAATMGYNNIGPNYWKGEEGRRAL
IAGEQKLTDEQWVAPYATLAKWADYLGDGYEAQTYPDSQNLFTLGRAAIYPAGSWEISGFNAQADFEMGA
FKAPVKSAGDTCYISDHTDIGIGMNASTEHPEAAKAFLAWVASPEFADIFGNALPGFFPLSNAPVELEDP
LAKEFVSWRGECESTIRSTYQILSRGTPNLENETWGASVAAIKGTETPEALGEKLQSGLATWYEPQQ
>gi|99078132|ref|YP_611390.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MQKPRIRWHIAIFLAPAVLIYTSVMIFPLFNTLRLALFQEIDQERVYVGLENFRTLFFDPIWSEQFWNAL
GNNFWFFLIHMLVQNPIGIALAALLSHPRLRFAALYRSAIFIPTILSFVIVGFAWKLILSPIWGIAPSML
DAVGLKSLFAPWLGKEEYALTTLALISVWQFVGIPMMLIYAALLSIPEEMLEAGEIDGVTGMSAFWKIKL
PLILPSIGIISILTFVGNFNAFDLIYASQGALAGPDFSTDILGTFMYRTFFGFQLQLGDPHMGSAIAGAM
FAIILVGVCLYLFGIQTRMRRYQL
>gi|99078133|ref|YP_611391.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSSARSNPINTAAMHGALIIYTLIALFPVFVILINSFKTRKKIFREPLALPDADSFSLVGYQTVMKQGDF
FLYFQNSFIVTVGSLTLILLFGAMAAFALSEYRFRGNMLMGLYLALGIMIPIRIGTVAILEMMVSTGLVN
TLWALILVYTAQGLPLAVFILSEFMRQVSDDLKNAGRIDGLSEFTIFFKLVLPLVRPALATVAVFNMIPI
WNDLWFPLILAPAEETKTLTLGSQVFIGQFVTDWNAVLSALSMAILPVLILYVIFSRQLIRGITSGAVK
>gi|99078134|ref|YP_611392.1| oxidoreductase-like [Ruegeria sp. TM1040]
MTRVLIAGLGNMGLSHALAHHTQDGAEIVGLVNRSGQVDHPDLQGYPVFTDFHAALEDTKPDLVVVATYS
DSHADYAVAAMEAGAHVFVEKPLATTVKDARRVVATAKAKNRKLVVGYILRHHPSWVRLIEESRALGGPY
VFRMNLNQQSKGAEWETHKALMQTTAPIVDCGVHYVDVWCQITDAKPVQVNAMGLRLSDEIAPDMYNYGQ
FQVTFDDGSVGWYEAGWGPMMSETAFFVKDVISPKGSVSITEADKSGSSDVDGHTRVGGLLVHRPEGDQL
IDLPDEPGHQALCDAEQAYMLRAIREDLDLSRHAQDAVQSLAICLAADESVRSGAPVKLNEVTP
>gi|99078135|ref|YP_611393.1| ABC transporter related [Ruegeria sp. TM1040]
MTALTLTNVNKSFGNVHVLKDINIEVDEGEFVVFVGPSGCGKSTLLRTIAGLEDVTSGEVCIAGEVVNQT
PPSKRGIAMVFQSYALYPHLNVRNNMSLALKQAKESKETIEERVAEASRMLSLGDYLDRFPSELSGGQRQ
RVAIGRAIVRHPKLFLFDEPLSNLDAALRMNTRLEIANLHEQLGATMIYVTHDQTEAMTLADKIVVLRDG
RVEQIGSPMELYNNPANQFVAGFLGSPAMNFLPAALLEDGNPNTLGVRPEDLRLDDAGLLEVTSKHVEHL
GGDTNVIADCHGHQITLRLFGQHAIRTGQGLRLSIAEGKSYVFDPSGARLS
>gi|99078136|ref|YP_611394.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MSKRHQTQETAMPKLGMEPKRRAALVSAVIDEIGETRSIDVTVAKIARRAGMSSGLAHHYFGSKEQMLIA
AMRFILAEFSADVRAELAKAKDPRGRLEAIIRANFAAHVFDPRKMSAWLSFYALAQSNPQAAHLMKLYQR
RLHSNLMYDLRALTPDASAVATKLAALIDGVYLRAALNVTGDRKEAAQQVSEALESFLNAKD
>gi|99078137|ref|YP_611395.1| hypothetical protein TM1040_3159 [Ruegeria sp. TM1040]
MAQYTVTAFRWSGTGYNAQYNTSYTAVITDDDAFLNGNGDSNETVSIDGGPSYVTNGAPYDINVSFTDTS
GTPHVETFYFFNVNNSWYFIPGPGSAFTEGATLGSYQSHTTAPTLYSTITCFVRGTLIETQNGLMPVEML
RPGTMVRTSDGSFKPLRLPMSRKIRPAELRANPKLAPVRIVAGALGNGLPKRDLLVSRQHRMLVSSKICE
RMFGQTDVLLAAHQLTVLPGIFEDNTQEDVEYFHLVFDRHEVIFAEGAPTESFFPGPEAIKAMPAEARAE
ILAIFPQIQTWGFVPEPAFQIPTGKLQRKLVARHLKNNRPLL
>gi|99078138|ref|YP_611396.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Ruegeria sp. TM1040]
MTQYLEFEKPLAEIEGKAEELRALARTNEEMDVVDEAAALDKKAAQLLKDLYADLTAWRKCQVARHPERP
HCKDYIEKLFTEYTPLAGDRNFADDLAVMGGLARFNDQPVVVIGHEKGSDTKSRITHNFGMARPEGYRKA
VRLMEMAGRFGLPVVTLVDTTGAYPGKGAEERGQSEAIARSTEMSLKIGVPVISVIIGEGGSGGAVAFAT
ANRVAMLEHSVYSVISPEGCASILWKDAEKMREAAEALRLTAQDLKALEVVDRVIPEPLGGAHRDPEASY
RAVGAAISEMLAEMKDMDAKALIKDRRQKFLDIGSKGLAA
>gi|99078139|ref|YP_611397.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MAQSYEDRILRVLRYIHDNPAGDLSLDRLADVAAMSRFHWHRVFRALTGETCGQSVRRIRLHRAAVALAH
SDASIEEIAATVGYPSRHSFSRAFTAAYGDAPGAFRAKGLHLPPLALRDPKELSMHNVTLRDEPARHLVT
VPHRGPYAEIGRAFEHFSALANSRNLWPQLGPVLGVYLDAPGEMPEDQLRSYAGAEYRGDGTPEGLEPFA
LPGGKAAVLTFKGPYAGLAAAYDSLFGGWLPQSGETPADQPCYEIYLNDPRATAPEELLTEIVLPLR
>gi|99078140|ref|YP_611398.1| lysine exporter protein LysE/YggA [Ruegeria sp. TM1040]
MMTYDLLAALALFAFVSSITPGPNNLMLMASGANFGFRRTIPHMLGVALGFVFMVLLVGAGLVQVFDAYP
VSYTVLKVGSVVYLLYLAWKIANAGAAKTGADGDAGTPMTFLQAAAFQWVNPKAWAMALTAISAYTPDHT
LWAILVVGVVFGAINLPSVGSWTVLGQQMARFLTSPKRLTLFNWTMAVLLVASLYPVIWPN
>gi|99078141|ref|YP_611399.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MAKTDKINQQILQELGRDGRISNLELADRVGLSPSACLRRVQELERAGVITGYRAVLDREAMGVGFVTYI
GVGLGEHTKEAQEAFERAMRSAPEVVECHNITGTIEYLLRVECADLKSYKQFHTEILGTSPFVTAITTYV
VMGSPKDQRA
>gi|99078142|ref|YP_611400.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MRSETRFRDGHLRGTASMKITTAGLILFTPQYQACVTFYRDCLRLRLLHRINRPGETLSTFDLGGAYLMI
EPEDDPAAALARLPLKLRFNVPDVQASSEKLRQRGVEVRLRHHSWGSTAEFSDPAGTRCALRSDEGFGV
>gi|99078143|ref|YP_611401.1| Citryl-CoA lyase [Ruegeria sp. TM1040]
MSFRPQPTPPARPNRCQLFGPGSNTKLFAKMAASAADVINLDLEDSVAPSDKDQARANVIDAINTVDWGR
KTLSVRINSLDTPYWYRDVVDLLEQAGDRLDQIMIPKVGCAEDVYAVDALVTAIERAKGRQKPISFEVII
ESAAGIAHVEAIAASSPRLEAMSLGAADFAASMGMQTTGIGGTQENYYMLHEGAKHWSDPWHWAQAAIVA
ACRTHGVLPVDGPFGDFSDDEGFMAQAKRSATLGMVGKWAIHPKQIALANEVFTPSDAAVAEAREILAAM
EEAKATGAGATVYKGRLVDIASIKQAEVIVAQSDLIAQNS
>gi|99078144|ref|YP_611402.1| hypothetical protein TM1040_3166 [Ruegeria sp. TM1040]
MIETPYLLFLGDAPDMLAAKVAIGIRDWRPDHAVGQISLPGCGADLGLTEMTLEDAKAAGAKTLVIGVAN
RGGKISQEWKKVLVQALEEGFDLASGLHNLLRDEPDLAAVAEATGRTLHDVRVPSVQYPIADGVKRRGKR
CLAVGTDCSVGKMYTALAMDKEMQARGMKSTFRATGQTGILITGDGVPLDAVIADFMAGSIEYLTPDNDD
DHWDLIEGQGSLFHVSYSGVTMALVHGGQPDALILCHEPTRTHMRGLPDYDVPTLEELRDVALPLAQRAN
KNCKIVGISVNTQHLGEEEAVAYLKEVEGRMGLPAVDPYRHGAGRLVDALAAV
>gi|99078145|ref|YP_611403.1| mandelate racemase/muconate lactonizing-like protein [Ruegeria sp. TM1040]
MKITVTPDVFKLAQVFTISRGSRTEAKVLTVRIEDGDHVGWGECVPYARYDETLESVTAQIEALPATFTR
AELQSLLPAGAARNAVDCALWDLEAKKAGKPVWELAGLDQPGPEITAYTLSLASPEEMQKQAAENAHRPL
LKIKLGTPEDMPRLEAVRAGAPDARIIIDANEGWSAEVYAELAPHLLRLGVELVEQPLPAGEDEALIGME
RPVPVCADESAHDCASLPKLKGKYDVVNIKLDKTGGLTEALKLRDAALAEGYQVMVGCMVGSSLAMAPAT
LVAQGALVTDLDGPLLLAEDRPEPLTFDAEGVHPPRPALWG
>gi|99078146|ref|YP_611404.1| aminotransferase, class IV [Ruegeria sp. TM1040]
MTRTVYVNGDYLPETEAKVSIFDRGFLMADAVYEVTSVLGGKLIDFEGHAVRLKRSLDELDMAEPCTKEE
LLEIHRKLVELNDIDEGLVYLQVTRGSDGDRDFVFPSEDTKPTIVLFTQNKPGLADSPAAKKGAKIISIE
DIRWGRRDIKTVQLLYPSMGKMMAKKAGADDAWMIEDGHVTEGTSNNAYFVKDGVIVTRPLSNDILHGIT
RKAVLRMAEEAQLKVEERLFTIDEAKAADEAFTTSASAFVMPVVEIDGVALGDGTPGPIAKRLREIYLEE
SIKAAV
>gi|99078147|ref|YP_611405.1| extradiol ring-cleavage dioxygenase III subunit B [Ruegeria sp. TM1040]
MTRMPTFFISHGGGPWPWMPEWRAQFAPLEASLKAMPDQLPERPKAVLMISGHWETEGFAVMSSPQPPMV
YDYSGFPPETYEITYAAPGAPILAARTQDLLAQAGLPTRLDPEIGFDHGTFAPMAVIYPEADVPLYQVSL
QKAYDPAAHFAMGRALAPLRDEGVVIIGSGLSYHNLRAFGPGARVPSEAFDAWLNDALALDPSARTEALM
NWEQAPYARDCHAQEDHLAPIFAALGAAEQDETTRIYHQTEIFGGVTASGFRFG
>gi|99078148|ref|YP_611406.1| hypothetical protein TM1040_3170 [Ruegeria sp. TM1040]
MTQPDLDAQTQIELEAAAFRRLRQHLMQDRTDVQNIDMMNLTGFCRNCLSRWYQEAANEKGIEMDKGQAR
EIFYGMTMDDWKANYQTEAGADKQEAFQKAFAENVGTEKG
>gi|99078149|ref|YP_611407.1| K+-dependent Na+/Ca+ exchanger related-protein [Ruegeria sp. TM1040]
MLEIGLLLVVGLALLMVGGDLLVRGAVQAAARLGVSPLVIGLTLVGFGTSTPELVTSVQAGLSGAPGIAY
GNVVGSNIANILLIAGISALLCPIIVARAALRRDAVVMLLAALVFSGLAAVWPMGRLSGAALIIAMIGYI
TFVVRQERQNADTGALHDKGEALAGAAPGLDPAQTKSGRGLAVSLLLALGGLVLVVVGGAALVNGAVALA
RSFEISETVIGLTIVAVGTSMPELVTSVIAALKRQGDVAFGNVVGSNIYNILGIGGTTALIAPSDLPGDI
LRFDAPVMILVSAGFVLFAATGFRVGRREGAILLAGYGLYIWMIWPQ
>gi|99078150|ref|YP_611408.1| ASPIC/UnbV [Ruegeria sp. TM1040]
MRRPETCVWPVAALFASVAQADPQIPRFTPIEMGEHIYSGGWEHYVGGGLAVFDCNGDALPELYAAGGET
PAQLFLNTSGADGALSFQPATPEALALTGVTGAYPIDIDGDGHLDLAVMRAGTDLLLQGQGGCAFHPFQG
LGFQSGDHWTTGFSATWEGENTLPTLAFGTYVDRANPEGPFGTCDDTLLYRPSGDKYGPPEALSPGYCAL
SVLFSDWNRTGRADLRLSNDRHYYVRGGQEQMWAMEATPRLYTEAEGWKPYALWGMGIASRDMNGDGFAD
VYLTSMGDQKFQLRNPEAEGPVWEDVTYGFGTTAHRPYTGGDGRPSTGWHAAFGDVNNDGLDDIFVTKGN
VEQMPDAAQKDPNNLMLQQQDGLFTEAGAEAGIASLQRGRGGALVDLNRDGLLDMAVVNRRAPLEVWQNR
GPADATGGNWLLLRLGAEGPNRDAIGAFVEVTAGDRTYLREVTIGGGHAGGDLGDLHFGLGGVETVDLRV
TWPDGQVSDWSTVKANQRLLLRPGRLPTPED
>gi|99078151|ref|YP_611409.1| ROK domain-containing protein [Ruegeria sp. TM1040]
MYPFSQGEIAAACPRWHKRAPFGGRRGRSFELARSGRLTPSSEQRESGRQQILDVIRAQESIARIDIAQA
TGMSPATVTAITAELLAAGLIEEIAPELAPGARRGRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQ
ELASHEMPLVQGTMPVPELCAQIRRALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEERNV
AFTAAISAELPCPVFLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELG
HTKVHLEGALCQCGQRGCLEAYVGDYALLREANISSGSERHTTIASLFQSAENGDVVAKSILDRARRMFA
MGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEEMRQWVVQVDAPLPEVMVHDWGDLMWAKGAAAYALE
EVTARTVRELANAAA
>gi|99078152|ref|YP_611410.1| D-xylose ABC transporter, substrate-binding protein [Ruegeria sp. TM1040]
MKFLNGLSVIALSAFAASSAFAADLTVGVSWSNFQEERWKTDEAAIVAALEEAGAEYISADAQSSSAKQL
SDIESLIAQGVDALIILAQDAQAIGPAVQAAADEGIPVVAYDRLIEDNRAFYLTFDNVEVGRMQARAVLE
AMPKGNYVMIKGSPTDPNADFLRGGQQEVIQAAVDAGDIKIVGEAYTDGWLPANAQRNMEQILTANDNKV
DAVVASNDGTAGGVVAALTAQGMDGIPVSGQDGDHAALNRVAKGTQTVSVWKDARDLGNAAGEIAVALAG
GTAMEEISGATSWTSPAGTTMTARFLAPMPVTKENLSAVVDAGWITQEALCQGVENGPAPCN
>gi|99078153|ref|YP_611411.1| inner-membrane translocator [Ruegeria sp. TM1040]
MTDTTSQPITPQNKRNLFQQLELDVRLLGMIGAFIILCIGFNLVTDGRFLTPRNIFNLTIQTVSVAIMAS
GMVFVIVTRHIDLSVGALLATCSAVMAMTQTEFVPHVLGLGLNHPITWIVAVVVGLVTGTLIGAFHGWMV
GYLTIPAFIVTLGGFLVWRNVAWYLTDGQTIGPLDSTFMMFGGTNGTLGTSLSWILGLVATALALLTLWN
SRRAKLAHEFPVKPLWAEGALALIISGSILGFVAILNAYEIPSRRLARMFEARGEVMPEGFTQGYGLPIS
VLILIAVAVVMTLIARRTRLGRYIFATGGNPDAAELSGINTRMLTVKIFAIMGFLCALSAVVASARLANH
SNDIGTLDELRVIAAAVIGGTALSGGFGTIYGAILGALIMQSLQSGMAMVGVDAPFQNIVVGTVLVAAVF
IDIIYRKRVGAK
>gi|99078154|ref|YP_611412.1| ABC transporter related [Ruegeria sp. TM1040]
MTTPKELRAQGVTPMVEMNNISISFGGIKAVDDVSVDLHPGEVVGLLGHNGAGKSTLIKVLSGAYKMDSG
EIRINGNKVEITNPRDARSHNIETIYQTLALADNLDAASNLFLGRELVTPLGLVNDAAMEAECRKIMGRL
NPNFRKFNEPVSALSGGQRQSVAIARAVYFNAKILIMDEPTAALGPHETQMVAELIQQLKAQGIGIFLID
HDVHAVMELCDRASVMKNGQLVGTVDIDDVTDDDLLSMIILGKKPGEAASEGR
>gi|99078155|ref|YP_611413.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MSDLLKTVAGKLVLATGIAITVILAGYISISGWRASHQADQQVMELATQQAGEIAQTIAVQVTQATSAGA
AVSGALSGYMAGGNANTADAIELLRGVPTQYETIFSSWMAGMPDGSTDAFLTGAEGRNESGVFTPYWTKA
DQGGLDFSTFDIDPTSQWFAAPIETSASIITEPYLSSEGRLLTSVSVPVVVEGQTVGVAGVDIVLTDLTT
MLGTLETFEGGRVMLVDSNGKWLANPDVADLTQPYDETGAELVEAALADGAPRVITGLPDGATRLVYPFT
APGMNTTWATILDVPAAVFTIPVRDAVLSSVSGGVLILLMSLGTIYFTARALVGRPLSEMLSSVNKLASG
QYDEAVQGTERKDDVGTMAASVEALRERLLEKEHLEQEQDKQQAEQARVVDTLAQSLRSLAKGDLSRTID
EEFSGSYEALREDFNLTVNTLNDMMATLSESIMEIRARSDEISLGSDELARRTESQAATLEETVAALDEM
TTSVRSAADTAANVERNISETRKNAETSGGIVRDAVVAMSEIEKSSEKINHIINVIEDIAFQTNLLALNA
GVEAARAGEVGRGFAVVASEVRGLAQRSSEAAMDIKQLIESSSAQVASGVGLVNRAGESLTDIVDRVARV
ADEMSEIAAGANEQSVGLGEINTGATQLDQVTQHNAAMVEETSAAAVTLQREAASLERQVGRFTLRARSS
KPQGAAKPSAQTIKRADAVADHSAPEADMADFDIQPDVPKVANAGWTDF
>gi|99078156|ref|YP_611414.1| extracellular ligand-binding receptor [Ruegeria sp. TM1040]
MFLKKTMLAAAAALAFPLIASAEQGVTGDSVTFAQVAAFDGPAAALGTGMRLGITAAFEEANAAGGVHGR
MLKLDSMDDGYEPDRSAALVKTVIEGNGHIGLIGAVGTPTSSATQPIATEANVPFIGPFTGAGFLRDASH
GNIYNVRASYFAETEAWIEYLVDQQGMKSIAILYQDDGFGRVGLNGVTAALEKRGMSLAAEGTYTRNTTA
VKKALLAIRKAKPDAVVMVGAYKPVAEFIKLARKMKLDSEFVNISFVGSDALAQELGEHGEGVIISQVVP
FPWDMSIPVVAQYTEALKAVDAAAKPGFVSLEGYIVGRLAIAGLEAAGKELTRDSYLAALAGLSTVDLGG
VSMVFGADDNQGMDDVFLTRITADGQFEPIVSGGGS
>gi|99078157|ref|YP_611415.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MLRQIGPKGAKFLRRLNPLSSIRGKITFILLALLMMVGGAGYLILQSFDRVSRSVGEMTERDLPQLAQSN
GLILAATKTKDAMIEILMSQNPEALKNAATHVETASTELASAVAALPAEQQQAFEADLAKVGATLQASID
ARATSFANTDQLNAMTQDLQRLAADLQAVLLETADDAYFNTAMKGEDTITSIEETLFDLAENKFATLQTV
LEIRAEINFLSGITLAMSSTTDRSMLSIFGDLAISSRDRLSGAISSLDGTDAGATAGEDLAMISAALSDA
VAAGREGRAVDRDAVLSTRREADAVLSSTVDDLVFELTIAADDAATGNRDAIQGLLDNEVAFLNRLLEIS
SWLSAFQIEALKIATAQTFEQAEVASKAMQAASGALAGFSEFGGGILADQIAQMAAMADPDTGLAAFRIK
SLEANQAATEAASATVNAVLQIAGQASLRGLESQTTITNQALGIAADATEVQANLQTIGWIALAFVGVAL
LLSHVLIIRPLNAISLTTERLSQGDMSPVTGFNRASDEIARIARALTVFRDGLVEKEELTRIADEERAEN
QARQTAAVEAIGMGLARLARGDLTYRIDQELTEGYAQLKEDFNSTAQTLNMTVVDVVQLADSIRNGSSEI
SQASDDLSQRTESQAATLEETAAALEELTASVRSAAEGARDAENTTNKAREQATQNGQVVEQAVTAMQEI
ESSSSQIEQIIGVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRGLSQRTTEAARDIKELISKS
STQVEAGVDLVGRAGQALGDILERVTHISGLVSTIAESTDEQATGLGEANVAVSQLDQVTQQNAAMVEET
NAAGQLLRQDAEKLATLMANFTVSSISSSAQAPAEHGSSAPEQAA
>gi|99078158|ref|YP_611416.1| hypothetical protein TM1040_3180 [Ruegeria sp. TM1040]
MHHSGPRLHIIFGKIASGKSTLAKRLAAEPATVLISEDVWLKTLFGDALQTLEDYIRCSRLLRATMAPHV
VALLQSGVSVVLDFAANTPAQRQWFREIVEVSGVDHALHVLDVSDDVCLARLQRRNAEGSHPFTVTESQF
HDFMQHVTRPGADEGFNLVIHGAD
>gi|99078159|ref|YP_611417.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MSDIPKIMTQILEAPTLEQKYRVFADFMEGEFGYVGVNYGIFLDARSAQAISNHFIAKRMGMSSEWREIY
QKQGYGRRDLAMMMGAVTKRPILQTQFYQMQRQDDIPKPYAEVIEGVHDFVKCGVVLPVYANGRKGVVGL
YDPKGDAAKHDEKYRKYGTLIEALARHLHVSSSWAEETIAQTRLSEMNLRVLRLKARGLRVKEILHQIER
DNPKTVDNHMARVRRSLGARNDVEAVAKAATLGLLEPSGDPFDHEGADILPRGIGRT
>gi|99078160|ref|YP_611418.1| hypothetical protein TM1040_3182 [Ruegeria sp. TM1040]
MKQLLVLFLSLCLAGGGKADERLRTYYGMKLAVAGIPVFVPQDPLVRFGQVEAAPKGTWRFNVMPVFGYD
SNLNGGVPHDVVDINGLRFTVLEKDRAIGGLEAGVMARVRAEYYLAQGHRLSGALSARYTRALAHDLASQ
VATANACYHYDAPSWTFAQACVTAGLSKTELSKTQTETARISIGRVFDVGKFPKSFQLGLSKTNGNDADY
TQVHANYNVNTARATYAIGLMTRIEGEGHSEDKSAYMQITNSMIGRPVSTVFRYSTSSGGGFLGLQRDER
TASVTISVPLTDRLAFDLSYSDTRSPLQYFRKKTFGANFILTKF
>gi|99078161|ref|YP_611419.1| hypothetical protein TM1040_3183 [Ruegeria sp. TM1040]
MSPSNMGNSPYSTLSNPRLSNDFWTWILARPCGTRGINAGAFKRFIHIATDDDLRGKMKKYMMLTLLPLV
AACSGGGTTGGTTATPQTGQALTVRTTPMGAVVTKDAGYNDVVAVYNAAGDTPSTVNKTLPGLSNGVDVL
AQQGVNRWETEVERTVVASIAANGHKITRDRISGIDGAMVETYRLYDPNDALVAIETRGSNAATAAVVGS
VGYWGQWNGEVDGVNYEEGAVNIVVNGSTGQADLIVYDPTSAQTFINEASGSNTLTYDAASQQVTGSVVF
TTATQSASGEALLSLAGSTAVAGSTSAPELITGHAYTDANQPFGANIGMIGALDN
>gi|99078162|ref|YP_611420.1| hypothetical protein TM1040_3184 [Ruegeria sp. TM1040]
MSILILMVVQMAFSPDTALPLPTAALYAKLTATAVFWGGTFVAGRALAGQLDPLASATGRFGIAVLCLLV
LTRCVEGGLPRLTLSQLGLTLGLGLTGVVSYNLFFFAALTEMPASRTALFVTFNPISVTVVMVVFGQERM
TLRQVAGILVALFGALVVISKGDLLHVSMHFGRGEAYMCGAVLSWVGYTVIGRSAMRQLSALAATTYAAL
WGFAILAGALLWSVYWSGHGPAPQGLRLDVAAALFYLAIGGTVVPFVWYSEGIRALGAGRAAVFNNLVPC
AGVLLGFVILSEPLTAAMLAGGGVVILGVALTNRG
>gi|99078163|ref|YP_611421.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MTFGQLEIFVALSEAQSFTLTARRLGISQPAVSHALKSLETALNVSLFDRQGSQIVLTPIGAQLLERARE
ILGLSRTMQQEAASFRGLDTGSLRIGSFGATSSLQLLPDLMSAFHRAYPGIDVFIEEAADDIIVKWLEER
RIDMGFVVLPDDRFETIPIATDQFVALVPRQSALAKQERVTLSDLCNDPFIMPESGSVKIVSALFAAAGL
TPQTRYRTSQLLSTLSMVGRGQGVSVVAEMAVPAAHPDNPWVIRPLSPAHPRMIGLALHPTAVRSPAVTA
FLRIAKTLRTRPKCA
>gi|99078164|ref|YP_611422.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MTFAQIQTFLAVARLGNFHAAARQLNVTQAAVSARVRQLEEELDLRLFERGRRGAELTEAGRFLLPGAEA
IASTWTTISKDARHFYAGRVPLRLGGQLSIWDQQLVDLVIWVEETLGALPLALNFDHEMNVQDAIRNGVL
DFALTHEQPAPDLTGVALPAERLVLVGSEPFDLGQSDLPLFMNFQLGGQYDAFVARHLSGHAGQHIMMGN
CAMGLRYLRKRGGIAFFPVSMVVEDIQHGHLFPVQGVPEMELACNAVYHPSSVLGDLTAQIATAARSLRS
REPVVALDTMS
>gi|99078165|ref|YP_611423.1| metal dependent phosphohydrolase [Ruegeria sp. TM1040]
MLDKTHRPTWTRMEDASKEDFLAVMAYDDHFNAGLVDRLIAALISLDEDWTPYPINRYQHSLQAASRAYE
DGAEEEIVVAALIHDIGDILSPYNHGEVAAAIAKPYMSEKACWILKHHCVFQGYYYNHHLGGDRLARERY
KDSPYYDACVYFCHNYDQNAFDPAYATKPLEFFEPMLRRVFSNAGGHIELNETRDA
>gi|99078166|ref|YP_611424.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MQLNWDDMRTVLALVRCGTLAAAGDALGVTYTTVARRVTRAEKALGQPLFERHPEGYVPMPLARDLAVAA
ESMEREEHQLLRRVTGKDQTLSGRLTLTAPQLLIQAQLAPVLKRFIDLYPEVELVVKASNDLLDLNRREA
DLAIRISSEPGETLIGRQLTAQKSACFAAPEVAEAAARSPEAPLDWVLYTHHKAPPKVAWAIHPNSRVRA
RFDDMVALKAAAEAGMGALRMPVFLGRTSPALVPLRHLATMTYAPIWMLTHKDLRQSRKVAALKELLVPW
FRKNAAIFTEL
>gi|99078167|ref|YP_611425.1| hypothetical protein TM1040_3189 [Ruegeria sp. TM1040]
MVYAYANIIVANADSLASYREKAGDALAKHGGRVAQATPQQTILEGARDETGLGAILVFETVEGAKAWIN
DPALSDVHALRRGAGQSTITLMA
>gi|99078168|ref|YP_611426.1| formate dehydrogenase, alpha subunit [Ruegeria sp. TM1040]
MSDKITFTLDGAQVTADAGMTIWEVANGRGLKIPHLCHKPQPGYRPDGNCRACMVEIEGERTLAASCIRE
PSEGMVVTTNNARAENARKMVMELLVADQPAQEVAHDKSSHMWDMAELNGVSESRFPKLEEGHIPLLDDS
HVAMSVNLDACISCGLCVRACREVQVNDVIGMAGRGHNAYPTFDIADPMGESSCVACGECVQACPTGALM
PATVVDENQVGDRKDFDSETESVCPFCGVGCKVSLKVKDGKVKYVEGINGPANEGRLCVKGRFGFDYIHH
PHRLTKPLIRREDAPDKGLNVDPGNLMTHFREASWDEAMDLAAKGLIKLRDADPKSVAGFGSAKCTNEEA
YLFQKFIRQGFKHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIIIGANPIENHPVAATY
FKQFTKRGGKLIVMDPRGVGMRRYADEMLQFRPGADVSMLNAIMNVIVEEELYDSQYIHRWTENWEAEKE
HLRQFTPEKMSEICGIEPEQLRRVARTFAGAEAGMIFWGMGVSQHIHGTDNSRCLISLALMTGNVGKPGA
GLHPLRGQNNVQGASDAGLIPMFLPDYQTVTSDDVRRSFTDVWGGGDFSNEKGLTVTEIVDQVYAGNIKG
MYIQGENPAMSDPDADHAREAFAKLDLMIVQDIFLTETANFADIILPASTLYEKNGTVSNTNRQVQRVRP
AVTPPGEAREDWKITVELAQRIGLPWAYSDVSEVFAEMKLNMKSLDNITWERLEVETITYPSLHETDPGQ
AIVFGDGFPRPEGRARFTPASVIPPDEAPDADFPMIMTTGRQLEHWHTGSMTRRSLVLDAVEPEANCSLH
PRTLRTLGVEPGEMVRLSTRRGSIEIMARADRAVAEDMVFVPFAYVEAAANILTNPAIDPYGKIPEFKFS
AVRVEKAEGQIAAE
>gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
MAPLDNTSGVWKSGRGKGRKTPKGRQLDDQAHTEILDLLGARPRDRDLLIEFLHLVQDKFGHISAAHIRA
LSEEMRVGQAEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLKKALEDGMNPAQVRVLR
APCMGRCDTAPVLEIGHNHIDHATLAKVETAIASDDTHAHIPDYETYESYAAEGGYAVLQDLRESGDWEA
VQEKVLSAGLRGLGGAGFPSGKKWGFVRANEGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAW
AVEAERSFIYMRDEYPAVLEILRREIRALEEAGIVEAGYIDLRRGAGAYICGEESAMIESIEGKRGEPRH
RPPFVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNAVEKNGRKGLRSYSVSGRVQNPGVHLLPAGST
ILDVIEAAGGMLEGHLFKAYQPGGPSSGLLPAHMNDIPLDFDTLQPHGSFIGSAAVVVLSDQDSARDAAL
NMLRFFEDESCGQCTPCRVGCEKAVKLMQAEKWDQSLLEELSQTMVDASICGLGQAAPNPIRLTMKHFPE
EI
>gi|99078170|ref|YP_611428.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MSQPAFSMRIRSLEDKLGLSIVRRGNRFQGLTAEGQMIVERARGILDDAKALDQEIAAARGEVTGTLVIG
VVPTATSYAAQLVDRMHQAHPRVFVRLEVTTSLSIQQRLYDGTLDVGVTYSDSVGRDDMSVTDLYDEAYV
VFASEQMLSGHETQMSWRNAAQLPLSLLEPQMQNRRILDRIFADLDLRPEIVSESSGFMASLVMARAGSV
ATILPQALVEALGPLQGTRTLRLVDPEPSWPICLASVERQPELTTIRALKAVIAAGPL
>gi|99078171|ref|YP_611429.1| hypothetical protein TM1040_3193 [Ruegeria sp. TM1040]
MRLVTTVAALLLAVPAIASDEFTPALEAYMNDEIMNWANAPEIVAAIKAQNDAHAGLTQTQIEEMDQAWR
GTVATPQNDPIAPVLENPVADALRARIDASMGAMTEIFIMDEHGLNVAASDVTSDMWQGDEAKFQDTYGK
GAGSVHISGVELDESTQRYQGQISVTIVDPETGSPIGAITVGVDAESLL
>gi|99078172|ref|YP_611430.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MATTEIKSSALKGWSIFTKLSLLLAAATLVIVTFITVANKLIIDQTVREGVRTLGQNVTYSVASRSGGAI
RFGDQDKLLADLSLVIEMSEGRSLNGIAVNGDGNLIASAGDAGEAQLDLLSELALAAFESNEMQVSANGE
AFAAPATTSKGVPVGAIAMTWSSKAAMIGALQQQMIAYGAGAVLFFAMMFIASMVLRRIVSAPLKDLGTS
IVDIAAGQYDKPVEYLERADEVGRIARNVENLKQQLALAHAKETERETAQAHQKHVVDALNNALKSMSDG
DLTQAIDDPFAEEYETLRRNFNTTRATMVSIIDSVIESSERIRSSAEQISVSSADLSQRTESQAATLEET
AAAMEELNGSVRSAAGGAREVEGIMEETRATAEQSSKVVSDAVEAMSNIEASSVKISKILTMIDDIAFQT
NLLALNAGVEAARAGEAGRGFAVVASEVRALAQRSSDAAQEIKHLIVESTEQVGEGVRLVGRTGEELDKI
IGRVGTISGHVSGIATGAEEQSTTLNEINTGVSQLDQVTQHNAAMVEETTAASQVLRNDATQLARVVAIF
KTGDTKRKSQSEPEAPTVAQADVSHAYAAEESPQEAPAADAQILQKKAVGWEDF
>gi|99078173|ref|YP_611431.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MNVFLKAVAVGTMALHLATPAFADDIKLRFAGVFPIDHQGTKMMEQVAAEVNAANVGLDMTVFPASQLGS
GEALFEDVARGNIDFASAFIYSDTDPRLEFLNMPFLVSSYDDMDRVLRDMDSDYNRILQDITAEYGVRVM
AANPEGFVGIVASKEPDNWNTFDDKGMNIRVWSSNAVKATVESLGYRATTMAWGDIFPALQSGIVDGAIC
CTKTATYSIFAKSDVGSHFIEYNSLLEQTFYYGSERTLAKLNDEQRDVIQAAMSKASADFFAYNRENDAA
FGQKLIDSGYTILKLNDEDQQAMAEYVRKTIWPTMESAVGKDVIDRVLAAVQ
>gi|99078174|ref|YP_611432.1| hypothetical protein TM1040_3196 [Ruegeria sp. TM1040]
MTRITDELPRVIGVPMNWAMVLMKFLVVFSGAMMALTFGLVVVVRYGFGGDLFAYEEWLLAISIVGFFAG
AVLASERKLHINADILEVVFKSPRLIWWRGFAVLLIELLVTLFIVYACYASLADDFSFPRLRATPALRIP
FVSWRIAIMIAFGFMAMFSAAYLYVHIRKGLGLPLKSDRQEEAPS
>gi|99078175|ref|YP_611433.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MIIIGSLVIVCAMLLLGVSVFVAFGAVLMFIAVFGDQSITGYLPTGATGLRSLVLLAIPLFMIAGGVMER
GRIAAPLVAIAEMFVGHLKGGLSAAAVMACGIFGSIAGSANSTLTCIGGIMLPHLKKANYPEGKSAALLV
AASPLGLLIPPSANHILYGWVAQQHVLKCFLSTVIPAFILITLLIITNHFMLRKHDDIKLSAPPSPFFPA
LRAQGRVAGPALMMPIIILGGIYGGIMTPTEAAGIAVVYAIPVAIYFYRGLTWKGLIETFQKSGITIGVV
MIMIFMVLIVSDNLIAQGAPQIAQQMVYSVSDNPIVILLMINVVMILIGMLMDDISGLLLSTPILLPIAQ
SVGMDPIHFAAVIGVNLGMANITPPTAPLLYLGAQVSETPVAKMLIPTLMFIIFAWLPTLMLTTFVPSVA
LWLPELLLG
>gi|99078176|ref|YP_611434.1| dihydrodipicolinate synthetase [Ruegeria sp. TM1040]
MSQTIFSGTMPALMTPCKEDRTPDFDALVKKGKEMIEAGMSAVVYCGSMGDWPLLSDEDRMTGVERLIEA
GVPTVVGTGAINSKSAVALAAHAQKFGAAGLMVIPRVLSRGTSVTAQKNHFKAILTAAPDVPAIIYNSPV
YGFATRADLFFALRAEHPNLIGFKEFGGKDDLRYAAEHITSQDDQVTLMVGVDTEVYHGFVNCGATGSIT
GIGTALPKEALLLAALSQKAAQGHAEARMRARELEEAFGVLASFDEGTDLVLYYKYLLVLNGEDEYRLHF
NETDELTDAQRNYCEQQYSLFRAWFADWSKQGGIIAECM
>gi|99078177|ref|YP_611435.1| proline racemase [Ruegeria sp. TM1040]
MHVIDSHTGGMPTRVILDGSPDLGSGPLCVRAETLSRAHSEFCDSVLLEPRGQPGMVAALLVEPVDPECV
TGVIYFDADAVLGMCGHGTIGLAVTLAHLGRIDVGTHKIETPAGIVTVELHDANTVSVTNIESRRIHHAV
SVEVKGHGSFTGDLAYGGNWFFICDAPIEVSTGNIATLTELSIAIREACVQNGVCGPDGEAVDHVILRGA
SPNASSFSRNFVLCPDNEYDRSPCGTGSSGFVACLAASGQLAEGTEIVLESVIGSAYTLSYRNGPTGGVI
PRITGQAYVMAEATLLFATQDPFKAGIT
>gi|99078178|ref|YP_611436.1| D-amino acid dehydrogenase small subunit [Ruegeria sp. TM1040]
MGPPGPLSVPFQRAVPMSQDIVVIGAGIIGISIAAELVQQGHRVRVLDRSGVAAETSKGNAGAFAFTDVM
PLATPGIMRKAPKWLLDPLGPLSIPPRYALKIAPWMLRFWRASWRDRFETSVAAQSALMDLSRSALERQI
ATHGAEHLIQRDGQLQLFEGETQFRDSLPGWELRGQYGIKYDLLRSPEEIAEIQPGLDRRFTHAGFTPDW
INTTDPQIWTEHLAQSVVNAGGEIVDCDIQSISTVGDRVQLTHDGGSLTADKVIVAAGAWSHHLARTLGD
RIPLETERGYNTTLPAGAFDVRTHLTFGAHGFVVSRINGGVRVGGAVELGGLKLPPNYRRAKILLEKAKR
FLPGLDTAGGRQWMGYRPSIPDTLPVISRSPKSDNVIYAFGHGHLGLTQSAATAELVRDLINKNSSPISL
DPYRASRF
>gi|99078179|ref|YP_611437.1| proline racemase [Ruegeria sp. TM1040]
MRSSKTIHVISAHAEGEVGDVIVGGVLPPPGETLWEQRNFIANDETLRNFVLNEPRGGVFRHVNLLVPPK
HPEAVAAWIIMEPEDTPPMSGSNSICVSTVLLDGGLVPMQEPETHMVLEAPGGLVRVRAECHDGKARRIF
VQNLPSFADKIQVPLDVKGLGTITVDTAYGGDSFVIVDAEALGFEITEVEAKDIANLGVRITDAANEQLG
FCHPENPEWDHISFCAFCGPLRETETGFTSKSAVAIQPGKVDRSPTGTAVSARMALMSARGQMTAGQSFE
AVSIIGSSFTGQILDVTQVGTKPAIIPEISGRGWVTGIHQHMLDPEDPWPEGYRLSDTWGA
>gi|99078180|ref|YP_611438.1| hypothetical protein TM1040_3202 [Ruegeria sp. TM1040]
MGTSSSKPLDTVYANSAREMRQLQKQLQQLEDTVLTIVERRTPPTSAEIRELQDFDLISQTLGGMSVFFD
KLREQVGTEDCTDIERATEGVTLQLLRDRLRERQELFEL
>gi|99078181|ref|YP_611439.1| response regulator receiver protein [Ruegeria sp. TM1040]
MSLKDSLRVMVVDDMSTSRGILTQCLDELGVKNYLVENNGQSAFQKLATNPVHLVLSDYNMPGMDGLGLL
QAVRGNAATQRVGFILVTGKPTPEVIEVGKKLGLNNIIRKPFTVASMRQAIEQVVGRL
>gi|99078182|ref|YP_611440.1| MCP methyltransferase, CheR-type [Ruegeria sp. TM1040]
MSIAGPIEPFDDGIILSDQDFEAIAQFAYKHFGLAMSASKKPLVSSRLSRKLRKQNIKVFKEYLKQLDGP
NADQERSELLSLLTTNVTQFFREPHHFETLRNDVLPPLLEKAKKGGRVRIWSAGCSIGQEPYTIAAVLHD
MCPDADRYDIKILGTDIDPVVVKTAEQGQYPLEDFEGIPKQYKMKLEPGSKQGTGRVPQHLRQKVTYGVL
NLIEPFPFKGKFDAIFCRNVAIYFDNPTQQKVWQAFQRTLNPGGYLFIGHSERMSGPAAQHLKTVGITTY
VNTPG
>gi|99078183|ref|YP_611441.1| CheW protein [Ruegeria sp. TM1040]
MQSQAEVKIGDQEVKHAQQSEFVSFTVAGQAFCLKITQIREIRRWAPVTILPHAPMDVLGVMNLRGAVIP
IYDLSARFGLQQTEASERNVVIVVAVHGKPVGLLAESVSEIISINPEEIQDTPPVDSRYTMEYIQGIISH
DDTMVRIINLDAVISAPEQGLS
>gi|99078184|ref|YP_611442.1| CheA signal transduction histidine kinases [Ruegeria sp. TM1040]
MSGSIQDTFFEECEELLEAMDEGLTAIEGGDHDPEVVNAVFRAVHSIKGGAGAFGLDDLVAFAHKFETVF
DEVRSNKLQLDTKLIQLLLRCSDHLSDLVSVSRDGGSVDEEHNDVLIAGLEEYLDEEEEELTFEPMGLGG
PSVPLPLAMEEEKTYEIRFRPLKEMFGTGNEPFFLFQALSELGPLEVVLDDTELPGFDAMAMDDSYLAWN
LTLTTTEPKSAVEAVFEFVEGLCELSITSDKDEEEDAAALAALNAAFGVPGDSAEPETPAPFDVPAPAEA
TPMATSETTQKVETVKPESNKSEQRGPKPTLRVDLERVDRLINAVGELIINHSMLAQQIANLDVADLRDV
ETELEGFKNLARDIQEGVMSIRAQPVKPLFQRMARIVREASSATEKSAKLITEGENTEVDKTVIERLSDP
LTHILRNAVDHGIEKPEDREAAGKNRTGEIRLSASHRSGSVCIEIKDNGAGINRPRVKQIAIEKGLIPEN
ADLTDAEIDNLLFLPGFSTAKEVSNLSGRGVGMDVVKNAVTALGGRINVSSTPGKGSTFTIILPLTLAVM
DGMVVSVADQTMVVPITSIIETMRGSDDMINSLGADGTLLSIRGNFVPICDVAGALGLRKPEGDKPPGVY
LLVETETGQRSALAVDDIHDQRQVVIKSLDGVCGNIPGVAAATILGDGKIAMILDSESIIAASPTSATFD
SDRRMSNAIAS
>gi|99078185|ref|YP_611443.1| response regulator receiver protein [Ruegeria sp. TM1040]
MKTKVLAIDDSRTIRNLLAATLEEAGFEYHCAVDGREGVDMYDDVAPDVVITDINMPNLDGFGVIEELRG
DGINSKVPILVLTTESAPEMKARARDAGATGWITKPFDDQSLIFALKRVTGAVA
>gi|99078186|ref|YP_611444.1| hypothetical protein TM1040_3208 [Ruegeria sp. TM1040]
MRIAKMTTETQKHTLDLPNAFADLDPLVAFLNASRDKAVEVDCSKVAVMPSRCLQLLLGAEQQWRSEGLG
FSVTNVNEGCRKSLTLLGLEPNRFEDEETV
>gi|99078187|ref|YP_611445.1| methyl-accepting chemotaxis sensory transducer [Ruegeria sp. TM1040]
MIALSQLKIRYKLPAFLVGFALLASAILVTVSTVNYQRNAWITVENRFESIAADRASVLEALFQTMRADV
EVLAELPSTATAAQRISAAWSGVSDSPAETLRQMYISENPHPPHERFMMERAQKTIPYNIHHANFHPSFR
SLLISKGYSDAYLVNIAGDVIYSVAKQDDYGSNLLSGPHQTSNLAATFKRIMTAAPEEVLFSDFEHFAPR
DDTPMAFVGTQIVASSGQLVGVFILQIPDTLVSEIISPAEGLGVSTEVFVVGTDGKARSQSRFDDGHNVL
EDLAFSLQERAATEPQIFDSNATGIRGKPVVAMARQLPIEEKVWILAVEQDRDEVLAPVRGDRMLLILTS
LASALVMTGIGWWFARSFLKPIDGLCARMSEISEGQLDAPIPEADRADEFGHMGQILRTMQGDLQRAKDA
DAHRQHLQEQQAEVVRHISEGLVQVANGNLAHRITEPFDADYEKLRSDFNSALTELSDVVSQVTETADGI
RSGADEISQASDDLSSRTESQAATLEETVAALDELTASVKSAAEGARNVEDIVKQARGEAEKSDEVVRNA
VDAMTKIETSSAKISQIISVIDDISFQTNLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSQAALEI
KNLISESTQQVGEGVELVDAAGDSLRSIAERVSHISSLVSEIAQGATDQSAGLSEINDGMTQLDQVTQKN
AAMVEESTAASHLLKSDANKLAELVSHFETGQASAPKRAQPADDRRPETPRASAHGEDIAFDPPPPIATS
TGSAARDLWQDF
>gi|99078188|ref|YP_611446.1| CheB methylesterase [Ruegeria sp. TM1040]
MEAAYPGLQVLLANNLMMAYNQAEAGQPSFAFVEDGFTKLPEFEMMLALFSALDVRWVSVMDDQNSTPAR
RSSPLLNVGAGIFELTKSDSPRQFIQYFDMMIKAPRRNAPRAAANKPPVGRDDFKKVILIGSSTGGVEAL
RNVLVGFPINCPPTLIVQHTGKSFGTGLVSLLDRICPAKVVAADDNITLQSGHVYIAAGQPRHMGVTPRK
PFKIRMKEGPNISGHTPSVDALFSSAVPFARDVVAAILTGMGQDGAKGMLDLRKAGATTFAQDEKTAVVY
GMPRVAWEIGAAQKQVPLARMANAILQASKT
>gi|99078189|ref|YP_611447.1| CheD, stimulates methylation of MCP proteins [Ruegeria sp. TM1040]
MSNVFQNTSTVTVLQGDYKVTTDPKVVFSTVLGSCIAACIYDEQVGVGGMNHFLLASSAGSGGVSARYGV
HAMELLINGIMKKGALRSNLKAKVFGGAKMSANLSDIGANNADFVQRFLRDEGIPVISSSVGGTSARRVR
FHACSGAAQQTHVADDRRLGEEERAAVARTQAAPARKPAAADNVTLF
>gi|99078190|ref|YP_611448.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MTKTDPQKPKFRRENPEQRREQLIEATLRVIARKGVMGATVREISAEAGVAFSLIRHHFNTKEDLMYAAY
AHHMQRMAQLSLASAGDSDRSPIDRMRQCIHDTLSLPVTKSESLQIWAGFIQMVPHDARMKQIHIDTYLG
FRATLETLIKDALQAADSHSTPDQIEAKAIACNAVLDGLWLEGSMLPDMLPPAQLIEIAETTIMGIIGPH
SDT
>gi|99078191|ref|YP_611449.1| hypothetical protein TM1040_3213 [Ruegeria sp. TM1040]
MRTVGHALAQTLVEQGTEIIFGIPGVHTIELYRGIEGAGIRHITPRHEQGAGFMADGYARIAGKPGVVFV
ITGPGLINTLTPMAQARADSIPMIVVTGVNRRDSLGKGLGLLHELPDQLGLSQTISKHAEQVEDASALEG
VMARVFGALQGRPAPVHVEVPTDVMTLPASETVTIPDPEPKAASDLTPILDALARCESPVILAGGGCRTQ
NLALLKLAQRLDAPVVQTVNARGLMHAHPLTVPASPSLQSVRDLIAEADCVLALGTEMGPTDYDMYATGT
YPEMSNLLRIDICDDQLSRHEAACRLTGDLNEILPVLAEQSPGKSNARGSERAEKARLAARAEIEALTPG
YARFVSQIETLRDACPDAIFVGDSTQAVYAANLYYDHNRPGGWFNGATGFGALGYAIPAAIGAALADPSA
PVVALMGDGGAQFTLPELGVARDENLPILFVVWNNNAFLEISNAMEAAGISPTGCHPSAPDFEAAAAAYR
LDFRRIAPEQLQNALSEILPLNGPMLLEIDMTG
>gi|99078192|ref|YP_611450.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSADRLLNTLGAWLLALVWILPLAYAVWTAIHPAAYEARFDLFAPLSLENFAKAWNAAPFGRYFLNTFVL
VTVILFGQIVLCTLAAYAFARYQFPGRNVLFALVLMQLLIMPDILIVENYKAIRFLDLVDTIPAIALPYI
ASGFGIFLLRQTFMSVPKELEEAAQIEGMSTLGILIKVYMPLAIPTYLAYGLVSVSHHWNNFLWPLIITN
SVETRPVTVGLSIFSAIDSGVEWSVINAATLMTSGPLLLAFLLFQRQFVQSFMRAGIK
>gi|99078193|ref|YP_611451.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLQTRSWIHAWLLLFPGLVFLIAFTHLPALTTLWSSFFTTPRGRRPAKWAGLENYETLIADPVFWKVLWN
NAIYAAGTIPLSVVIALLMALWVNRQMVGRGFVRMAYFTPTVLPMIAVANIWMFFYTPGFGLIDQIGGAF
GFAQTNILGSANSALWGVMVVTIWKEAGFFMIFYLAALQTIPTTLVEAARVEGAGSWTIFRRITLPLLMP
TTLFVSINAVVNSFRMVDHIFILTGGGPDNASSLLLFYIYEVAFRFWDTAYAATLTVVLLVFLIVLAIGQ
FFLFDRKVHYR
>gi|99078194|ref|YP_611452.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MLMTKFKAAAAALAFAAAPAAADVDLEFYFPVAVGGAAADTIEELTAQYVAENEGVNIEAIYAGSYQDTV
AKALTAARGGNAPQLSVILSVDMFTLLDEDLILPFDDFATSAEDKAWLDSFYPAFMENSQTGGKTYGIPF
QRSTPVLYWNKEAFEAAGLDPETPPATWDEMVEMGKKLTLKDDAGNVTQWGVRIPSSGFPYWLFQGLTTE
NDAILANADGNEVNFDDPKVVEALDYLVDLSKTHEVMAPGIIEWGATPKAFFEGQTAMMWTSTGNLTNVR
NNAPFDFGVAMLPANKRRGAPTGGGNFYLFKGASDAQAKAAFDFVKWISAPEQSAKWTIATGYVAPRPET
WESEAMKAYAAEFPPVLVARDQLEHAVAELSTYENQRVTRIFNDALAAAITGQKTAEEALKEAQAKADAI
LQDYR
>gi|99078195|ref|YP_611453.1| ABC transporter related [Ruegeria sp. TM1040]
MTATAQGQAIALEQVRKVWGETVLLEGLSLDVPAGSFTAVLGPSGCGKSTTLRIIAGLEAVTTGQVRIGN
RDVTQMSPAQRGISMVFQSYALFPHLTVAENIVFGLKVAGLPRRERQRRLKDVADLLELGPYLGRKPAAL
SGGQQQRVALGRAVISQRPVCLMDEPLSNLDARLRDEMRREIRRLQLALGFTMVYVTHDQTEAITMADRV
VLMNKGQIEQVAAPEEIYNRPATPFAARFIGNPPMNLLSPAAFGAALEAAPESLRIGVRPEALTESAQGP
ILAEVKGAEFLGADTLVELTCAGGDILAKLPGTRGLTPGETLRLAVPPEQIHAFDLTRNARLEDPGLIAR
LQEIHS
>gi|99078196|ref|YP_611454.1| ferredoxin [Ruegeria sp. TM1040]
MPRNSERTVWTDAEMLECVSIIPEMDNTASFTFKAPSGALFEYDAGQFMTLEIPVPGGPLHRTYTISSSP
SRPRTITITAKAQADSIGTRWMLDNLRPGSRIKALGPAGLFTNAGSMAKKFLFISAGSGITPMMSMTTNM
WDDGDNLDIVFVNCAKRPSEIIFRQRLEQMASRSEGLDLKFVVEEPDPYRPWTGYQGMFNQLMLGLMAPD
YLEREVYCCGPEPFMQAVRDALAGLGFDMDNYHQESFHAPVETSAEQPDFDDVVPDDDTKAEVTFAASGV
TAKVAETDTILAAARANGLNIPSGCTFGVCGTCKVKKTSGEVHMVHNGGISDDDIDAGYILACCSNPIGK
VAVDI
>gi|99078197|ref|YP_611455.1| Rieske (2Fe-2S) region [Ruegeria sp. TM1040]
MHSNINTLIANHRAGHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVR
GADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRE
LAGLIYICLADEAPDFERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALC
RTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRW
LGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDLQRLTEVWI
ATNDEDREVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLKRNSGPHAVAAE
>gi|99078198|ref|YP_611456.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MKKFLGLTAVASVSFAFAAEAMATEWNVSVWGKRRAFTEHVEKLAELVSEKTDGEFTMNISYGGLSKNRE
NLDGISIGAFEMAQFCAGYHRDKNRVITVLELPFLGISNLEEEVAVSSAVYNHPAAAEEMAQWNAKLLMT
SPMPQYNIVGTGDVRDDLAEFEGMRVRATGGIGEAFKAVGAVPTSVTATEAYQAMESGVVDTVAFAQHAH
LSFGTINRADWWTANLNPGTVNCPVVVNIDAYESLSDAEREALDSSVAEALDHYLANYGELLKKWDSVLE
EKGVEKVEISEEVLAEFRSTAAEPIRDAWIKDMEAQGLPGQELYDLVQKTLADHRNGS
>gi|99078199|ref|YP_611457.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MAGSSTVLSDASILSKLDRALLPIERVTAILSGLAAFSLMFLAAYSVAGRQLDRTFLAPFFDKIGLMDGP
LPGYVDYIEALMPLIAILGVSYVQREGSHIRMDILVGRLKGRALWLFEFITVFCMLVLVIALVWGSWAHF
DRSFDCARPLCSRDSSIDIGLPIWPSKLVVPVALAVLSARLLLQMTAYARAFVLGLQSPAAVPLIQSVAE
QAAAEAEQLKEVGND
>gi|99078200|ref|YP_611458.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Ruegeria sp. TM1040]
MTDIEIGLWVTAGMMVLVVLGMRVAFAAGLAGFVGLVWLRWNGFDYNPERFWKAVEISVKIAGQVPHSKV
SSQALSLIPTFILIGYLAYYARLTTALFEAAKRWVAWVPGGLAVSTVFATAGFAAVSGASVATAAVFARI
GIPEMLAVGYNKRFAAGVVAAGGTLASLIPPSAILVIYAIIVEQDVGKLLLAGFVPGAFSAVVYAGLIIA
IAMIFKTVGPPVTGFTWRERLVSLPPALPIFAVVVIIIFFVYNPFGEAWGTPTEGGAVGAFIVFLVALMR
GMRMRELLDALLETAKLTIMIFTIIWGVLIYVRFLGFADLPSAFADWISTLSASPMLILICILLAYAVLG
MFMDAIGMLLLTLPVVYPAVMALNGGEMVSAADSAFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFV
VAGVRDDLSVQDVFRGVIPFFIADAVTIALLVAFPTIVLWLPSLAG
>gi|99078201|ref|YP_611459.1| putative ABC transporter, periplasmic substrate-binding [Ruegeria sp. TM1040]
MKRTLTALSFVLMALAPAGFADPIRIATGEYAPMTGEALPNGGVVNGLVARLAEDAGIEIAFEYMPWNRG
LELTRAGQRHAASYWSDLADQSGLIEVGPVSSERIVFFYRKDKPLPEWTSLGDLAGRTFGATLGYPYSEE
FWALGENGTYNIQTAPNDISNFKKLLGGRIDAFVIDELVGWDMLNQNFSPEDVSQFAASEMPVTETLAYL
QVSSEIEGGADIAARLQAAYDALQASGELEAVKTALNSEAGIPAN
>gi|99078202|ref|YP_611460.1| hypothetical protein TM1040_3224 [Ruegeria sp. TM1040]
MKFISKILALFGARTGRIGAMIRASLSVLGSDLQVFVPFLCLFVLKAGRGLLALVILYLGFVTQDWERLF
PLMLVFIIYLPVEMILQTFLQAAMSQMARDTLIEGHINRFAIVKTLLGNLFSLLFIGFVSYLLRRASESK
QSGFLGFLVAIVVFVVAEVWDLVSNFGISAIVVERAGVKTLVARLKELRSHVPETLVGVIGIDLAGGVAQ
SLFAGGVVLGLFGGGAVGYQFATSLPDAFLAHFGEIPVNTLPTLSLLALSFILSAVIASATVLAKSLYFT
SLYLFVVHKDEVPDDKLPALARMLQEGKDASS
>gi|99078203|ref|YP_611461.1| von Willebrand factor, type A [Ruegeria sp. TM1040]
MQHKIMTAAICAALAAPVAAQDLTRSTLVLDASGSMWGQIDGVAKITIAQDVMQHLLKTLPENQELGLMA
YGHRRKGDCNDIEQLIAPAAGSRQAISQAVTQISPKGKTPLSAAVMQAADALRSSEEKATVILISDGEET
CGLDPCAVGAELEARGVDFTLHAIGFGIADDAARAQLQCLAENTGGFYRDASSASELTAALAQVAVTTST
PDPASATLVGPATAQAGRTIDIIWQGPGEEGDWIGTLAPGADVGAFSSRIGVEHGNPAPMPTPPQAGTYE
IVYVRAETGAVLARAPLEVTPMVASVTAPSTGLTGGTVTVTWQGRGSEKDFIGIAPKAEGFPATTFYFET
TGPEQQALRLPSQPGDYEIVFVATTDPWTVLDRTSITLSDPDLSLKAPSQVAAGQDFAVLWNGIAPNPAD
YIALARAGDDLPHLVSYAHTESHLTRLTAPEEAGAYELRFFYAEGDRIVTAQPIIVD
>gi|99078204|ref|YP_611462.1| hypothetical protein TM1040_3226 [Ruegeria sp. TM1040]
MQCVLGFTAGLALLPASVFAAECLPASVHFPADGPAEYFVPDADEAALRAQTHGAAPRADHVLVTHEDEG
YWVPRTELDAAQVVLGTSAESFRYRGPDHCAPTDLPLDPLDAESAPTEDSAPVAASGLQPQSGLWKLEAT
PVQFEGCPDVIGQSMAGGMAALPAEATTPQHLTFQTPFHPSQLRMQQYASSWRSTGPNQWVTRAMEDVFS
QSPAYGGKRSYMEWTLTVHDTSRISHRSELYVVMPPEAVAAFKTDHCAAISTGHWIRVGD
>gi|99078205|ref|YP_611463.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MEHQDDITSLIGSIYATAVDTEGFAALLELADTRLNNDTHRRRFEALRSNFETHVVRAEAIIGALPQTGL
TQENPNDPCPRFDLDRRLHVISPNPAAQDLLGLCDGAPLDTLELTTDTLRAIKSFATGQSDHAPVLRLTR
KDTGKPMLLRCQTRGGRETVQCFGVDIPWHDGASSAMRALYELTASENEVLGLLVEGHSPQEVAEVRDRS
IETIRQQIKAMFRKTGTTGTLELLHLGRVVCVSSAQIEDSTRAQDQNHALRLPDGRSMSYSDIGSPSGRP
IIFLHGCLGGNRLPKAAEAKLGRLGLRWIAPARPWHGSSDGWPALVSDPSRYGEDLRTLADRLDLKDITL
VGYDAGAALACCAAGGLGARLRRVIALAITPPMQSMRDFAAAPTQQRILALAAKTSVPFLRYLSIVGDRK
LRLEGREAFADTVFRNAPADLRACCDPEVLDLMWEGHFFHVAQGNDSFINDCRLIASDWSAKAKLMCAPL
HLVHGGADQIVPLSRARSFAQSFGASLTVIEHAGHSLPFSHWLDVLHAVTEDGPE
>gi|99078206|ref|YP_611464.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MVPKNLISDVFDLVERTGTLGEGCATGVDGLFAFAQTKTTECAAAFYEPIMCLVLQGAKEAYLNGRVVRY
SAGDTLIVSHAIPVESAVMQASPDAPYTALALRLDLAMARSMNDEIGERDDSANAHSLNAAASDAALIDA
THRLFNVSKDPVEARTLAPLILREIHFRLLRAQHGGMLRQLLNQDSPASRIAQVIATMRENFKSNLPVAD
LASECGMSLSAFHEHFRSVTATTPLQYQKDLRLLEARRLLVTENRSVASAAYEVGYESPTQFSREFSRKF
GMPPSMHKPAAPLVPAPTT
>gi|99078207|ref|YP_611465.1| (2Fe-2S)-binding [Ruegeria sp. TM1040]
MAISLKLNGETHTVEAEPGTPLLWVIRDELKLTGTKFGCGVASCGACTVHMDGAPIRSCQTYIEDVEGAE
ITTIEKMEDDKVGAAVQQAWRELDVVQCGYCQSGQIMSAVGLLRENAKPTAEDVDNYMYGNACRCATYQR
IRAGVLRAAEILEA
>gi|99078208|ref|YP_611466.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MTANISRRGFLKTAAAAGAVLYVGATADGAAAAGSSDAMLNPFVKIDSDGNIIAIIKHFEKGQGPATGLS
TLIAEELGVTMEQIGYEFAPSDPQVYNNLLFGPFQGTGGSTAMANSWMQYRTAGAIAREMLIKAAAQAWG
LDTADLDIQDGMVTGGGKSAPLGDFVAAAAEIAPSETPRLRDQSEWKIIGKESTRRLDSAIKVNGQAQFG
MDLHLPNQMVVMIKRTPQRGGVVAGFDDSAAKDVKGFIMAMPLPTKHGVAVYAENTWTAMQARAAVEVDW
DMSAAETRSSQEIRDEIMAALDAAPVYNVNKADTNAVALAVDEAAQVLEKTFYFPLLAHAPMEPMNCTIE
QTADGDIVLHDGAQMPTGPHMAYQQIFGLPAEKIHINTMLAGGSFGRRATPDADYQVEAGLAFAMTDRSR
PVKLVWDREDDIRGGYYRPATGHKVRIGLDADGKITGWEHQVAGQSIMKGTAFEAMAVKDGIDHSTVEGL
ADNPYVIPNMAVGLTDTEKATSVLWWRSVGHTHTAYVMEVMMDMAAKAAGRDPVEFRLAYLEGGNKDAQR
KAGVLKLAAEKGNWGNPAAGNVQGIAVHKSFGSFVAEVVEVSGTPDDGIQIEKVTAAVDCGIAVNPDVIR
AQTEGAIGYGIGHAMRDQITLDGGEVEQYNFPDYEPLRISDIKAIETHIVASAEAPTGIGEPGTPPSAPA
LANAIAQLDVRVAELPMSENGVSFA
>gi|99078209|ref|YP_611467.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MSWFRDLGVRVRLSAALAVMFGLMVLVSGIGLRVLDRTEVWMNVLHRDTLTEVEAAMDLSRDVSELATSA
PFLFALFAPYQLEQEVAAVMENLERVRQSSGNDPELDLPLARLGLAIEDLAQALLPQSARQAELKAIDRA
LVRLNARSRRMSQDDLLPLEAQQDWGGLQQLTSVALGAARAEELIELGGFARDFQRLSGQLQSLSRQAPR
ETYDEIRNVVQRGGGLFVLKHGNLSARLDAENALFRIRQETRRVSAFAETKVAQAEDRLSRARAETSDTL
AYARNAFLALSIASLIVAVTSSVYVSRHVARNLERISGAMRRLASGNLRVDLPAPPTARDEIGQLFTAFG
VFRDNARKLDRRTAQMRHQNALFSRVFQNIKDGVAVEAADGRIIAENDNLRRLLRLPPDPDGTSDHMSAL
IAVSPFCRNAGGDERGGFDEYNDPDGNVIEIHLSPLPDGGQVWLISETTERKRMEARLEAIRRVEALGKV
SGEVAHDFGNILSSISGNLHLLEHAEPEQRRDLHERLGAALDLGASLTERLLAFARKQHLAPQVTNVSEL
VSGMADLLEIAIPKHVSLQVEVSKAPATCLVDPGQLESAILNLCINAGQAISATGSDTGRIVVSVTAGER
VEVAVSDDGCGMSEEVLRHATDPFFTRKPDGGGTGLGLSMVDGFAHQSGGRLDIQTSTQGPMRGTIVTLS
FPHQVYNSEENSSGGPWMALVIDDDPVSLERSCRLLQELGAQTLRCATYAEAVKALEGLDHLDAILTDLW
LDDGFSGRDLIRRAQECFPECRCALMSTRGAPTDLPRDVVFVEKPVSKETLREI
>gi|99078210|ref|YP_611468.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MQAVSPKPEAGPVIAIVDDDAQVRETLSALMHESGFESVCCPDIETFHALGDPPPVDLALIDLRLRGESG
LTLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYGHASARTVTSG
KRQITFGEKRIDLDARRLLDSAGEEVPLTNAEYRLLEFLARNPERVVPREELLEALGADTQRYVDRTVDV
LILRLRRKIEPVPAKPVHLQTRRARGYVFHLGTE
>gi|99078211|ref|YP_611469.1| phosphonate-binding periplasmic protein [Ruegeria sp. TM1040]
MTPFITRAIGALGILTCSTIAAQAQDCAERGALDLQYCDVNGDLVADTPTDPAELSDPDTLVFAYTPVED
PAVYADIWEPFIEHLADVTGKDVQFFAVQSNSAEVEAMRSGRLHVAGFSTGPTPFAVNLAGAVPFAIMGA
EDGQFGYKLQVFTQADSDIKDVSDLAGKRVAHTSPTSNSGNQAPRALFPGLGVEPDKDYEVVYSGSHDQS
MLGVVAGDYDAAPVASEVVERMAERGLYDPADVRMIWESDPFPTTSFTMAHNLDPALAEKVKEAFFTFDF
AGTALGEEFDGVSKFVPITYKDQWAVIRQIQASNGVEYTPQGLAGN
>gi|99078212|ref|YP_611470.1| phosphonate ABC transporter ATP-binding [Ruegeria sp. TM1040]
MLKITNLTKRYGSGDPVLKELNLTVEGEQLTSVIGSSGAGKSTLLRCINRLVEPTSGSVELNGTEFTTLS
RRELRSARRRIGMVFQGFNLIDRLTVMENVQAGRLGYISTWAALTRRYPKDDIRRAFELMERVGIAHYAD
KRADELSGGERQRVGVVRALMQRPEILLADEPTASLDPKTSEQIMSLLRDLAQELNLPVIINIHNVTEAK
EYSDRIVGMRYGRIIFDDKPAALTRDEMDTIYAGVPAQDRAEVGAVA
>gi|99078213|ref|YP_611471.1| phosphonate ABC transporter permease [Ruegeria sp. TM1040]
MSTRPDNLPESWRKPPFIANAALRYVLYLGVAVYIIFTLATLPIDWDRVADGMTRAQRIFNGAFPPSFDR
AGLLFDGFMESLKIAILATVGGILISVPLAFMAAANIAPKPIYLLGRGLIIIARSFHPVIVAIIFVKAVG
FGPFAGALTLVVYSVGFVAKLLAERIEEIDFGQVEAMRSAGAGFLTTQVYAVLPQIMPRLVGLGIYQLDS
NLRASAVVGIVGAGGIGATLANAFGRYDYDFALAITMVIVGVILISEAVSGVIRKRIT
>gi|99078214|ref|YP_611472.1| phosphonate ABC transporter permease [Ruegeria sp. TM1040]
MKSLSEPHSLSEALEARDDWARFTPKQRLIRYAGFAAAAAVVAWALGSIDVIWAWVWDSPAQMADLFGRM
MPPDPSNLPSILTAIWQTVNIATLATLIAVFVSLPVAYIAAQNTTPNRACLWLGRFILVSSRSVNTIIWA
LLFVAIFGPGIVAGIVAIMFRSIGFLGKLLGEAIEEIDRKPVEALEACGASQFKIVLYAIVPQVMPAFFA
VSILRWDINLRESTVLGLVGAGGIGMILQGAIDTFNWPEVSMVLLTILALVIFGEMVSSFLRRKIL
>gi|99078215|ref|YP_611473.1| DSBA oxidoreductase [Ruegeria sp. TM1040]
MTSPVLTIDFFHDAVCGWCFVMSPKLRKLAAEFPIRIRHRSFVLQDSPAKLAAAFGSAEKAKSAILGHWE
RCAEHDEGGRINVEGMRRQRFPYPSGLLSAKACKAAELQAGDAGHWDYFDAVQAAHLTDNRNIADERVLL
DVALVCALDSNRLRKDMHSPEVARLVSQDRQLASSWWVSAVPTLVVDGGQSQLRHGSLEQMRAELALLLA
DRVARVPAGNRQQ
>gi|99078216|ref|YP_611474.1| hypothetical protein TM1040_3238 [Ruegeria sp. TM1040]
MKLFSKLALAAAVLWSPVHGHAGAEDTAGLLKLEYTDGRSITLGVEDVNTVLHSVGVRVSTVAIPEQARP
ILEASRHRAITAEEESQLITDFALSRKDLLTEIALAGREPTVENGGSLTTSEPGVAPYPKVYDMNKMDAQ
TRIWVHKKFGPLHVNHAEDGTGIDEVMTIVSGGPWVWFFELPGDVIGKLTLGHVGLEGEAWRISYPGIRP
HGGFLDPEYGLVVAYAHGPEQFEIHFDADNVAGSRLNGTNAWIDMSGEKPLLLDGPLTGN
>gi|99078217|ref|YP_611475.1| putative glutathione S-transferase [Ruegeria sp. TM1040]
MLIDGALTEKPKQGDGVFRRMSSGFRGWIEPHRDAEFPAEAGRYHLYVSMACPWSHRTTIVRALKGLEEI
ISVTQMDPLAGPDGWRIDTEAFDPAVGVPSDDYLYQVYQRAEPGQTGPVTVPVLFDKRSNRIVSNDSGQI
MRMLNSAFDEFTYRAPDFYPPDLQQDIDRISDEIYAPINNGVYRAGFATTQAAYDEAITALFEKLDELDA
LLATRRYLTGERLTEADWRLFTTLVRFDPVYVTHFKTDRKRIADYGNLSPYLRDLYQVPGVAGTIDMNAI
RQHYFLSHRHINPHGIVSAGPQLDLNRPHGRDIPVLGS
>gi|99078218|ref|YP_611476.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MEGMGDIPVVVAVAETQGFAAAARRLGVSKSAVSKRITQIENRLGAQLFHRSTRNVSLTEAGEHFYSHAV
RAQEAAQEAEDSVLALQEAPKGRLRVNVPMAFGRLHVAPLISGFLARYPGVSIDMVMDDRMVDLFADGFD
LALRGGTLADSALVARKIAALRNVLVAAPTYLARHGAPQTVSDLRFHNCLQYSFSRDFQEWVFDCDGKAE
TFRPSGSYSVNNGEALREAVLGGTGIGRLPTFTAGPDLASGRLVRVLPQCQLPSQTLYAIYPERRYLPTK
VRVFIDYLLEHLGGEIAPWDQAKLG
>gi|99078219|ref|YP_611477.1| hypothetical protein TM1040_3241 [Ruegeria sp. TM1040]
MIVTAANAANLGVYRSMQGHVSGHASDEAQSLKLETHHAITGTKKASNGHGMALVLDRETSAHGKPAGPK
EFEAVLEVQDAIRAGDITQLNAGSIDMSRYMAGVMSGNVEGPMPMSALLARENYERSLKALSKAA
>gi|99078220|ref|YP_611478.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Ruegeria sp. TM1040]
MSIDNTAAVTDASATTPTAQGEAQAMLDAVSRVHAMIEFELDGTIRTANENFLKVTGYQLDEIRGKHHRM
FCDPDYVASDTYKDFWLQLAMGQPASGEFHRIGNGGKDVWIDAHYTPILDAAGKPYKIVKLATDITAQKE
SEAVNLRRRAGFEHSSVAMMTVDRDFVVKDINAATNTLLDEYKDVFSEVWPGFDPTKMIGSCIDRFHKNP
AHQRNLLSDPKNLPFKTDITVGEMKFALNVDGIFDDDGTYVGNLLEWADVTEARLNAGVLNALDRSQAII
EFKLDGTITAANENFLAVTGYGLQEIKGQKHRIFVDETTASSTEYKDFWQSLAQGETRTGEFRRFAKDGS
ELWIQATYNPIFDGNGDVFKVVKFAVDITDQMKLRETAKTLSLVANETDNSVLIADADGRIEYVNPGFTK
LTGHEYKDVIGKKPGELLQGRHTDPETRKRIRENINAQKPFYDEILNYTKDGEAYWISLAINPVFDEAGK
LQKFVSIQTNITDVKLQQQDFNCKLEAISNASAVIEFTPDGNVIDANENFCATTGYSLEEIKGRHHRMFC
ERDYAASPEYTAFWERLRSGISDTGKYQRFGKGEKEIWLSASYSPIFDQENNVVKVVKFANDITTAVELE
REVSRIASEFVTRSEDISGQANKVAEGAQSLGCTTEEISASIEELSASIDSIAQNSKHSDDIAQSTRDEA
DLGAKAIERSIESMELINSSSEEINEIVKVISEIASQTNLLAFNAAIEAARAGEHGLGFSVVADEVRKLA
ERSSQATKEISKLINETVKRVSQGSQVSIEAGDAFKKILSGIKDTTDSIKQISVAAREQQTAARDVSDAI
QNIVDATEQAVIASDAIAASTNELNGGAQELTQEIAKLGQ
>gi|99078221|ref|YP_611479.1| MCP methyltransferase, CheR-type [Ruegeria sp. TM1040]
MPQDNIELHLGSFNKLRELIHQKTGITVAENRKGLLESRLRGRLRETQDTSYSGYLDRVANDAAELQELI
DRITTNETYCYRTPRVWDYFQKEFLPAFCEKNLPRPMRAWSAASSTGEEAHTIGIFCEEVRQNAPGFDYQ
VFGTDISSRVIEKAQEGRYQGKAIARLQREQPSLFQRHMVGNKEDGYSVRPDIKSRLTFKMHNLIKPLVP
AQKFDIVFLRNVLIYFSSVEQERILRNVARQMQPDAVLIIGESESLTRLDTDFNQVSPLIYVLEPD
>gi|99078222|ref|YP_611480.1| CheD, stimulates methylation of MCP proteins [Ruegeria sp. TM1040]
MDKVEVSELHVRIGQVKIGSPGQVLTAILGSCVGIGFFFPQRQIYGLAHCLLSQSSSQPVASSAAQTGRT
REDGQLVGNGRHVDKAIESLLKMMDIQDEERRQLRVVLAGGANMSMPFDTPPSQLVGSVNAKFARQAIRS
AGLRLLGDDLGGLNGRRISINCDSGEYDIQQIPRLGGTV
>gi|99078223|ref|YP_611481.1| CheW protein [Ruegeria sp. TM1040]
MTEDVYDLSDHALPCAEAGRSPAEPSDAVEASAFADPLSESAREIETFGSFLIKDMEFALPVSVIQEVVN
EPEDVSPVPLSPSYMIGLFNLRGMIVPMVDLRQIFGLPAAESRGGRKIVIIEDGEKHLGLVFDRTGEVVH
ARRAERVAFLSRENGIKDVISEGVLKLDNGRRLLQVLDPYAVLKLEKVPRLAKDEPLARRRAAKGARKHC
VSFEVGHSKYAFDLEHVQEVLEVPEIRHSVFTSGHILGTIDLRGRIVPVVDFRGFVGKQRTDSRQVAASR
SKKLLIMNLLRGQIGLLVYSIDNIVQYYDEDVMPISKLAMPHEAIFKGCIAFDNSELIMLFDHEETMKQP
DLVAAAQCCQELYPGAITENVEQDTPSKQRRTFITFSADTRFAMDITKVREVIESPCDLMKPPNVAKSVA
GLFNLREEIITLLDLRILYDLKETQTTHQKVVIFQSEGQKYGILVDTVNEIIMTTADRVLPFQASTARGN
TAVHEDVSEMVQVAGGNNQSVSTMVLDVDALVRHTIDH
>gi|99078224|ref|YP_611482.1| transposase IS3/IS911 [Ruegeria sp. TM1040]
MKASKFTDAQKAFIIKQAEDGTSVAEVYRKAGISTATFFNWKKKYAGLMPSEMKRLRELEQENARLKKIV
ADLALDKEMLQDVIKRKL
>gi|99078225|ref|YP_611483.1| integrase catalytic subunit [Ruegeria sp. TM1040]
MRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKT
YRIYKELGMQLRSKTPKRRVKAKLRDDRKEAVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLD
ARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAYANDVTLDFSRPGKPTDNAFIEAFNG
RFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
>gi|99078226|ref|YP_611484.1| transposase and inactivated derivative [Ruegeria sp. TM1040]
MTEQTYYCWKKKYGGVGTEQLRELKRFQKENEQLCKAVSDRTLNKLILVEAAKGV
>gi|99078227|ref|YP_611485.1| transposase orfB [Ruegeria sp. TM1040]
MQAPKRAEPPWLNDGSCLRLRPERRDHVLSYDFVHCRTEDGKAFRTLNIADEYSRECLAIRVDRKLNSGN
VIGVMNNLFTLRGLS
>gi|99078228|ref|YP_611486.1| signal-transduction protein [Ruegeria sp. TM1040]
MPASFTPKTRGSETSDKKTSSQTLDTNMSAARATVGDVLASKNGELYWINPEDTVAKAVEVLRDRGIGAL
LVKNAQGDLVGILSERDIVRRLADTPGATLPQTVEGLMSRDVITATTDQSVVEVLRLMTDGRFRHMPVLE
QEQLVGMITIGDVVNFRLTALEYEALQLKQLIVG
>gi|99078229|ref|YP_611487.1| hypothetical protein TM1040_3251 [Ruegeria sp. TM1040]
MTDLTLSPAGATVLFVIACLAGYRYRTVWKAEGPRLQLWIFGLIAAFCLLTLGFVPLKAQ
>gi|99078230|ref|YP_611488.1| inner-membrane translocator [Ruegeria sp. TM1040]
MTTQILPLNPFGVIRKIFVRVGVLPFFLLAALVVFSLLSPKFLTGQNIVNVMRQSVYLVLVSLGQMLVLI
SGGFDLSVGTAIALTSVVSATAMVWLAGIFPDAIFLVILLGALAGLLAAACVGLLNGIGVAYFDVSPFIM
TLGASSLAGGAALLLTGGVPVSGLPFAFADVFGFGRLWGVPVPVIVAMICIAVMWVFMSRTSLGTQVYAV
GGNIKAAHLSAINTKRTLMMTYVGCALIAALTGLLLTARVESGEANLGGSLTLESIAACVIAGVSLRGGI
GRVENVVLGGFFIVLVQNGMNLAQVSSYMQMVLLGALLILAVIFDQLRYRMIMGTN
>gi|99078231|ref|YP_611489.1| ABC transporter related [Ruegeria sp. TM1040]
MSKLIETRGLTKKYPGVVALDHVDFDLEPGEVHVLFGENGAGKSTLISMLAGANAPSEGRLLLNGEEVQF
ESVADAQAKGIYTVFQEFSLIPTLTVAQNIFLGWELRFGPFLDHRAMRARAREMLAELGFDIDPAAIVAQ
LSRAQQQMVEITKAFHGDLNVLILDEPTASLTDREVDHLFEFVAKLKAQGVGIVYISHRIQEFERIAERV
TVLRDGAVIGTVAMAETDEDALVEMMTGRAFDQIYPSITFSPGETLLEVSDLTAPGISGACFQVRRGEVL
GVAGLVGSGKSRLFRAVMGLTPVQSGSIRFKGADITNAPTRKIITRGMYYLSPDRKAEGLDLAKNARDNL
AVNIISGQRHSGHGPFIPWGAVNARIDQISDHVELHAGYRSKPTSQLSGGNQQKVLFGKCFGQDADLIIF
DEPTVGVDMGTRAALYLLIKELAEAGKAIVVISSDLPEAMNIAHRLLVLAHGTITARLSADEMSEDTVLK
YFFDETGASQ
>gi|99078232|ref|YP_611490.1| TMAO reductase system periplasmic protein TorT [Ruegeria sp. TM1040]
MKLFLNTASALLLSVALPATAQEAWFPYPAEEVTPAFSADGSVAEITYEPLAAAEKPWNICVSFPHMKDA
YWLGVDYGVVAEAERLGVNLNVVEAGGYTELNTQISQIEDCVASGADAVIVGAISYDGLNNVISEVAGKG
IPVIDVINGVSSTEIAAKSLVSFRTMGFETGKYLAEKHPAGADPVTVGWFPGPAGAGWVEAANTGFMAAV
EGSAVKVLEPRYGDTGKEAQLKLVEDVLQANPEISYIAGTAVTAEAAQGVIRERGLKGEVDILAFYMTPG
VYSGIQRGFITGAPADSMVIQGRVAVDQAVRVLEGKDYLKHVGPKIFVVDQDNVKDVARENILPPDGFSP
VFSVTQ
>gi|99078233|ref|YP_611491.1| Urea carboxylase [Ruegeria sp. TM1040]
MTLEIVKPGLATTVQDLGRPGYFHLGIPEGGAMDRLALRAANMLVGNEDGAACLEAVFMGPEVKFGADMT
VAVTGAELPVLLDGMPRNTWSSISVKAGQVLSFGFLKEGARIYIAVSGGIDTPPALGSRSTYAIGALGGF
EGRPVAAGDVIPLGRGAGMPEGRIVPDALRRRPAKPAALRVLPGLYWHRLTEKSQAAFFEDDWTVAPEAD
RMGYRFRGGQAMEFVDRDQPFGAGSDPSNIVDGCYSYGSIQVPGGLEPIVLHRDAVSGGGYFTLGAVISA
DMDLIGQLQPNTPVKFMRVDMDQALAARKARKETIEQIRQALS
>gi|99078234|ref|YP_611492.1| allophanate hydrolase subunit 1 [Ruegeria sp. TM1040]
MKTRYTYGGDEHVYVEIDDEMSLDAFFIALSLSKLVREANIPGVTEICPANASFEVRFDPDVIAPDEMMA
RIRELEGAAKAQEKRLDTRIIEIPVFYEDPWTHETLMRFRERHQDPSGTDLDYAARINGYDDAAAFIEAH
HSQPWFVSMVGFVSGLPFLYQLVERQKQLEVPKYLRPRTDTPKLTVGYGGCFSCIYSVRGAGGYQMFGIT
PMPIFDPEQKISYLKDFMVFFRPGDIVKWKPIDRAEYDAITAQVEAGSYVPKIAEVAFDLDAFNKDMTGF
NAKLMEALNDA
>gi|99078235|ref|YP_611493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria sp. TM1040]
MTIQRLFIANRGEIAVRIIRAAQALGIHTIQAHSEADADMLAVKLADEAVLIGPAPAKDSYLNIAAILNA
AKDTGADAIHPGYGFLSESPTFVRAVEDAGLIFVGPSADTIERMGDKVAARQAAEAAGVPVVPGSKGRVD
TVAEAVAIAEEIGFPVMIKAAAGGGGRGIRVATTAQELKSLAPQAKAEAEAAFGDGGLYVERAILSPRHI
EVQILGDGENAVHCFERECSLQRRRQKVWEEAGADCLDEQTRAALCASAVALAKAVNYRGAGTLEYLYDA
ASNEFFFIEMNTRIQVEHPVTEMITGVDLVAEMIKVCAGAKLSMTQDQITRTGHAIEVRLCAEDPFMDFM
PWPGQVKSLKIPTGEGVRFDHFLSEGYQIPPFYDSLLGKVIVHAETREAAIDKLVVALTELDIDGTKTTA
PLHLALAADPDVRAGAFHTQWLEPWLEAGNLTAKGDAA
>gi|99078236|ref|YP_611494.1| hypothetical protein TM1040_3258 [Ruegeria sp. TM1040]
MSDIQSPLPGTFYHQASPEEPPFKVKGDAVAVGDVIGLVEVMKTFIQVNAEEAGTFVQYRVGNATPVTAG
DVVAELE
>gi|99078237|ref|YP_611495.1| hypothetical protein TM1040_3259 [Ruegeria sp. TM1040]
MRKIVDLNCDMGEGFGHWVLGEAPDDQLMELISSANIAAGFHAGDPNSMDRVIKLANHYGVGLGAHPGYR
DLQGFGRRYIDTTPEELVNDIIYQVGAVREFGRRHGIRLQHVKPHGALYMEAARNEDLSRLMIESLAAIS
GDLIVYCMDISKTCAIAQRLGHPVVREFYADRDYGKDGSIVFTRKVGRLSPEAIAQKCLRACLEGKVTTV
EGHDIDIAFESICFHSDTPGAVEIGRAIRRVLTENNITIAPSSAVLQAA
>gi|99078238|ref|YP_611496.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MNLRQLKYFLATAELGQVSRAASELSISQSSVTTAIRELEQSMGTTLFNRTAHGMDLTPTGRDLMSAARD
VMEKVQIAQDIGQNHSDVTGTINIAATYTVCGYFLPYHLDRLSHRFPNLTINISELNRESIEEGLISNRF
DVAVILTSNTSNPELATQTLMRSHRRLWVPQNHPLAGREFASFEDVAAQDYIMLTVDEAANTSMKYWGPT
GLMPRVRMRTSSTEAVRSMVANGLGVTILSDMVYRPWSLEGRRISTVVMDREIPSMDVGLAWRRNQEMPN
AARHFVDYFRNAYLSPQMAHTAWRG
>gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
MNISNAQGADEDLGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLSD
FFAFEPETEKASFYAAEDLTEIGKGKVSLKQVGANLFGRQMMILYETYEIGADTGRVMYGHEGEEGGIVL
SGRIEITVGAQRKILGPGDAYYFDSRAPHRFRQVGPEKCVLVSACTPPTF
>gi|99078240|ref|YP_611498.1| 4-aminobutyrate aminotransferase [Ruegeria sp. TM1040]
MLNAEISIRRNAAISRGVGMQTQVYVSRAEGAEVWDVEGHRYIDFAAGIAVVNTGHCHPKVMEAVRSQSA
AFTHTCHQVLPYESYIRLAERLNDKVPGNFDKKTAFVTTGAEAVENAIKIARAATGRSAILAFGGGFHGR
TFMGMSLTGKVAPYKKGFGAMMPDVYHVPFPVDLHGISTADALGAIDRLFKADLDPDRLAAIILEPVQGE
GGFYPAPKELMHALRELCDAHGILLIADEIQTGFARTGHLFAMEGYDVAPDLTTMAKGLAGGLPLAAVTG
RAEVMDAAAPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCTRANALGARLKQRLSAIQERVPEIADIRGP
GFMVAAEFNTTDGSAPNPEMANAIRTEALERGLVLLTCGVYGNVIRFLAPITIPDAVFSEALEILEASIL
AAKDA
>gi|99078241|ref|YP_611499.1| succinate semialdehyde dehydrogenase [Ruegeria sp. TM1040]
MSTPTSLSLRDPSLLETRAYVNGQWINGATTFDVIDPATGRLVAEVADLDVAAAAKAVDAAHAAGPSWAA
LAGKERSSILRRWHDLLVENADDLATILTAEMGKPWAEARGEILYGASFIEWFAEEAKRIYGDVIPGPQR
DKRIMVLKQPIGVVGSITPWNFPNAMIARKVGPALAAGCTFVARPAELTPLSALAMAVLAERAGIPAGVF
NVIPSNDAPGVGRELCTNPKVRKITFTGSTRVGRILMEQASGTIKKMSLELGGNAPFIVFDDADLDAAVE
GAMIAKFRNNGQTCVCANRIYVQASVYDAFAEKLAGEVKSLQVGNGFDDATTAGPLINEAALRKVEAHIS
DAVGKGARIVTGGHRSDLGGTFFEPTVLRDVNPHMVVCHEETFGPLAALVRFDSEEEVIALANDSEFGLA
AYFYARDLSRVWRVAESLESGMVGANTGLISTEVAPFGGIKQSGLGREGSKYGIDDFVELKNICLGGMS
>gi|99078242|ref|YP_611500.1| ROK domain-containing protein [Ruegeria sp. TM1040]
MADPLNLSRRMTLSNIVQAITTYGPVSRASVAKMTGYSKQTVSEVVSSLEDDGWVQTVGRTEGNVGRRAV
VYEIVPNAALVASVDLGGTKVRVALCNLSGAVVEELAEPTCQDGGEAVVDQIARIVGLAARAHGIAQEKV
RVVVVGVPGAPDAETGSIQMAPNIAGIDEIDFPTLLNQRLGIEVLVENDVNLAALGEHWMTHQGETDDLV
YLSIGTGIGAGVVIGGQLVRGARGAAGEVGFIPFGADPTEPESRQIGALERMAATSAIVNGYLAETGAQK
TVPEIFEAHLAGEAAASRVLQTTAAYIARAIGTIAAVIDPKCIVIGGSIGARPELIQMIEREIARSFPRD
IPIETSVLGNHAALAGGASVALSRLHIALFSSGLPNANIVIPPPEISAFREGVA
>gi|99078243|ref|YP_611501.1| acetylornithine deacetylase [Ruegeria sp. TM1040]
MSCDLSKRLLDLQDRDADIALLQQALGCESVTGNEANFAPFLMSQMGELGLAPKRADFLPGRPNVWGRKP
GSGDGPTLMFAGHTDTVHVRGWSEKWAGTVKEDPFAAPLINGEIWGRGACDLKGGICASLAAMRLLERAG
VTLRGDVTYAFIGDEESGESGTGVSAGAADLVTRIQSGEITTPDFAVYVEPTCLDVYTAQIGFFIADVKI
TGTSAYFGTPEKGVDALRATHALLAAIWRHQEELALGPKHDLVGTSNILVTEIKGGGYIAVPGECELSLI
RKLRPGEDLDAAVAAFEAVIDAVAVEEGIKIRISYPAGRDHPYGGSPVEIAPDHGDALSLGRCIQDTHKA
RGKIAGAPYWSETPFLVNQIGCPAVYCAPGDISVAHTFEERINVEEYLAAIRAYALFMTRYCGTNE
>gi|99078244|ref|YP_611502.1| periplasmic binding protein/LacI transcriptional regulator [Ruegeria sp. TM1040]
MKHYLSTVALGAALALATSSAFAQTVGPKGEAATPTASIMVEDGDLETIRSGNHTAALLWHDQSDFVNAV
TAGATDELARAGIEVVATASAGFDAAKQRSDIETALSKDPSIILSLPLDPVTSAAAFEEAKENGVKLVFL
SNVPSDYEHAKDYAAIVTDDLFQMGKQAADALAASMGGAGTVGWIYHDADYYVTNQRDNAFKTTIENDYP
EISIVAEQGISDPARAEDIANAMLLRNPDIGGIYVTWAGPAEGVLAALRANGNDTTKVVTLDLSEPVALD
MVRGGNVAAIVADEAYELGRAMAAAAILDLLGKDVPPFVVAPAVTVTAENVAEGWMRSLHIDAPKSVTGN
>gi|99078245|ref|YP_611503.1| inner-membrane translocator [Ruegeria sp. TM1040]
MTAIKQRFSGFDFQQTVVYFGFVAIFLFFAITLHDDGFLTQRNLTNIVLQTAPATIMAIGLVFALSAGEI
DLSFGSIVAVSALTVAVVLREHPMIVGVAAGLGVGILIGALNGALVAYLKLPSFLVTLATMGLFAGIARS
MTDLRSVPVMNDSFTGLFGSGKLFSVPSLLIWTVIAVGLGHIVYRHTRFGAHVLATGDNPRAAQVTGIKV
PRVRLYVMMICGGTAGLAGLLYAGRLQAAKYTLGESDLMTVIAAVIVGGTALKGGKGSVIGALLGSLLMG
MLNNGLILMNLKVSDQMIVRGLIILLAVAISLRDTSR
>gi|99078246|ref|YP_611504.1| hypothetical protein TM1040_3268 [Ruegeria sp. TM1040]
MFLDVLIRRNPSFIEAAQALHQQGLIPPNSYVLDLDKVESNARYFASEAGKLGLKTFAMTKQVGRHSGFC
QAVMRGGIEKSVAVDLDCAVSCDRAGMKTGHLGHLVQVPRVHVDLAARDLRPDYWTVFSNDKAREAAAAA
HRAGREQNLLARIQTSGDVFYRGHEGGFAAEDICAVADMLEALEGGAFAGITTFPALLFDQDTRKVKPTP
NLQTLAKAREALAAAGRDRIEVNAPGTNSAVVLSALAEAGATQCEPGNALHGTTPLHAVEDLPEDPAVLY
LTEVSHNHGGNAFCFGGGLYIDPVFPKYDVKALVSSEPTTAASALASVEIPDYSAIDYYGMIDATGRVKP
KTGDTVVFGFRGQAFVTRANIVGLSGVSRGTPKVTTIENIFGQAAGWPEKAIS
>gi|99078247|ref|YP_611505.1| ABC transporter related [Ruegeria sp. TM1040]
MSNEPAVLSLKNIHKAFGGVIAIQDFSLDLRAGEIVALVGDNGAGKSTLIKIISGVYTPTSGKIELDGEE
TSFGDASSARSKGIEVVYQDLALADQQPVFMNMFLGRELTKPPFGLLDKARMRQESQDLVDELDVRIPSA
SSTISDLSGGQRQGIAIARATHWASKLVLLDEPTAALGVAETGKVETLIESLKRKNLAILIISHSLDQVF
KLSDRICVLRRGEQIGIRNTAETDKNEIVSMITGVAG
>gi|99078248|ref|YP_611506.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MTDLRGKTALVTGSVQGIGLAIAEALAGAGARIAVHGLADAAQAQAAVDALRAAGAPEARFFDADMRDVA
AIEAMMDDINAWGGLDILVNNAGIQKTARLADLDTETWDAIIGVNLSGAFHTMRLALPKMAEKGYGRVIN
IASVHGIVASVAKVPYCASKFGLVGMSKVAALEYAAAGSKREGGITVNCIGPGWTETAIIKPQVEARAAQ
FDGDRDKGIADLLAEKQPSRRTSDPSEIGALALWLCAPVAHNVTGTVIPVDGGWTAQ
>gi|99078249|ref|YP_611507.1| AMP-dependent synthetase and ligase [Ruegeria sp. TM1040]
MNPAEWLKRTATRYPDRPALYAGETLRATYAAFDNSAAAIGAALEARGVGPGARVAIFMSNRTEYLETLY
GVWYAGAAAVPINAKLHPKEVMWIVADTDAALVISDDALGVGLAPLLEGRQMLSVDSADFATMRKGARMP
APVGLVPSDVAWLFYTSGTTGKPKGVALTCGNLATMTFTYFADVDDVRAEDAILYAAPMSHGAGIYNFMH
ILRGARHLVPESGGFDPAEILTLGKSMGPISMFAAPTMVRRLVDVAKAKGETGAGLRTIVYAGGPMYEAD
ILDAVDVMGARFIQIYGQGECPMGITVLPRSTVADRAHPRWRERLNSVGTAQSAVQVRIVDQDGAELPRG
EIGEIVVQGATVMPGYWQKPEATAKAIREGWLWTGDMGRMDADGYVTLQDRSKDMIISGGSNIYPREVEE
VLLSHPDVHEVAVVGAADPEWGEVVVAFVVACAGRAVTSGALDALCLDRIARFKRPKAYRFVEGLPKNNY
GKVLKTELREELKKDIAT
>gi|99078250|ref|YP_611508.1| acetyl-CoA acetyltransferase [Ruegeria sp. TM1040]
MDARIVGWGHTKFGVHSGTSLEALIQQAAAEAIATAGVAAEDVDAIWVGHFNNGMVPDAFASSLALGLDD
ALRFTPATRVENACASGSAAVYAARSAIRAGEARCVLVLGVEKMTELDTKGVTAALAGASYAAEEAGVSF
PQIFGRIADRYFDAFGDQSETLAQIAVKNHQNALNNPLAHMQRDVSFDFCNTVSDKNPMIAAPLRLTDCS
LITDGAAALVMVTDDMARDFDHSVGFRAAVQMNDFLPMSRRDMTELTAARRTFDAAYTQAGITVDDLDLA
EVHDCFTIAELMIYEAMGLAERGRGADLVASGATLRGGRLPVNLSGGLKAKGHPVGATGVSMHVLAAQQV
LGRAGDLQVDGAELACVFNMGGSGVANYCSILEAKT
>gi|99078251|ref|YP_611509.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
MEPLSTLAFESAPVGLIYAEDRVIKLCNTRFSEMFGYRKAELEGHSLSKLYPSSDEFQRIGQIGVEKMRG
LGRYADERIMRRKDESLFWCRVRGQSLAPQDPFAQSVWSFADISEKRPVTEMTRRERQVAKMLAEGLTSK
EIARGLEISPRTVEVHRARLMDKFGARNGLELVAHLAGLPLGGTS
>gi|99078252|ref|YP_611510.1| hypothetical protein TM1040_3274 [Ruegeria sp. TM1040]
MSQNAARMAFRDIQLTTNAINANTATSGAQGLCPFGRLQDLQDRSSLREPLQIPFAAYTKISLSSVRSKT
ALRSRSFSF
>gi|99078253|ref|YP_611511.1| transposase orfB [Ruegeria sp. TM1040]
MSVGRLEEERLVAGMIELTRQYGRYGYRRTAALLRDAGWQVNDKRVERLWRREGLKVPMNDQRRGGSG
>gi|99078254|ref|YP_611512.1| transposase orfB [Ruegeria sp. TM1040]
MAIRVDRKLDSGNVIDALSDLFIPRGVPSIIRSDNGPLATGLEPMAPLMARFVAQAVQDWIKAVVAKTAY
IEPGSP
>gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MNCLANLDVNLASGAAASLWVVCSIVLIRIARNIPFSGQLSFVLTLAAMLWWLFTVIFDLASQSEACKVA
WSLAAWPGIVLVPVAWSFFVFDYTMNSCRTRRPFRLLIYIGLPSLVSAIAVTNHWTHLLYGPDTRLVIEG
GDSFVIFDHGPLFFAVAATLYVFLMIALGLLGFAFLKAKKIFRPFMGALIIITAAPVVANLAYIGWGVTV
FGFDPTPFTFAVSLIALSWLLVNNSMMDTAAQGRTLMFYATQDPVILVDAGGQFVSANPAARQLIGDRIP
DYGEPIEQLPEVGPLVKDLVKAGGLGKPGPIRLAGRAFDPRAVPIDSPIQAQIPLLGWCISLVDITERER
AAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKLDEEQQEFLQVIEDSGQVLLTT
IGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFSARAKEKGIGLHLEMHDDLPRVILGDDHRFRQVVH
NLVSNAIKFTETGAVTISAAPAENGSILLVRVSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLS
ISRQLCHLMGGSLQVADDEPQGATFEIRLPLLPANEAQELLSQPASGAVSVPHGPALDVLVVDDNRTNRL
ILEKFLSSTPYRVKSVSNGQEAIGLVHSFSFDVILMDIQMPRMDGVETTQKIRSIEQAKGREPSFIVAVT
GNAMPEQLSHYLSVGMDDVLAKPVSKTLLLSLIREIRREVA
>gi|99078256|ref|YP_611514.1| hypothetical protein TM1040_3278 [Ruegeria sp. TM1040]
MIRRLLHLFICLLVVVFLLGPRTPASAETPVGFNIDHRVIVAIDAPAAGVQHLLPKGWVSMPFPAGPVTG
ANILFVFADSKLQLDGEGQPLSPATRHAIVLVGMARKVEGDEVRLFVLRIYSTTPEVDPYGVSVAAEMSR
QTQLIGAENGARTSIYTWKMHVAEAQSLDFRLGYTVGTPMWGPDEVFPHSATTPEFSRIYRIEQMVDLVK
SVPLEMDRVSEMTLTSSVPALAGILDGSEEIVAVMDVPVYLRHIWLP
>gi|99078257|ref|YP_611515.1| hypothetical protein TM1040_3279 [Ruegeria sp. TM1040]
MQKKWNSHMKHILLAVLASIFLVFAPGKIMADSAEIEITAGYRERIALPPDAILEVELLDVSRADAPSIR
LSSQRFKMDRVPLSVTLHYDADIIDARMSYTISARILSGDTVLFRTTSAYPVLTRDFPAQAELVLHKMPR
TP
>gi|99078258|ref|YP_611516.1| hypothetical protein TM1040_3280 [Ruegeria sp. TM1040]
MSKLRRIISRLQPMGRATLAGCAWMSLAVLIWASWLVLTSSGRTTALSVVDLAAFRAVIPAVLLAPLLWR
SRDQIVQLGVKRGLILSAYGAPFTLLVGHGLGYAPVTHAGAMVPGLMPVFAAVLAYVFLGQRLRKRTALA
LMLVLAGATTILIGAGRPLPAQGMGTGHLLFLLGALCWACFTVTLRAYEIPAVLATAIVGAVSAVWLLPL
WIALDLSNIGAAHWVDIAFQAVFQGTISGLISMYAFSRALRLIGGRASVLSALTPGVATLLAIPVLGQVP
QPSDLLALVLVVAGLVIWNLGPKTT
>gi|99078259|ref|YP_611517.1| 4-oxalocrotonate tautomerase [Ruegeria sp. TM1040]
MPYVNIKVTQEGGPNGTGPSTEEKQKLVAGVTDLLASVLGKNPATTFVVIDEVPLENWGLEGRQVSTIRA
EQG
>gi|99078260|ref|YP_611518.1| hypothetical protein TM1040_3282 [Ruegeria sp. TM1040]
MSNSPDAEVQDLMTRYFEGLYHSDSDVLRTVFHPDLAYVNATEGTYEHMGLEAYMARIDARTPPASRGDA
REEVIERITFKGARIGIIEARMTMMGRNYQDLLTIIHSDQGWRVLTKVFSFVERRD
>gi|99078261|ref|YP_611519.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MTLDQLIALDAIVASGTFRAAADRLNKAQSAVSHQIKKLEDELGFDLFSRDTYRPRLSPEGEVFYREVTR
VLEQVNGLKTVAAGLRSEQEPLVSIVITATMSLDPILTLLGEVGRAFPATHIKLVTEMMGGPLARLMSGE
ADLIIAGLDDVPIDEVETRPVGTITIRPVASPAFPAADPARVKSRREMQSYTQVVVSGTGGKEYDQSRDL
LSGGQRWTVSDFQAKISIIKAGLGWGGIPEHLIRDELKTGALVPLAIEGYPPRHTEIFAIRRRDRPMGKV
MSRIWDDLGRGGIQDG
>gi|99078262|ref|YP_611520.1| NADPH-dependent FMN reductase [Ruegeria sp. TM1040]
MVKIAIVYHSGYGHTAVQAKAVYRGANEVAGAEVSLIPVEDYAQNWEIIDAADAIVFGSPTYFGSASAQF
KSFLDETSGRWLEGRWVNKLAAGFTNSAGMSGDKLATLQQINHFAMQHGMIWVGLGLPPGNNTSTGSPED
LNRLGGFMGAMSQADADVGPEVAPAGSDLRTAEYLGRRVAETALRWQAGAAT
>gi|99078263|ref|YP_611521.1| Outer membrane autotransporter barrel [Ruegeria sp. TM1040]
MIEFLCECVVRDKRCAMTPPVSGYKTGRGPIVKRLSGVFFFIMVSLFVAPQAAQASFTSCPANTSGGDPL
TMNLTVDECTLQSGAAVSALSDDLIQIQIAGGSSTNFFIFDPSANDLRDLIFSVNNGSPQGTLDADGGSL
SGIDCAAGCTVSGTHGGSPFTFTYTASGGGGSLSSPAEIDDLVSSTGNTVADGGTDTIAAAIDSGTPTTI
TYDVSNSGSGTLSLSGLTQGTPTNASFGATSIDAASVASGGTETDAISITFTPSSTTDGASFSVPFSFTT
NDADDGTDETTFNVTISGTINAEAEISDLTSSTTNTVADGGSDAQGTVASGSAQALIYTITNSGTADLSV
ATASSSSASNVTVNSIGAPGSTTVSAGGGTTQFTVQYTPSAAGAFSFDLSFVNSDADEDPFNFTVSGTAT
AAPGFSQAIAPGTILADGTATVTFTIDNSANATAATSLDFSNSLPAGVEVAATPNASTTCTGGTLTAVAG
SGTLSYTGGTVGAGASCTVQADVTAGTDGSYSNTSGDLTSSLGNSGSASASLTVASPEIDLQRPAATSLA
DGDTDAQGNVAVGVQQVLTYTVENTGNATLTLSGTPSSSAASNVSVDSISAPGSSSLAASASTTFTVAYT
PTAAGAFSFELDVSSDDADEGTYDLTVSGTATAAPGFSQAIAPGTILADGTATVTFTIDNSANATAATSL
DFSNSLPAGVEVAATPNAATSCTGGTLTAVAGSGTLSYTGGTVGAGASCTVQADVTAGTDGSYSNTSGDL
TSSLGNSGSASASLTVASPEIDLQRPAATSLADGDTDAQGNVAVGVQQVLTYTVENTGNATLTLSGTPSS
AAASNVSVDSISAPGSSSLAASASTTFTVAYTPTAAGAFSFELDVSSDDADEGTYDLTVSGTATAAPGFS
QAIAPGTILADGTATVTFTIDNSANATAATSLDFSNSLPAGVEVAATPNAATSCTGGTLTAVAGSGTLSY
TGGTVGAGASCTVQADVTAGTDGSYSNTSGDLTSSLGNSGSASASLTVASPEIDLQRPAATSLADGDTDA
QGNVAVGVQQVLTYTVENTGTATLTLSGTPSSAAASNVSVDSISAPGSSSLAASASTTFTVAYTPTAAGA
FSFELDVSSDDADEGTYDLTVSGTADGSAEIGVGSATGGSLEDGDTDTIPGTPSAGSPTVIIYTFTNSGS
GTLNITTPTVAGNISNETNVVVNSLTLASNTVAGGGGTTTLEISYTPQVSGAYRFDLQVANDDADESLFN
ITVAGSASGLPEIEVSSSASGALSDGDTDSIATVATPGVTASVTYTITNSGTDVLTLDAPSVASNIRNQS
NVTVDRLSLASTTVASGGGTTTLRVDYTATAGGAYGFDLSLGSDDADEDPFDIVVSGTAQSVASALAAQS
GSGQVSEVGAQFPAPLVVLVTDSTGTGVAGVDVTFAAPASGASVVFASTGTHTETVTTGSDGTASTSAMT
ANGTPSSYAGGSTLQSYDVTASATGLASVTFALTNDRDSEADIQKTQEVIAAFVSNRANAIVSNQPDLVS
RLRQGALAGQQGRNGFDLRATSGGRSANFSFSLRALLEEARRRNDGARWRETLRHADASAGPGADSAADR
AMASQAYALRFRGTDPAQAAPVVTPVISSGWDFWAEGTYAITESGNFESRSGLFFAGADYRWSDQVLLGV
MGQLDIADEDNVAAGTSASGTGWMVGPYVVVRLDQNLYLDVAATYGRSSNTVNALGLFEDDFDTERFLLQ
GGLTGDFKLNARTTISPFARLTYYYEKQESYTDTLGRVIPSQDFELGRFEFGPKISWEMYLQEGTQFSPY
VSFSGIYDFNKLQGATPTDATLASSQSDLRGRLEAGATFLVPDRGIKVAVEGFYDGIGTSDFESYGASLS
VLIPF
>gi|99078264|ref|YP_611522.1| phage tail Collar [Ruegeria sp. TM1040]
MSEPFLAEIRIVGFNFAPRGWAFCDGQILPINQNQSLYSLLGTTYGGDGRTSFALPDLRGRTPLHRGPGH
SLGQKSGAETVTLGIGEMPAHTHAAHASSQVGNSRTPASHLLAAEISPDAAYHAPTPGTLVGIRAITNAG
GSQAHENMQPYIAVNFCIALQGLFPSRN
>gi|99078265|ref|YP_611523.1| phage tail Collar [Ruegeria sp. TM1040]
MSEPFVGEIRMFAGNFAPRGWAFCDGQLLAVSQNDALFSLFGTIYGGDGRTTFGLPDMRGRLPLHAGAGP
GLSPRRLGARGGAEKVTLTVNQMPSHTHPLQASTELAQDQDPGGRVLAAGSGINHYTPSSPTSPMASNMV
THTGGSRSHTNLMPFLCVNFIVALFGIYPSRH
>gi|99078266|ref|YP_611524.1| phage tail Collar [Ruegeria sp. TM1040]
MSEPFIAEIRIFAGNFAPRSWAFCDGQLLPVSQNTALFSLIGTTYGGDGRTTTALPNLQGRAPMHPGRGP
GLTDRRLGQRGGSENVTLSEAQLPNHTHSGIASLDTSSTGTPSDTTTLGDTGFDNLYQTATGTNLVDLAP
EALPNTGGGAAHQNMQPYLTLNFIIALQGLYPSRS
>gi|99078267|ref|YP_611525.1| hypothetical protein TM1040_3289 [Ruegeria sp. TM1040]
MSVEDATHEDFSGNLLTDPSYFRIFFTALTSEGSLGYNDQTIENGSFSASFTPLTQTTYEPSLLNASVTQ
GGYVSVLAVDASTGHVTYIRERRDETGSRFAAPQDLGKPDNVANLGETLLLNGLNGRPNVFLISADPTGE
IWWKYENPNTVVEETITVVPPGTDTPIEVTVLVEVPPAQPWSDWQQLPGALSSLTATQNADGRILLAGIN
SDGIPYMNLQSSDRPFLPEGWDGWEEISDGLTGFEQLVCGLDMNALVHIFARIGDKIYMKAQQQVSASSF
GAWVLFGTFPSSVHSMALSSACNDGLYLVAQLSTGTNCPLYAKYQTGPTSENWSTWDVIGHVAQDCDLVL
QPNANAMLSLFSCDPNGDAAYLNQQTLDHWAAVWTALGSGYATIATTQDITPNPE
>gi|99078268|ref|YP_611526.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MTLPEAPPTSFEIRPPSGAEAPLARRAATLGARYRWITPKDQAFLVALYRSTREVELDRTPWQETEKQAF
ITMQFMAQHAHYQAHYPDALWLVIEQYNKAVGRLYLERWEREHRIIDIALLPQTRGQGLGSAILGDLLEE
ATRAQKSVSIHVEKANPAQTLYRRLGFITKEDKGVYDLMRWDLPADQVNTASY
>gi|99078269|ref|YP_611527.1| hypothetical protein TM1040_3291 [Ruegeria sp. TM1040]
MSTLRTLTSADFEALLNRTFAVRSEPEDVYLSLIEVKVMGSGEREGGAFSTLWQGPKSPFLEQAIYSLSE
EEFGEQEVFLVPVAEKDAGIQYEAVFT
>gi|99078270|ref|YP_611528.1| hypothetical protein TM1040_3292 [Ruegeria sp. TM1040]
MPDYAKIFTYEVEGLSYTVSLYEEDGKILADITLTEGSMDVNALYYGDDEFSGTSENLSGPLNLNGTSLE
GEKIQWDDAVALSDPGLGAEGDEKETYLHEGDTLTVELGAESLDEVDIFGIRATSTTTEDGSIKAVSDDP
EEPVDPVEPTYEKVFFGWEFSETGEPLSGTWILDQEPDPNPYGVTALPEGTEPTFENYLSYYASDTVWGD
VDLLEGVAFYETDENGTLQEVFRFDAPEAGFQSTEEVLDAYYAALDAYEAESGTDGADLLAALSIDMDPE
AEATAEEFSEADDYEFV
>gi|99078271|ref|YP_611529.1| transcriptional regulator [Ruegeria sp. TM1040]
MPPKSPPIFEFLLFEGFSNMVLASAMEPLRDVRMNSGQEVSGWRVTTLDGAPVRSSSGLQITPDGSFDEG
ETNRTLVLVAGYHVRDQVTPTLLAKLRTATRQAERVLALDTAAWLLAAAGVLEGQAATIHWQELEAFSET
FPKTEVSTARFVRSGAFLTCGGASTALDMMLSLIQELYGSAAAFGASTMFVYDPSRQSELNRGAARLEQR
GSPKVLEAVNLMAERIESPLSTAELAKQVSLSERTLARAFQRELGMTPGKYYKILRLQHARYLSEETHLS
LEQIAHRCGFSSASSLGRSFVGLYGRTLRDTRTQERPWVKSAR
>gi|99078272|ref|YP_611530.1| acetoacetyl-CoA synthetase [Ruegeria sp. TM1040]
MRYAVCKSSRLAQSEPLAGTRSLDPDAPMTTAPPLWQPDLSACRKPLLSDFLTLAAKTSDTTIRSFADLH
AWSATEPQKFWPLAWDFCRLVGEAGPVPLLPHQDPMQVRFFPEARLNIVETFPKNADTREAIVFIGEDGR
RTVWSRADLKREVEMLAAALRDAGIEAGDHVAGIVPNMPQAVAAMLATASLGAIWSSCAPEGGPDVVVDR
LGQIAPKLLFAADGYFYGGKRFETRAAIAEIADRLPSIQQIVVWPYAYDAADLPACMTSYDAFKLQDAPE
LDCRPMAFGDPLYVMFSSGTTGKPKCIEHCGGGTLLRMLVEHKLHCDLKPSDRMFYDTTCNWMMWNWQVA
ALASEAAIVLFDGNPMYPNRERLFDIAEAEDVTHLGVSAKYIDTSLKRQHKPAQSYTLDCLRVVLSTGSP
LSPKGFAHVYTDWKADVQLASICGGTDILGCFIGGCPLLPVHQGEIQAPMLGLDVATLNRQGEPVEGEAG
ELVCRNAHPSMPTRFLNDPGNARYRARYFETFPNVWRQGDFTIRTKQGGYVVLGRSDATLNPGGVRIGTA
EIYRQLDKIDAIADAVVVGQSVDNDVRVILFVVLAEGVALDDGLSARIKTAIRKNASPRHVPAKILFVAD
IPRTKSGKTAELAVRDVVNKHPVRNLSGLANPQALALFTDHPELQA
>gi|99078273|ref|YP_611531.1| hypothetical protein TM1040_3295 [Ruegeria sp. TM1040]
MPLNMNRDVFITAAVTGSGGTQDKSPHVPRSPKEIAASAIEAARAGAAVVHCHVRDPETGAPSRRLELYR
ELTDRIRDSEVDVVLNLTAGMGGDIVFGSTEAPLPVNEAATDMIGATERMAHIAECLPEICTLDCGTMNF
AEADYVMTNTPGMLRAMGQMMTDLGVKPEIEAFDTGHLWFAKQLVKEGILEPNALVQLCMGVPWGAPNDL
NTFMAMVNNVPSDWTWSAFSLGRDQMPFAAASVLAGGNVRVGLEDNLFLDKGVLATNAQLVERAVSVIEG
MGAKIVGPDAVREKLGLTKRAPVAA
>gi|99078274|ref|YP_611532.1| BCCT transporter [Ruegeria sp. TM1040]
MSDNNSKSHLVAKSGFFAGLHPGMGTAAKGMIAFFVIFTVLNVDLASGLYASVRAWIEGWFSWYYISLLI
GVMFFCFWLMGSRFGKLRLGEDDSRPEFGKFSWFAMLFSAGIGVGILFFGVAEPIFYFDNSGAFGYPNNP
HADMAGHMDMDMLRARDAMRVAFFHWGFHGWALYVLVGLCLAYFGFRKRLPLTMRSTLYPILGERIYGPW
GHLVDLLAVFGSVFGIATSLGLGSTQIATGLNVLFGLEVTLTLKIVLIVIVSVIATASTVSGVARGIRFI
SEWNIWLSIALLLGFLVLGPAKWLMAFFITSVGDYLWHFIPMGYWTATEEPNVAWQGGWTIFYWGWWIAW
APLVGMFIARISYGRTIREFMVGVLCVPTIAVFFWLCIFGGTAIWQEMHMAGGPAAEGGAGIIATVRNWE
LPGALYGTIANIGETSWMGDMSWTAWPMSLLANLSMFERGAKDLVVFMDDLESVVGSGRKLTANELRKRI
Q
>gi|99078275|ref|YP_611533.1| multi-sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MSPKRLPIKLKVALVIFIVSGAAFSAFFFLNYRDTVSRIHTHTEQLLERDHKTHARYIQDTLTTMRQDAE
TLIGFPPISGILRTRQSDELTDPLDGSSLQDWLVRLETLFKSVLTNRSGYSQIRLLLPENNWSEIVRVNF
VAGEVSHVDPTDLQQKGDEPYIRLLQAVETDDSLFSNVTRNREKGSVVGPPTLRSIKRLVNDDGAVIGAV
VINAVLSELLSVPEYEGELGRTYYVIQNHVEPAFPLATDDQSFVLSPEETPRVLDFKVVAQQSVGQLIDL
GSDENLYLSSVPISDAHVPFDFFIATDIDAGALFQQARHELWRNFAHALVLTLLASGLGYVFAARLLSPL
EHLIDEIKKSAGLRGDQAGSLSKGGDEVTLIANNFKQLTSDLVRETQRLDMVLTNVAEGIVTLLPDGTIE
DANPASCRILDEDSVHLTGRNLFEMLGFDEEHGKEILCETISARGDQPPQQREISLKKQAGEPIVINLVM
RHTSYAEGSRFVALIRDVTERAAATARSEALIAALRRSNAELDQFAYIASHDLKAPLRVIENAVSWLEED
LRPHLTDDTRESMDLLRNRARRMEALLSDLLKHSRIGRVADSVEKVTGVQLSESILELLDVPENIRIVFS
DDFYHLTVQKMPLETVLVNLIGNSIKHHDRGSGYVSIDVKHSDGFMRFRVEDDGPGIEPAYHDRIFDIFR
TLRSRDQLESSGMGLAIVKKHIEVVGGKIDVLSDGERGTVFEFSWPDEIVQEEDKAA
>gi|99078276|ref|YP_611534.1| response regulator receiver sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MDEKKMLIVDDDAGDRKMMRRHLSKLYPTNSILEAESGETARSFVDEEVEVIFLDYQLPDISGIDLMSSF
FRRWPHCVIFIMTGQGDEEIAKSAILSGAADYISKSAITPGALQRMIANGLQVARMKWRIEEHQKELQQF
SDVLVHDLRAPIRAIKFLSDQILEDFAAGDMDEVTREFDLMKKSVSKMSDLIERLASHINPHSEGAPEMI
AAESLVESACLAISQDIANSDAIISTEHNDISVSCFPPDISQLLQNLISNSIKYRSKEQPQIDISVKQLS
SGVQFAIQDNGIGVPEEYRKRIFEPFKRLQRSSDLPGSGLGLATCAKIAKRHDGEIWCDPNVSSGTLIRF
SLKLPPPMTLPDQEDDEEETVVPAAFRDTQARARH
>gi|99078277|ref|YP_611535.1| endoribonuclease L-PSP [Ruegeria sp. TM1040]
MLRDAGSSREQMLQAIVWLADMADFAEMNEVWDAWVPEGHAPARACGEAKLARAELKVEIIVTAAYPVD
>gi|99078278|ref|YP_611536.1| hypothetical protein TM1040_3302 [Ruegeria sp. TM1040]
MVKRLPPVPALDAGGALGADHGRPERKRRGPARTANDRQHRGSRPSSGSGRKRGIPRQGFGRSRGGFSTK
IHLLVNAAGLPMRTEITAGQTSDYLGFIDITSIRLWVRHLST
>gi|99078279|ref|YP_611537.1| ABC transporter related [Ruegeria sp. TM1040]
MANLKLTGVEKTYAGAVNVLRDINLDIKQGELIVFVGPSGCGKSTLLRMIAGLERITGGTLEIDGAVMND
IPPAQRGIAMVFQSYALYPHMTVRDNMGFALKIAGKSASEIEEAITRAAKILQLEDYLDRLPKALSGGQR
QRVAIGRAIVRDPKVYLFDEPLSNLDAALRVATRIEIAQLKEAMPDSTMIYVTHDQVEAMTLASRIVVLA
NKGIAQVGTPLELYERPENEFVAQFIGSPAMNLLPGEVIATGDLTRIRLENGEEVASTVPTRTSDMGLKV
NVGVRPEDLFEEGEGGAMIDATVDIVEALGEVTVLYFKAQAGQDAPVAKLSGIHKGLRGSQVRLYADPKK
VHLFHNGHSLLYREG
>gi|99078280|ref|YP_611538.1| alpha amylase, catalytic region [Ruegeria sp. TM1040]
MNAQTTINPASVLSNDPDWWRGAVIYQIYPRSYQDSNGDGIGDLQGITSRLDHIASLGVDAIWISPFFTS
PMKDYGYDVSDYCDVDPMFGNLADFDALVARAHDLGLRVMIDLVLSHSSDQHPWFAESRQSRDNPKADWY
VWADPQEDGTPPNNWLSIFGGSAWHWDARREQYYLHNFLVSQPDLNFHCPDVQNALLDVTRFWLERGVDG
FRLDTINFYIHDKELRSNPALPKDQRNANIAPSVNPYNHQEHLYSKNQPENLDFLARFRALLDEYPAKTA
VGEVGDAQRGLELLGQYTAGNTGVHMCYAFEFLAKDPLTAARVAEVFERTDEVAADGWACWAFSNHDVQR
HVSRWGLSDAALRLHATLIMCLRGSVCIYQGEELGLPEADISFEDLQDPYGIEFWPEFKGRDGCRTPMVW
RSDNTHGGFSEARPWLPVSLEHAALSVAEQEANPDALLHHYRRVIALRRAHAALSHGTHDKVVASGSVVH
FLRSAESEDIFCAFNLGEAAAEVSLPAGTWEQLGADIGTAEINGDLVKLGPWQACLVRRV
>gi|99078281|ref|YP_611539.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MNAIAGQKPGLMWALRISVIVLVGLWLFPTLGLLVSSFRTGDQIATSGWWKALFPTEQNQTLRTAAPETQ
VQVGDLWVIEGNLFEGETSAEISVWGTNAREIDAYSAGETATLRGGEELTVEADGSYRMTSSTEMEGRRG
ARVFVTAVVPPEFTVENYETILISGGSTDNMARAFFNTLTVTIPATIIPILVAAFAAYALAWMEFPGRAL
LIAAIVGLLVVPLQLALIPLLKFHNEIGIGKGYLGVWMAHTGFGLPLAIYLLRNYMVGIPRDIIENARVD
GATDFQIFTRIILPLSFPALASFAIFQFLWTWNDLLVAMVFLIDATGETTVMTKQIVELLGTRGGNWEIL
ATSAFVSIAVPLAVFFAMQKYLVRGLLAGSVK
>gi|99078282|ref|YP_611540.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MHPAIQGLLTIAFGVGGCVGYFYLSNIILDTFVFPARGKDIAKNIRRANMVRPWLFLLPALLALGLYLAY
PVFETIRLSLTERVPGGGSEFVGLDNYKQMLAEAKFWEALQNNFLWLLVVPAASTAFGLLAAQLTDRLAW
GNIAKSLIFMPMAISFVGAAVIWKLVYDARPPGTEQIGILNAIYIWLGGVEPQQWLTIPFWNNFFLMMVL
VWIQTGFAMVILSAALRGIPEETVEAAIVDGAGPFQIFFKIKVPQIMGTIVVVWTTITIVVLKVFDIVFA
LTNGQWETQVLANYMYDKLFRANDWGVGSASAMVIMLLVMPILVWNVYNARREMR
>gi|99078283|ref|YP_611541.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKRVLMSAAAITALMAGTASAQDLIFPVGEGAFNWDSYAELEKIDLNGEQVTVFGPWLGPDQEVVENVLA
YFAAATGADVRYAGSDSFEQQIVVDAEAGSAPNVAVFPQPGLVSDMAKRGFITPLGEETADWVRDNYAAG
QSWVDLGTYPGADGNDGLFGLFYKVDVKSLVWYNPENFEDFGYETPQSMEELKALTEQMVADGNTPWCIG
LGSGGATGWPATDWVEDMMLRTQEPAVYDKWVSNELKFDDPAVIGAIEEFGWFAKNDDFVSGGAGAVAST
DFRDSPKGLFASPPQCMMHRQASFIPAFFPEGTEMGLDADFFYFPAYEGKELGNPVLGAGTIWSITNDSP
GAQALMEFLKAPIAHEVWMAQQGFLTPLKSVNTDLYATDTLKKMGEILLSADTFRFDASDLMPGGVGAGS
FWTGMVDYAGGKPAEEVATEIQSSWDALK
>gi|99078284|ref|YP_611542.1| LacI family transcription regulator [Ruegeria sp. TM1040]
MNLKELSAVLGLSQTTVSRALNGYPEVSEATRKRVMQAAQDHNYRPNTRAKALATGRAMAIGHVIPLSTQ
HEMMNPIFSDFIAGAGESYSQAGYDMVLSLVADEDQSRAYHEMAAKRNVDGIVLHAPKMRDSRITMLQEI
GLPFAVHGRATDISRPYSWLDVNNTSAFRRATDFLLDLGHRRICLVNGQESMDFAHRRRQGYEAALQARG
IPVDPALMTAGEMTEVYGYDTVQRTQALEDPPTAYLVSSIIAAFGVRRAIEESGLKMGRDISVITHDDDL
SYLRNGADVPVFTATRSSVRDAGRRLAKLLISQIEDPGDAPLTELLEAELTVGRSTGPAPNRTSKT
>gi|99078285|ref|YP_611543.1| Beta-glucosidase [Ruegeria sp. TM1040]
MTDFTFTRRDFPGDFLFGCATSSYQIEGHQYGGAGPTHWDSFAATPGNVVRSEDGARACDHYHRFEEDLD
LAAAAGFECYRFSTSWARVLPEGRGTPNAEGLDFYDRLTDAMLERGLKPCATLYHWELPQPLADMGGWRN
RDVSNWFAEFTEVIMSRIGDRMYSVAPINEPWCVGWLSHFLGHHAPGLRDIRATARAMHHVLLSHGRAIE
VMRGLGMNNLGAVFNFEWAEPLDQSAQAQAAAETYDAIYNRFFLGGVFKGAYPEAALRGLEPHLPQGWQD
DFATITQKVDWCGLNYYTRKVIGPDNGPWPHYAELVGELPTTQMGWEIYPDGLYKFLKRTAEDYTGGLPL
IVTENGMANPDVLLEGEVPDAARIAYVEAHLARVRQAIAEGVPVKGYFLWSLLDNYEWALGYEKRFGLVH
VDFETLKRTPKASYRALQRALTAS
>gi|99078286|ref|YP_611544.1| riboflavin synthase subunit beta [Ruegeria sp. TM1040]
MLKGSRAMTKSPKFAFIKAQWHADIVDQALIGFQDQLADFGLDAAVDVFDVPGAFEMPLLAQKLAATGEY
DAIAAAALVVDGGIYRHDFVAQAVVSGLMEAGLKTGVPVLSVSLTPHHFQPSEEHQTFYHAHFVKKGREA
AQAAVRMANLYRDLTPTPVEAVA
>gi|99078287|ref|YP_611545.1| LacI family transcription regulator [Ruegeria sp. TM1040]
MTDRTRITIKDVALAAGCGVATASRVLNKSGPASAETRARVEDAARRMGFVFSATGRALQSRKSMTVGCL
IPSLANPVFAEAVQGAQEELRSHGYQLLVASSNYDDETDNDILTTLLSKDVDGLLVTMAAPQESVPLAQA
RARDIPVCLMFHDPLPDWPSAHVSNAQAAAEVARQFALYGHERTGFLALRFSTSDRSRNRFDGFRAQCAA
LNLAPPKLIEITETEANTPSILAQRLSDHPDLTAIFASNDFLAIAVQKAAPLMGRHVPQDLSVVGFDGIE
VGRLLDRSLATIETTPEAMGRQAAQTLLTGLQGGAMTELAPLPFTFRAGATLSGPRAKSPDDDRGAAQSP
SVPPFTSNDKQG
>gi|99078288|ref|YP_611546.1| putative periplasmic solute-binding protein [Ruegeria sp. TM1040]
MKHIALTVLAATALAAPLTASFASSAQAEDAICYNCPPQWADWASMLEAIETEIGVSLPHDNKNSGQTFA
QLVAEKDSPVADVAYYGVTTGIKAGKEGLVEAYKPAGFDEIPEGLKDPEGKWFAVHYGTIGFFVNVDALG
GAPVPQCFADLKKPAYQGMVGYLDPSSAFVGYAGAVAVNLSFGGDLQDFDPAIEYFSELAENAPIVPKQT
SYARVVSGEIPILFDYDFNAYRAKYEEDGNFEFVLPCEGSVRVPYVMSLVGNAPHGETGKKVLDFILSDK
GQAIWTNAYLQPARPVELPAEVAEKFLPASDYARAQAVNYAEMEKAQAGFGERYLNEVK
>gi|99078289|ref|YP_611547.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTARSFGVLCLLPLLIFTLAFLALPLVRLVLSSSEGAEGWSVYVRMLQTPRYLSALLQTLLVSGAVTLAA
LAVSTTAGLFLTRNRFWGRSALLSILTLPLAFPGVVVGFMIILLGGRQGLVNQITPSHVVIAYSTFGLFL
GYLYFSIPRVLLTVMAAAEKIDPALEEAARSLGAPAHRVLWDVLLPALRPAMVAAGAIAFATAMGAFGTA
FTLATDIDVLPMVIYTEFTLSANFAMASALSIALGIVTWGVLLIARSFSGGAIAAGG
>gi|99078290|ref|YP_611548.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MRRLPHLLSLMVTLLACAFLLVPTVQSVLAGLTANYFRGLSSGLTLKWVAEVWTLYADSIFLSIWLAVAC
LVMTLILGVPAAYALARNPGRLSRILEEFISLPLAVPGLALALALLQLYGAQQGFRAHWSFILVGHVLYT
LPFMVRAVQAVLAAIDLKTLEEGAASLGAGPARRFVDIVVPNALPGILAGSLTVVTLSIGEFNLTWMLHT
PLLKTLPVGLADSYASMRLEIASAYTLVFFVMIVPLLMAMQWASARAQRILS
>gi|99078291|ref|YP_611549.1| ABC transporter related [Ruegeria sp. TM1040]
MTLTLCRVAKTYDDGTRALNPTDLEIDPGEIISLLGPSGCGKTTLLRLIAGLEVPDTGAEIRFGDKDVTH
LPVEKRNIGMVFQSYALFPNMSVRDNIGYGLKMQRLPRAEIQRRVDEVITLCRLEPYAHRAITALSGGQR
QRVALARAFAPRPRLMLLDEPLSALDAALRLELRDELAALLRQFGTTVIFVTHDQDEALAIADRVAVMEG
GHIRQIGTPEELYRNPKSAFVAEFVGHAMPLRGEISDRTLRLPGGALPLPLPDNAANGAVYVRAEDLRVD
PKGPLRAQVETVTFLGTHYRLGLTGLTDQRLFALHHGTSAPVVGDTLHLSIPPEALICLPQH
>gi|99078292|ref|YP_611550.1| metallophosphoesterase [Ruegeria sp. TM1040]
MTSFIQLTDTHIVSEGSLAYGRSDTATALARAVDTINSRLPVLDPVDCVVVTGDLTDHGSAEEYAHLRQL
LAPLNVPVRAIPGNHDTREAMRAAFATEDWMPASGPIQWHHDFGPFAMVGLDTLVEGAPYGMVCEAGLGF
LARSLKTTPDKPLVVATHHPWIPSGMADMDRNNLRNGPAMLDLLREHDAPVHVISGHLHRAMSALVDGVL
HQVAPAPCHAVHLDQRADAVNSLVLEPGQVTVYNWHDVTGGLVSDLLPIGDYPGPWPFYD
>gi|99078293|ref|YP_611551.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MAEILFPALFVLLALGLPVAFAMMIAVFLALSLGSSYPHLVVVKEMFSGLDSFPLLAVPFFILAAEIMTG
GAVTMALLRLAQSFVGHLRGGLGHANVVSSAMFAGISGSALADAAGPGSMMIRMMEKGGYDRSYAGALTI
ASAVVGPIIPPSITMIIYAMQDQNVSVGSLFMAGVLPGVLITCMVLVANAYVSRKRGYMSGDVMPTLLEI
GRIFVYALPALSLIVLIVGGIRFGAFTPTEASVIAVFYALIVGMFVYRSLRIRDLPNISLKAAMTSGAVL
LILGAARAFAWVLIIEGIPQQLAETIISWELSPVAFLLAVNLLLLAFGLFMDPLPGVMILVPILAPISFA
LGIDPNHFAIIVIVNLTMGLTTPPVGSLIFVVSSTVHLKPSALIRELPPFFLALAAALLLITFVPNLSTW
LPEVSGF
>gi|99078294|ref|YP_611552.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MKKLEHYFVALNGGLLMVLMAAMTSVVGANIALRYFTGHSLPWADEAARYLMIWMTFSGAGLVLRAGGHV
AITNLQDALPSLGQRLLRGAIVLGLLLFFGFMVHVGLQYTQRMQYQVTPALRLPFLYIYAAMPVGFLLLM
VHLLLVAHPFITAGRFKPTGKPSDAPTALPGGANG
>gi|99078295|ref|YP_611553.1| TRAP dicarboxylate transporter, DctP subunit [Ruegeria sp. TM1040]
MTVFSRSLLAAGASFAFAVPLAAQTEIKIGYALAEDSHYGVAAKTFEEVVLEQTGEDFSFTHFPSSGLGG
ERDVIEGLQLGTVEVTIVSSGTLANFVPETGVFDIPFLFRDLGHARSVLDGPIGQDILEKFDAVGLHALA
WGEQGFRHITNNRNAINTPADVQGLKLRTMENPVHLAAFNAMGAAPTPMAWPEVISSMQQGVIDGQENPL
SVIVSVKLDEVQKYLTLSGHVYSPAMLLVSKPFWEGLNDEQKAAFEAAAAEAVGAMRGYVDGIEASGVET
LKERGMEVNALSADEKAAFQASIQSAYEGYYKTYGEDLVKSIVAAE
>gi|99078296|ref|YP_611554.1| 6-phosphogluconate dehydrogenase, NAD-binding [Ruegeria sp. TM1040]
MHVGIIGVGLMGHGIARNVLSRGGFALSFLDHPGNQPVDEIVSLGAVACATPAEVAAMSDVVILCVTGSP
QVEAIVAGDQGVATALRQNAVIVDCSTALPESTLRMAEIVRAAGGDYLDAPMTRTARHAHEGTLNLLVGG
ATDTLERVRPVLSTFTEDVAHVGPLSHGHRLKLLHNYVSVGFMTLLAEAAAQSADAGVDPAVFVDVLASG
GGASVALERLAPFITEGDREGLPFFVSNAQKDIDYYRAMSEQAGAKQTVADGVSQALADAVADGHGQAYV
PELCALFKNSSS
>gi|99078297|ref|YP_611555.1| aldehyde dehydrogenase (acceptor) [Ruegeria sp. TM1040]
MTDWKAAASALYDGGFRPMFINGKWCESQSGEVIEARNPASGALLATVPKGGAADVDAAVAAARAAFEGP
WSKWTPFERQALLLRIADRFEAEWETLCLSDTLDMGMPIQRTLANSRRVLGMLRFYAGQAVTIHGHTIPN
SFPGEIHSSTVREPVGVVGAIIPWNAPIAGSIWKIAPAIATGCTVVLKPSEEASLTVLMIARIMQEAGLP
DGVLNIVTGYGAAAGAALAAHSGVDKIVFTGSTATGQAIARAATGNLKRVSLELGGKSPVIVCRDADIEK
AVPVAAMAVFANSGQICIAGSRLFVAREIHDEFVRRVAEFAANLRIGHGIEESTDVGPIISARQAERIAG
YLAAGPSEGAEILTGGARVKGAGFEGGHFIEPTVFGGVTDEMSIAREEIFGPVISALPFDSLDEVVERAN
ATPYGLAAGVFSTHLGTAHKLAHRLKAGSVWVNMYHAIDPAVPFGGVKMSGYGREGGTEHMEEYLDTKAI
WINTD
>gi|99078298|ref|YP_611556.1| hypothetical protein TM1040_3322 [Ruegeria sp. TM1040]
MASKILILSTRENGSGRISLTHKAEGASGISRISADLSRDDLLQLVLFCEGCDLRRIYGSPAPAELTLDG
LSVAYDPRQDELLLSRQVGFSEKSARVGYAAFLAEMAGVVETVIDQAETSKHGLTLKTLLKDTELPDAAV
THLTTDQIAEVRHRLHEMALLMLYDRAMEKGSRFAKLLRTKKFRPEAQACADDLVAALAQSLLARGD
>gi|99078299|ref|YP_611557.1| malate/L-lactate dehydrogenase [Ruegeria sp. TM1040]
MTQTEDATTQLTLDEVRALAERVLTHCGYASAHVAAISEMLYRCQLDDCQSHGLFRLFMCANTMKDGKID
AAASPQIHSEDTAIIRADAREGMSLLAVQEAMPTLIEKARRYGMAALAVNNCFHFSALWPEVEALSTAGL
AGLSMVPSHSWVAPAGGTKGTLGTNPIAFSWPRKGQDPFTFDFATSGFARGEIELYKRAGKPLPEGVAID
ERGQPTCDPDAALNGAMLTFGGHKGSALSIMIELMAGPLIDDLISLESEAAAGRPGCAPYHGQIILAFDP
EKFSGGRVAQNDARAERLFADIIAQGARLPSQRRYAARARNLERGYLEIPSALYRDLEALMESPIGSS
>gi|99078300|ref|YP_611558.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MAGKRAVSRNTLPDVIANDLRERILSGELAEGEIIRQESLADEYDVSRMPIREALKRLDAEGLVQFTNNR
GASVTKHSLPEIAEIFDLRILIEVDLFRRAIPAMTSTDFALCNQLLEEMDASYDANDVGKWGTLNHQYHS
ALYAAADRKLTNDVLQGISLHSDRFVRMHLSVMEQREPAKKEHRDLLRYAEARDVEKACAALRDHITRTK
DALLRLVAENRALAGDQAN
>gi|99078301|ref|YP_611559.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MFHPHGNHLIAGQWVTGSDHFASSPAHGESYAFSVGRVSDVDAAVEAAEEAFAAYSATSRAERAAFLNAI
ADEIEARADDITAIGTQETGLPEARLQGERGRTTGQLRLFADHILAGDYLDRRHDEALPDRAPLPRPDLR
MVQRPIGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVVKGHSAHPGTGEIIAEAVLAAILRCKMPSGV
FSLIQGGNRQVGAALVQHPLIKAVGFTGSLRGGRALFDLCAQRPEPIPFFGELGSVNPMFIFDAALNARG
EALAEGWAGSLTMGAGQFCTNPGIAVLRAGADADRFVDAAAAALAQTAAQTMLTDGIAHAYRDGQRRMAG
VEGVREVLATESDARNATPFLYMTDAQNWLQNESLSEEVFGPLGLVVTVADMDEMRAVARSLQGQLTCTL
HLDDGDSDTAATFVPILERKAGRVLANGFPTGVEVADTMVHGGPYPASTNFGATSVGTLSIRRFLRPVCY
QNIPEALLPADLRDAG
>gi|99078302|ref|YP_611560.1| paraquat-inducible protein A [Ruegeria sp. TM1040]
MNLDQIIACPMCDALHLDQEVQKQSVAQCARCGTVLAAPKSGAMTRIAMLSITALILLMAAASFPFLSLR
VQGFSHQASVLDTILAFATGPMLPLSLATGFLILLVPAARYCALIYTLAPMAIGYRPAPHAATVYIWAER
LRPWAMAEIFIIGVAVALVKVSGLARVELGPAFWAFAALLVVTILTDSSICRLTVWKTLKTRSTI
>gi|99078303|ref|YP_611561.1| paraquat-inducible protein A [Ruegeria sp. TM1040]
MTATEAGLSGCRTCGSVAPSGSQVCPHCRSRLELSETASLQRVWAWLTAGLIAYVPANIYPMLRTKTFGQ
TSENTLMGGIIELFHHGSYGVAFIVFFASILIPIAKFLAIGFLAISVRKPVTLDHHRRLVLFEVVEFIGR
WSMIDVFVVAILTALVQLDYAAAISPGIAAVSFALSVAFTMLAAQSFDPRLMWLADNEKTS
>gi|99078304|ref|YP_611562.1| hypothetical protein TM1040_3328 [Ruegeria sp. TM1040]
MNPKEPAQLKISDQRPSMWRNLSLVWLVPLLALIVSLGIAWKSYSERGELIHIAFDNGSGVVANETTLRY
RDVVIGRVEQVGFSEDLSRVSVAVRVDTDIAPFLDEDATFWVVRPEVSSRGISGLSTVLSGVYIEGAWDE
TAGSAQTEFVGRDRPPLVQPGRAGRRITLRTEDGRMITEGAPVLFRGIEVGRLEHPRLTVSGNSIVVDAF
IEAPHDRRINSATRFWDTSGFTVSFGAEGLSLDVDSLASLVSGGIEFDSVFDGGSPANPGAVFDIYPDEA
TARRTAFARSMAGGVAISVAFDDSVAGLSSGAPVELGGIKVGEVGSLTAAIQNETDTADVKLVAKLLLQP
GLLGLAPGANEEDVLDFLETAVEGGMRARLASAGLLSSELMVELVRLDDVPPARFDRTAEPFPEMPSAPS
DLPDFSATAEGAMERISQLPVEELMAQAINTLASIEALAAAESTRQAPAAAVALLEETRALLNDPSTRAL
PGELRATVSDLRAILQELQQGRAVANLTAALQDGARAADEIATASENLPALVDDLRDLAAKANNLEAEEL
IQSVNTLMTSADALIGTEAARALPSSLSAALEEIRTTLATLREGGLVDNANATMVSARDATQSVAQAAEG
LPALSARLERLMTRSESLVAAYGDRSNFNMETLDMLREIKSAARAVSQLARKIERDPNSLVFGR
>gi|99078305|ref|YP_611563.1| hypothetical protein TM1040_3329 [Ruegeria sp. TM1040]
MKKLVLSLCVAGALSACSSANDPRYLIAATPAERVKNLSARTVEVQLVSLPSYASASDIVSEGDGGALYS
QERAQWADDPARGMSVAIARGLSDRTGAAVAVEPWPLNTPADARLDVRIDQSYARADGLFELSGQYAVSS
PDGRVREFVKRFHIETPVTESGPAAAARALSAALAELSRQVAVSM
>gi|99078306|ref|YP_611564.1| ABC transporter related [Ruegeria sp. TM1040]
MTFEASNIHKSFNGTEVLKGVSLAMKKGEFIALLGASGSGKTTLLNIIAGLQQADRGQLHLDGRDITGLA
AGKRRFGMVFQNYALFRHMTVADNIAFGLRVLPRRARPGRAARDAKVSELLEMIGLQDLGDRFPQQLSGG
QRQRVAMARALAINPQLLLMDEPFSALDAQVRRSLRSSVRTLQQKVGVGAIMVTHDQAEAWDLADRVAVM
DQGQIVQFDTPDALRDRPATGAVRELLQGAA
>gi|99078307|ref|YP_611565.1| Sulfate ABC transporter, permease protein CysW [Ruegeria sp. TM1040]
MTRFILIALSFLFVTVVIAVPVAAVFHRAFSEGWGTYIANILDQETLLAIRLTVVTALIVLPLNVMFGVA
AAWLIARYRFFGRRALLILIEAPFAISPIVAGLCFLLVYGAYGPVGGVLAPQGIQLMFNLTGIVLVSLFV
TCPFVVRELIPVLMVSGEDEEKAAITLGANGWHLFRFVVLPNISWALVYGVVLTAARAMGEFGAVSVVAG
SIRGETMTLPLQIELLYNDYNATGAFAAATVLTALALLTLVLRGLLNRFGPEKGHAR
>gi|99078308|ref|YP_611566.1| Sulfate ABC transporter, permease protein CysT [Ruegeria sp. TM1040]
MFGPEGAGRNPYRSITVVSLTRTAPRVLPGFSLSLGVTLLFVTLIILLPLSGLMWQLAQLSPADYIKVMT
SRRVLVALKVTLSAAALATLINAVFGLLLAWVLVRYRFWGRGVLDALVDIPFALPTAVAGIALVALYDKS
GWIGGMLAEFDIKIAYTWWGIVIAMVFTSVPFAVRAIQPAIEELDPDEEAAALTLGASGLQRFVRVILRP
LLPAILTGVALSFVRSLGEFGAVIFIAGNLPFKTEIASLLILIRLDEFDYPAAAAIAGSLLGLSLLLLIV
VNLVQTRLYRYLRTEG
>gi|99078309|ref|YP_611567.1| thiosulphate-binding protein [Ruegeria sp. TM1040]
MPLSSKPFLRSSRVLVRSLGAAAIALAGFASSAEAEEQEILNVSYDIARELYAALNPVFAENWQAETGET
LTIKQSHAGSSKQARAILQGLQADLVTFNQVLDVQILADKGFVAQDWQQKLPNNASPYYSLPAFLVRGGN
PKGIEDWDDLTRDDVELVFPNPKTSGNARYTYLAAYAYALDKFGGDEAAAQEFVGKILSNVVVFDTGGRG
ATTSFVERELGDVLITFEAEVENIRASEDEGAFDRVVPAISLLAEFPVALVDKVADARGSRAVGEAYLDF
LYSKDAQEVIAGFNNRVHHPEVVAATADKFPDVRLITVEEVFGSWAEAQETHFGEGGTLDRVFTN
>gi|99078310|ref|YP_611568.1| hypothetical protein TM1040_3334 [Ruegeria sp. TM1040]
MAQDLILHGVPDRIRLDGWWLETTETPEPDIAPPMRANGSLMASLRMRQVIPLLGALVALADWLFWHQPV
GLSLAIFAVVVSAAILAVKPERPSLRSWGLAMGFALLCNLPVVIELQFLSLLFSLGGLITLAAWAFAGSS
LTTGLILRMALRLPAFGLVHLVKDTADALPPATYSSRLRYMAATLLLPLLMGAVFLGLLANANPVLQAAL
DSIDLRHLLRAEFWTRFLFWGCVASLLWPLLNLSESWIGAQARRARVTKAGPHRSSFLINPLSVRNSLWL
FNLMFGIQTLMDLSILTGGVSLPEGMSYASYAHRGAYPLVATALLAGLFTLLTRNMIGQDKVLRSLVYLW
LAQNMILVATAAIRLQHYVEAYALTYLRVAAFIWMALVLTGLLLTIWQIHRGFGTSWLLRRCLAALAITL
YLSSLTNFADIVARYNLTHGSALRGPDTYYICSLGPGAYRTILDHEASTGQDICTRMIERDLERISIRNW
REWGYRMWRLEAYDRAQN
>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MSARILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEKDGLEVCRDIRK
SSDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKRSTPSITQLPTALTHGALELDA
ERHQCAFAGVPVSLTGSEFRLLKVLMTRPDLVLTRAQLVEALYGFNIHVSDRTIDSHIRNIRAKMSEVGC
TEAVVTVHGVGLRMGACQQT
>gi|99078312|ref|YP_611570.1| periplasmic sensor signal transduction histidine kinase [Ruegeria sp. TM1040]
MIRKWRPRLWTVVLLVLAIVLCLPIAGLILFRFYDNQLVQQTEESVLAQAAVMAATYADLYSEAAGLAPP
KPKPVSAQDAIFPSLSINSATVLPPRPDAANPSTSVTATYQRLAPQLSRIASSAQAQTLAGYRFLDTQGN
VIAGTAEIGRDLGHVSEVRAALDGHVVSVARTRVRDSSPPALYTLSRGARVRVFVAMPVHVNEALIGAVY
VSRTPSHIFRFLYGERFNLLKAAAFVALSTTLIGYVFWRFITRPIRLLKERSQLATQGNHAFEAPDHLGT
REIEDLSLSFKSLTERLQNNRDALKTYTAHVTHELKSPLTALKGAAELLRDDDLSQSQRHRLLDTIEKGG
TRIEDLLAHMRAFSLADQQAMSGRCSLEQIQDQITQAFPALSIMIENGSLGLPSEATTLSILLTHLLQNA
QQHGAKTVKLRTAHTNGSITLRISDDGAGISAGNADKILQPFFTTRRDSGGTGMGLNIVKSTVEALGGHL
YILPQDTGAGFELEWPNATPSLDRTQAPGA
>gi|99078313|ref|YP_611571.1| NADH:flavin oxidoreductase/NADH oxidase [Ruegeria sp. TM1040]
MTTLFDPIKVGALSLPSRIAMAPMTRSRTDQPGNLPNDMMAAYYAQRASAGLIITEATQISRQGQGYSFT
PGIHSDDQVAGWRVVTQAVHEAGGRIVNQLWHVGRMGHGMFHADGLPVAPSAIAPDASVWVVDPKTNRAG
MVECPVPRALKTTEIAEVVADYAAAARNAKVAGFDGVEIHAANGYLIDAFLRSSSNKRQDRYGGSVQNRI
RFAIEVVEAVAAEIGADRVGLRISPFITQRGMDDPSAPETILEMAKALARIGIAYIHIAEADWDDAPETP
RAFRAALREVFSGSILVAGGYDKERAKVILDAGLADVVAFGRAFVANPDLPHRFAQDLPLSAFDSETLFG
GDHQGYTTYGPYAPGA
>gi|99078314|ref|YP_611572.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MLLDNLSLFLRIVEKGGLAAGGRELGLSPATVSERLAALEAHFGARLLNRTTRSISLTVEGRELVHGAQR
LLAETEELESRIRLGTQQIAGPIRVSAPSDLGRNRLAPILDRFLEQNPEVSIDLHLSDGFVDMATMGLDM
AIRYGELADSSLIMRRLADNARIVCAAPSYLEANGTPGDPLDLAHHNCLLMRFGSDVDRAWPFDIDGRRK
RVVVRGNRIANDGDLIRQWALEGRGIMRKSQWDVQQDLAEGRLVPLLRNFEVEPIHLQVVMSAGRPQPRR
VRALLDTIVAEFQPSRSDS
>gi|99078315|ref|YP_611573.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MNIELADLRLFVMIAECGNLTHGAARAFLSPPAASARIKAMEQEIGQQLLVRKNKGVELTPSGDALLRHA
RLVLRQFDFLTDDMTNAQMGHLRIYANTTGVTEFLPAILARFLADHPGVRVDLQERLTQEIIRAVADGTA
DIGIISGTEGRDGLERLRFATDRLMLAVPSGHHLAHHDQVSLEQTLAFEHIALHDGSTLLDFLRRQLRRS
AFDRQLRIQVRSFEAMCRLIEAGVGIGVVPESAALRHLQTMDITLLALADDWAVRDRSILVRRWADLPQS
AQRLIDLLVEKEAGGAEV
>gi|99078316|ref|YP_611574.1| hypothetical protein TM1040_3340 [Ruegeria sp. TM1040]
MDRLADWIGRTETRTEWIAPFPANALAATLDCSGTEYGEDSELPPLWHWMHFLPIYKLSEAGYDGHAALG
GFLPPVPLPRRMWAGSRLQFHAPLRIGHVLTKKSTVQSVIAKKGRSGPLVFITVRHLIFDQDTLGIDEEH
DIVYRQEPSPDAPVQKPLPAPETSDFSREITPDPVLLFRYSALTFNGHRIHYDRPFCTVSEGYSGLVVHG
PLLATLLLDLLRRERPSATVTGFEFRALSPVFDNDPFSVHGAIGEDAKTYSLWVRRADGALAIKAEARVI
>gi|99078317|ref|YP_611575.1| ABC transporter related [Ruegeria sp. TM1040]
MASEHAPIIEMKNIEKHFGSVIALAGVSLEVFPGECHCLLGDNGAGKSTFIKTMSGVHKPTHGEIYFEGK
PMSFGDPRDAISAGIATVHQHLAMIPLMSVSRNFFMGNEPTKKIGPLNFFDHDYANQVTMDEMRKMGINL
RGPDQAVGTLSGGERQTVAIARAVHFGAKVLILDEPTSALGVRQTANVLATIDKVRKQGIAVVFITHNVR
HALAVGDRFTVLNRGQTLGTAQRGQITPEELQDLMAGGQELVALEGSLGGTV
>gi|99078318|ref|YP_611576.1| inner-membrane translocator [Ruegeria sp. TM1040]
MSNASTDTAVDERIKSRSRLREALIRPELGGMVGTVAVFTFFLLFAFDSGMFNSQGMMNWATVSAQFMII
AVGACLLMIAGEFDLSVGSMIGFAGMLIAIFSVTLGWPVWMAIMLTFVLCVAIGALNGFIVIRTGLPSFI
VTLAFLFILRGFAIFLPQVIERKTIIGGIKDAAEGDWLAPIFGGKVLTGLFQWMGEAGLIATFERGTRQG
QPVVDGVPMLIIWAIVLILFGHILLTKTKFGNWIFAAGGDAEAARNSGVPVNKVKILMFMFTAFCATVFA
VCQVMEFGSAGADRGLLKEFEAIIAVVIGGALLTGGYGSVLGAALGALIFGVVQQGLFFAGVESSLFRVF
LGVILLGAVILNTYIRRIITGER
>gi|99078319|ref|YP_611577.1| periplasmic binding protein/LacI transcriptional regulator [Ruegeria sp. TM1040]
MTSLTKKFALAAVVAAAPLMVATTVSAEGEKYILVSHAPDSDSWWNTIKNGIALAGEQMDVEVEYRNPPT
GDLADMARIIEQAAASGPNGIITTLADYDVLSGPIKTAVDSGVDVIIMNTGTPDQARSVGALMYVGQPEY
DAGYAAGLRAKGDGVESFLCVNHYIVQPSSQDRCQGFADGLGVELGTQMIDAGQDPAEIKNRVLAYLSAN
PDTDAVLTLGPTSADPTLLALEENGMAGDIYFGTFDLGGEIVKGIQSGVIQWGIDQQPFLQAYLPVVVMT
NYHRYGVLPGNNINSGPGFVTADGLEKIEQFAGEYR
>gi|99078320|ref|YP_611578.1| LacI family transcription regulator [Ruegeria sp. TM1040]
MAVTLKEVAERAGVSRSAVSRTFTDGASVSDKMRRKVEKAARELGYSPNALASSLTTGRTKLIGLVSNNF
HNPIFLEVFDLFTRGLQDRGLRPLLVNLTDETDPEHSVNMLRQYSVDGVVVASSTLPPGFAKAFRDAGVP
VVHSFGRSSSAPQVHVVGIDNVESGRMAARALIARNYTHVAFMGGPETATSTQDRHAGFMSEMSKHPNIR
ATYSFAEAYSFQAGRSEMMRLLQAGPAEAYFCGDDVLSIGALSAISDSGLSVPKDIGIIGLNDMEMAGWE
SIDLTTVHQPIRQIVSSSIELMVAMLDEPDRYPEARIFPCSIVERGTLRPAPKT
>gi|99078321|ref|YP_611579.1| oxidoreductase-like [Ruegeria sp. TM1040]
MTKLKWGMIGGGEGSQIGPAHRLGALADGRFEFAAGALDHRADVGRAYAQSLGIAADRAYGDWSEMLDGE
RGREDRVDLVTVATPNATHFEITKNFLEAGFNVLCEKPMTMTVEEGEEIVKIAQKSGKICAVNYCYSAYP
MVRQARAMVRAGEIGKIRLVVTNFSHGHHGDATDADNPRVRWRYDPEMAGVSGQFADCGIHALHMASFIC
CDEVERLSADFASTISSRVLEDDAMVNFRLEGGTVGRLWTSSVAIGRQHGFDIQVFGETGGLRWASEQPN
QLIYTPVGGRTQVIEKGEAGLHEEAQRLSRVAIAHPEGFPLAVANIYCDLADAISGAARDGLPNAADGVR
SMAAVHTAVSSAKAGGEWMDARPPMFR
>gi|99078322|ref|YP_611580.1| xylose isomerase-like TIM barrel [Ruegeria sp. TM1040]
MSIRIGNAPCSWGVEFADDPRNPTWRSVLKDCAEAGYKGIELGPVGFMPEDPVELGEALAEHDLDLIGGV
VFRAYHDPAAWEDVVDATHRTARALRAHGAQHLVLIDSISPRRAPTAGRAAEAEQMDKAEWTAYRNRIAE
SARIGAEEYGLTVGIHAHAAGFMDFEPELERLLSEVDESLLKICFDTGHHSYAGFDPVAFMKRHVGRISY
MHFKDIDPKVKAEVIANRTGFYEACGQGIFCNLGLGDVDFPAVRQVLLEAGFAGWCTVEQDCDPTLDPDP
VGDALKNREYLETIGFN
>gi|99078323|ref|YP_611581.1| oxidoreductase-like [Ruegeria sp. TM1040]
MSEIGIGILGGGYMGKAHAVAMAAVGAVFNTALRPRLEMVCASSPDSAERYRQAYGFARATADWRELVHD
PRVEAVVIATPQEVHRQIAEACFALGKPVLCEKPMGASLADSAAMVAAAEASGVANMVGFNYIRTPASQF
ARALVAAGDIGEITWFRGEHTEDFYANPETPASWRTSGMANGTMGDLAPHMVNAALALIGPIARVMAEVE
TVHKERPGGQVTNDDHAQMMCRFENGAMGQMYFSRIATGRKMGYAYEITGTKGAIRFDQEDQNALWLYRM
EGPEAERGFRKILTGPAHPDYEPFCQGPGHGTGYQDQIIIEARDFLRAIETGEAQWPTFRDGHDVNRVIA
AGLAASESKTWKDIKDF
>gi|99078324|ref|YP_611582.1| thiamine pyrophosphate enzyme, central region [Ruegeria sp. TM1040]
MSAQDDTIRLTTAQAIIRWLCNQYIEIDGEEMRLCGGGFGIFGHGNVTCLGEALNTVRDALPLYRGQNEQ
SMGFAAAGYAKTWLRQRFMFCTASAGPGTANLVTAAGLAHANRLPMLMLCGDTFLTRLPDPVLQQMENFN
DPTFGVNDAFKPVSRFWDRICHPAQVIQSLPAAIATMLDPADCGPAFIGLPQDVQGWTYDYPTKFFDKKV
HRIRRQAPDADEIADAVAALAAAERPILIAGGGVQYSRAAETLREFAETHQIPVVETIAGRANMRATHPL
NIGPIGVTGSDSANAIAEKADVIVAVGTRLQDFTTGSWTAFSKDAQFISINAARHDAGKHMSLPVVGDAK
LSLAAIEAATDYNAPLDWVAYAQDQRSKWDRYVVENTAHGNRPNSYAQAIGVVNDLCDPRDRVVAAAGGL
PAEVTANWRTLDIGTVDVEFGFSCMGYEIAGAWGARIAQSQMEPDQDVITFCGDGSYMMLNSDIYSSVLS
GKKMIVLVLDNGGFAVINKLQNNTGNQSFNNLLADCPTIAEPFGVDFVAHAASMGAMAEKVANPAELGEA
FKRAKAADKTYVIVMDVDPYEGWTTQGHAWWEVGTPHITEDEAVRTAHLDWESSRSKQRKGI
>gi|99078325|ref|YP_611583.1| PfkB [Ruegeria sp. TM1040]
MNLIDGIKGNRFAVFGRAGMDMFADPIGTKSEDATTFRADLGGSSANICAGLVKLGAEAALVTSVSDDAV
GRFCVNRLRDYGVETRYVRAVGGEARTSLAVYESRIDDFQNVIYRNGAADFQVTKADMDAVDYSAFSALI
TAGTVFAAEPSRSATFRAFEHARTAGLPVIFDIDYRPYSWPSPEVASEVLTRAGEASDLIVGNDEEFGFM
AGHIDKGLEKARALAAQGRMVIYKMGEAGAITIAEGQEIRTGIYPVTAVKPNGAGDSFMAGLLASIAQGH
ALSDAVLRGSACASIVVSQPGCANAMPTTAELEAFLASHPGPTV
>gi|99078326|ref|YP_611584.1| myo-inositol catabolism IolB protein [Ruegeria sp. TM1040]
MHIAPHDNQNKPIVDAEHDLVPLNYFNIVKLRRGEVFEYAVPGYETCVVPATGTVDIDVEGAIYPDLGNR
TEDVWDGEPEGVYVPVGAKVRITCKTDVTETFIAGAKYDKVLEPFDVRADALDVVQYGSDDTKTHRKIKH
ILGANHHDKVGRLLVSELYTVGEGGWSGFPSHKHDTDRLPDETRHDETYNFRFKPNYGSGVQMLQREDNQ
PGDAYHIMDGSTVLIDKGYHPCAVLPGYQMYYFTILGGLSQRSLKQYFQPTHAEQLHTIPGIMDMVAKFK
>gi|99078327|ref|YP_611585.1| fructose-bisphosphate aldolase [Ruegeria sp. TM1040]
MSLATLRDVLQPALKDGYAVAGLVTLGWEDMRAYVAAAEAEHVPIILQAGPSCREHTPLPVLGKMFRHLA
EAASIPVVAHLDHGYTAEDCRIALESGFTSVMYDGSRKALQQNIDETAAIAEMAHSAGASCEGEIGFVGY
SGGEGSAGTDPEEAARFARESGVDAMAISVGNVHLQQDKEGGLDELRIRAIEALTDVPLVIHGGSGVPVA
QRQALARGSKICKFNIGTELRMAFGQALRAAVNADDARFDRVQILKETHDPVVTATRRVLQAFKGA
>gi|99078328|ref|YP_611586.1| myo-inositol 2-dehydrogenase [Ruegeria sp. TM1040]
MARIGLLGCGRIGQVHARSISQIEGATVTAVADAFAEPAQALADSTGAQVLDPLALIESTEVDAVVIGTP
TDTHYDLIHAAARAGKAIFCEKPVDLSSDRIRDCIAAVERAGVPFLTAFNRRFDPNFADLQTRLRQKQIG
EVEIVTIQSRDPSPPPVNYIQSSGGLFRDMMIHDLDMARFLLGEEMVRVYAVGSALIDPEIGKAGDVDTA
AVTLTTASGKICQITNSRRASYGYDQRIEVHGSGGMLRAENVHETTVEIATQSGFTRAPVQHFFLERYKA
AYHAEMSHFVAAIETGSAPTPSLFDGLQAQLLADAATRSWVEGGPVDLT
>gi|99078329|ref|YP_611587.1| hypothetical protein TM1040_3353 [Ruegeria sp. TM1040]
METQSIAPRGRFVARAFLLKARDIGPGLALAAMIAMAAQFISDHYGAPVMLMAILLGIPFQFLSQEPRTG
PGIQFAARVVLRVGVALLGLRVSVEMIHGLGMEFILVVFAGVFLTIICSIVLAPMLGKDRLFGFLTGGAV
AICGASAALAISSVLPKTQDSERNLSFTVIAVTLMSTVAMIFYPILAESLGLDARHAGVFLGGTIHDVAQ
VVGAGYSIDTETGDFSTVVKLFRVTLLAPIVFLGALVLRNQVPAGAKRPPLIPGFVLAFLIFAALNSMHL
IPEVLVQPSDTLSRAALVTAVAAVGMKTSIGELRSLGGSSVAMIVAQTIGLAVFVLAFVVM
>gi|99078330|ref|YP_611588.1| di-haem cytochrome c peroxidase [Ruegeria sp. TM1040]
MRCKLHHLVSLLLTVFIAVSAPHWAAAAPDVPPALTPDDFMATDPAKAELGRLLFYDKILSGNRNISCGT
CHHPRHGTSDGLSLGLGEGGHGLGSERQSDTGQNRVQKRVPRNAPALWNLGAHALEHVMHDGRVSRDPIY
ANGFNTPAEEWLPQGLQSLLAAQALFPMTSSIEMAGNVGENEVIGAARDRIDAAWPILAKRVRVIPEYSE
RFISAFEDIRTAPDVNITHVAEALAHFMVQDFTSYDSPFDAYLSGDNTALSASQKRGADLFFGTAGCSGC
HAGSLLTDQGFHALGLPAFGPGRTRKFDPYARDVGRAGESDALEDFYRFRTPMLRNVALTAPYGHNGAFP
TLELMVRHHLDPVRSREAWSPELLVLPDVTWLREIDFVIRQDRLEMARQAAARDIDIPPRTDAEVADLVA
FLHSLTGARAEAQTSEIPKTVPSGLPVDR
>gi|99078331|ref|YP_611589.1| Sel1 repeat-containing protein [Ruegeria sp. TM1040]
MIATTGFAEIEKARDLMEAGDFEDAKQELWPAARSGNADAEELIGVMYAMGLGVERDDARAFEWYLRSAM
KGHPGAQSGIGWYYEVGRGMPAPDLVRAYMWYTLSAIGGDPDAAISLEEVVKKMTPAQIEKAHILVSDYK
VWMYPFN
>gi|99078332|ref|YP_611590.1| stress responsive alpha-beta barrel [Ruegeria sp. TM1040]
MILHCVFCNFSDEARAVEQHAVLSELRDFALSIRRCMSAEFGPNRDFEQKTQDYSYGFVLQFKDKDALDE
YAKHPTHMALAARLVDLCVGGADSILVYDLEVED
>gi|99078333|ref|YP_611591.1| TRAP dicarboxylate transporter- DctP subunit [Ruegeria sp. TM1040]
MLKTLVKTAALSVLLAGTALTASAADYTLRATANSNENDEDYDGLVVFKNYVEAASNGAIEVELFIGTQL
CSNGAECLQGVADGSIDIYISTSGGASGLFPYVQVLDLPYLMADDRIAEHVLSGDFTRTMRDMALEDSGD
TIRLMTIGNTGGWRNFANTKRRIAEPADMEGLKIRTVVADLPQELVKALGASPTPIPWPELFTSFQTGVV
EGSKNGITDIMGMKFPDAGLQYVTLDGHAYMGALWWMSNQSFQAMPEDMRRVVVDGFYALQQATFASPKR
KSIAAYEEFVAGGGDLYVPTPDQKAAFKEAASPVYDWFKSNVTRGDEIFTALTDAVAAAEAEIDADRAKD
LK
>gi|99078334|ref|YP_611592.1| TRAP dicarboxylate transporter- DctM subunit [Ruegeria sp. TM1040]
MLIWFLPVFLVLLMIGLPVFFSLLAAPGALLILNGQERDLTLLYRNLYNGMDSFPLMAIPFFMLAGELMN
RGGITQRLVEFSQALMGHLRGGLAQVNILSSILFAGLSGSAVADTSALGSMLIPAMEKEGYSRRFAAAIT
AASSVIGPIIPPSGIMIIYAYVMGESVAALFLAGIVPGVLVGVGLMVAVRLMANRYQLPEAKRVVFEKVE
IGRMESVVSFLLVRLNLGLILSQFVPSGADATATTHWLIFLASLLAAHGLMLGLRRQVSHEFRLICKRAV
VPLQTPVLILGGILAGVFTPTEAAAVAVAYAIFIGFGVLRTMTLADLPDVLTRAGITSSVVLLLVGAAMS
FKTVVSLSHAPEQLASFILTLSENPLILLFLINLLLFIVGMFLDAGPAIIILGPILGPVFADLGVESVHF
AIIMCVNLTVGLATPPMGLVLFVAAAVSHERVTTIARAILPFLAIEIAVIFLITFVPAISLTVPRLTGFL
N
>gi|99078335|ref|YP_611593.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MKPILALLAVLRPLNSGLLAVGRWIGVCAVAAMVIAILIQVFFRYVLGNALPWPDEAARFCMLWMTGLMA
PTAFRRGGFVAIDVFEVLLRGVAVHLLQLVLLGIAMSVLILAFQIGYKEVGGIGGRFATASLYVPTSFAF
DEWYRVPRSWMMMSLLIGVGLLILVCIELMLERVVHIFGQGDLLPARDKFTMGGAE
>gi|99078336|ref|YP_611594.1| flavin reductase-like, FMN-binding [Ruegeria sp. TM1040]
MSIDGPTLTQSFEPDPSNTRLLRDAFGRFATGVTIVTAATEEGPVAITANSFSSVSLTPPLVLWSPDRNS
RRFPYFERAEHYAIHVLAAEQGDLCWHVAKDAFGLKEMDLAVNDEGVPVLEGCLARFECRRTAIYDGGDH
AIVLGEVRRATMREDGEALTFFKGQMGQFAAR
>gi|99078337|ref|YP_611595.1| aldo/keto reductase [Ruegeria sp. TM1040]
MDRVNLTSDLSFSRLVYGMWRIGDVKDTSPAHVEAKIAACLEQGITTFDQADIYGDYGAEAILGGALKAN
PSLRDQMEIVTKCDIVAPIGRYADKSVKYYDTSRAHIMHSVETSLSEMGIEQIDLLLIHRPDPLMDHNET
GAALDELVTSGKVRAVGVSNFRPWDWSLLQSAMKTPLSTNQIEISLGEVSPFTNGDLAFHQQHNHPVMAW
SPLGGGGLMTATSELTKRMDAIAAAQGVDRAAVAVAFLLRHPAQILPVLGTNNLDRIKTISDATKVELDR
ETWFKLYEAALGKEVP
>gi|99078338|ref|YP_611596.1| alkanesulfonate monooxygenase [Ruegeria sp. TM1040]
MTVVPVTSADLDAVEVSWFAALCSDDYQFLGVPDGNLRSSWAHCSNIVKEAEQQGFRNILCPSSYQVGQD
TLSFVAGCAPITDKINLLAAVRCGEMQPIMLARTIATLDHMLEGRLTVNIISSDFPGEKADSDYRYQRSR
EVVEILKQAWTRDEINYQGEVYSFSGLTTDPARPYQTGGPLLYFGGYSPAALELCGQHCDVYLMWPEKME
ELQGRMQAVNAVAEKYNRTLDYGLRVHTIVRDTEAEAREYADYIVSKLEDERGSAIRERALDAKSLGVSH
QAKNREIADSHGFIEPNLWTGVGRARSGCGAALVGSTDQVMSKLEDYQKMGIRAFIFSGYPHLEEAKHFG
ARIMPHLKTCSLPEAHGRVPSTAPATPLAVGERR
>gi|99078339|ref|YP_611597.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MVYQFFLQGKLLPMTDAPISATSIPLYLQISESLIREIAAGRLVDGERLPPERQLAAQYGTTVRTLRKAL
LELEKQSLLERVQGSGNYVRSSQSAQSIYSMFRLELHQGGGLPHADILSVDYVKKPDDLPAFGTSAHGNR
IRRLRYLDGVKIAIEEIWLDGDSGRVDPAQMSDSLYRYYRLNLGFWITRAEDRVSIARVPEWTPESFTKP
AGEITGYIERFSWAQTPDAVEFSRTWFDTDKALYVQRLT
>gi|99078340|ref|YP_611598.1| oxidoreductase-like [Ruegeria sp. TM1040]
MSKPTQYGIIGCGMMGQEHLRNIALLPDARVAAIFEPNALMQAEAAKFAPDAQFVDSVEALLAIAELDCI
MIASPNFRHVEQLETLASQNPLPVLVEKPLFTTLDDLNRIEEFAAHYPAPVWVAMEYRYMPPITAFLNEA
DTATGGIKMLTVREHRFPFLSKVDDWNRFNAQSGGTFVEKCCHFFDLMRLALKSEPVRIMASGGQDVNHL
DERYDGSVPDILDNGYVIVEFESGARAMLELCMFAEGSKYQEDVSAVGPNGKVEAFVPGPGRFWPSHLGD
APVPKLVLSPRNPKGPEERDIPVDPTILDAGDHNGSTFYQHQKFLELVRGERSTPEVSLNDGKMAVLMGL
AAQMSIAENRTVEISELL
>gi|99078341|ref|YP_611599.1| hypothetical protein TM1040_3365 [Ruegeria sp. TM1040]
MNDASAHPDDPHYVNRSGWLRAAVLGANDGIVSVSSLVVGVAAADPGPRPVLIAGIAGLVAGAMSMAAGE
YVSVSSQSDVEQADIERERRALSETPEAELEELIEIYEGRGLSRPTAEAVAKELTEKDALGAHIRDELGL
SEVHTANPLQAALASGATFSVAAAIPVLAAILSPASAIIPVVLIVTIFALAILGALGAIAGAAPIAPAVI
RVVGWGVFAMVVTAVIGWLFGVSV
>gi|99078342|ref|YP_611600.1| response regulator receiver protein [Ruegeria sp. TM1040]
MKTELTTRQVFSYVFRDATPRKTLVICLAGTLVCAVLLALFEPRASRDLPFLWALFHWAAHLAGGLGVLI
AVYLTAQRAGLSDRWRVALAVAALPFGVAFLSVGIETLIAAAIGEPQFRADGYWEELQHVALPAISLTSV
ALLAVFKAVEMAFARQSEILSRFAKKPSLRTLFPELPAALGEDLVSASANDHYVHLRTTEGSAMLSRRFS
DCVEQLSAFDGVQVHRSHWVHLAHVSHVRTNGSSYLCSMLDGTEIPVSRRKHADLKLSLQHFTKTARRDT
I
>gi|99078343|ref|YP_611601.1| MltA-interacting MipA [Ruegeria sp. TM1040]
MQSKSNLAALGAALCVLLSTPAHAENKLVSGAVGLGFGTGPTFPGADENDSGLFPVVDLKIGQYVVVNQR
GLGLEHSRSLGHGELSYGLGVGYDFTSRSVEDDLRLAGLSDVDAGAMATLFLEYQTGPFSYGLEVMRGLN
SDGHEGTRAKLSGGYDIQLSERAGLSVSPYLIWADDNWMDSFFSVSNAQSVASGLAAYDANAGMSQAGLN
LTASYALREQVIVFASVDYATLLGDAADSSVSFDDNAASLSAGVMFRF
>gi|99078344|ref|YP_611602.1| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway)-like [Ruegeria sp. TM1040]
MRYSVLLLCAGLSLAATIWLTLDEDPKRRNHFNAESTPLKMGVLTPEDGITLALTRTASGDTPHILLITE
ANREGVAAIDLTAGNWTGATDFFEVLDEIGAGNLAKIALRANRGELSIERFEYDRLLPAAGSATRHVASG
TNFPEHQEEANAQGVFNFPKFGAATPPVTSVETSPQTLLDYEVEICARFDRDIKTVEDFDAARKGFFLCG
DFTDRAVLSRLVDPDNLDSGTGFSDAKSGPGQFPSGGLFVVPNTWQDFVAEERLVTWVNEELRQDTRAGD
MILSFRDLIENVLADTQRQRFLYRNRYWHLVNDGTIGRGQVLMSGTAEGVIFMPPTLRQILRGALKYVTE
GDVFKGTSPYTSVVASFIKEELASGRYLQPDDRVTHLSSHMGLISTQIVEGER
>gi|99078345|ref|YP_611603.1| hypothetical protein TM1040_3369 [Ruegeria sp. TM1040]
MSRRDEGNMVADAGALLPNGDTVSTDAIKVPAGRVNRLMRLGGLAAGIAGGATLQAIAGIARGTRPDARS
LLASPANVRRVADELARMRGAAMKIGQLLSMDAGEVLPPELAQILARLRDRAHIMPPSQLGQVLEREWGA
GWRRQFKRFDVRPIAAASIGQVHRARTRDGRDLAIKVQYPGVARSIDSDVSNVGALLRLSGLLPKGFDIS
PYLAEARRQLHEETDYAREGAQLKRFAEWLTDSDTFVVPQYHADLSTAQILAMSYVAGQPIETLADADAA
TRNRVMTALVDLSLREVFHFGAMQSDPNFANYRYVPQSGRIVLLDFGAARDLHPLVTKSYADMLRSGLVG
DDHGIWDAARALGLISDGPDIGSSEARLLALIAGVFEVLRAQEFDFADQTLIRALNEEGMALAQSGYHPP
SLPMDVLYLQRKFGGLFLLGNRLRTKLCLRDIIDPYL
>gi|99078346|ref|YP_611604.1| deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp. TM1040]
MATQEPQIGPATRAEALLRMEAFTPRMGLNYATFRNHDYGPQRQSAVSMLSPYLRRRLLTEPEVIAAALA
AHGPQEADKFVQEVLWRGYFKGWMERRPEVWANYITGRDADFVALEEDPGLAIRVNAAETGETGLAYFDT
WAKELVRTGYLHNHARMWFASLWIFTLKLPWRLGADFFLRHLLDGDPASNTCSWRWVAGLHTRGKPYVAQ
ASNIARFSGGRFAPQESELATEVTGLMDEEPEGLPHVNPLRSVLSPEEAKPTAVLLTEEDCMPASADLAS
LDIRGAARLYCSHLRSPRRVAAAVSTFEEDALADTVARIGLDAQPWAASEPEALADWVQSIGAQQIFMPY
ATVGPLGDWIARALPLLRARGVAVAEWQRDWDGLVWPHATAGFFKVKKRLPDILTKAGLT
>gi|99078347|ref|YP_611605.1| histidine kinase [Ruegeria sp. TM1040]
MHAHRTSKETPDVSVTRERPGPVLCNALDILDEGFVLFDRDRKLVFANKSYAAMLGPHAHLLEPGRAMQE
IISQAVASGHIRILRGAEQGMPAFLAALGTLDSATIEISVKDGTQREINLTCLEDGHLVAKVKDVTEQRT
AEARARTLLNKAIDAVDFGIALTDENDRLVFANQKYREVADPDGALLEPGRHIVEAYSQAIETGVFQLPE
GSTAAEILSELQDLIGSAAKGFSLTSSTGREIVGNIYETDLGGKLLTLEDVTDQLRAERLYTDAVGRLPV
GVAIEEASGTLSHCNNAFAEPFGHSAEDLMKLSDTERFLSLAPMIQSIAGQDVGTRGVEIFSAAIKKQRD
TLQPMEVCFRNGRHFLVERAITEGDGRVVVVTETTALKEAERRSLETLTDTIQSLEEGLVVFDSDAGFLL
GNRRWRDLFFGDTSEPAPGERVSMLWQRLVCAGAICTPAGTTPEAYAQQLDQFTQSLGQNETLFLRDGKT
LLVSAHRTEQQGFLLTFVDVTEQRRAEAEQREADLLLRKIVDACPANFLVSRVDDGKIIYCPPPSRERFG
NITSTLSFFLNAEDRQTYLDALLPTGALDDYRVQFRRADGSIMQGITAARVTEYKGEQVIVSSTRDISDL
LAMQEELQQQRDAAHQAEKLSALGELLAGVAHELNNPLSIIVGYAQMLEGRLQDKVLSKRVDRIAEAADR
SARIVRAFLAMARQRPTKIEPCSLNDIVLAALDVAGYGMRSSGTEILSELDDDLPLVSGDADQLVQVFSN
LIINAEQALAPLGQAGRLTIRSSFDPAQNQSVVEIRDNGPGIPAAIRARIFEPFFTTKDVGKGTGIGLAF
SHRIVDAHGGQLDLETTEGEGTRFFVRLGVHDTGRPLKNDPEDDTTP
>gi|99078348|ref|YP_611606.1| response regulator receiver protein [Ruegeria sp. TM1040]
MLEDLRCVPTLATDARAALGVLEQDGFDMIVSDFKMPGMNGAEFYDALLNRHPQYADRVGFVTGDALSED
IFRFLSKVGRPHIEKPILRDDLSALLERLTCKGVNG
>gi|99078349|ref|YP_611607.1| two component transcriptional regulator [Ruegeria sp. TM1040]
MTHAAEAKRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTDGLTAL
RTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQGFAGEESAQRDRMTG
TVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRVLNRDQLLEQAHDRGWEHFDRSIDLRI
SRLRRKIEQNPTKPETIRTVRGIGYIFD
>gi|99078350|ref|YP_611608.1| hemolysin-type calcium-binding region [Ruegeria sp. TM1040]
MTIKLLKPFSNVLGWNAKKGLVEPSDSSDPSRGDAETQRDPVEETDPISRGDTQPDTETNDGRDTGGSDT
PDRGDDRDPDRGGNDGPPSMSVSANIFTRFDTNLAEPGFLTPGLANGLNITPGNIWIDWNGENAFEGTHG
VDKAWGLWGDDDIYLYDGNDVAYGGAGNDLLHGGRGNDALYGGIGNDFIIGDVGSDTIDGGSGNDRLQGG
RGNDMINGGDGNDRILGEEGRDVVRAGDGDDFIEGGDDNDLMWGDEGRDTMLGGDGDDQVFGGIGNDLLQ
GGLGNDHMEGGGGADVLVGDQGNDLINGGSGNDMMTGDLGNDELNGGTGNDTMEGGAGNDIMRGGEGSDF
IYGDGGNDYIQGGGGNDHIYGGTNSAGDIGDYLFGGEGYDLFYFDFGDSGANGGPRDVIQDFSAGGGDLM
VFQGFGATTWRGGDGFSGGVGAEAYFEQTVSDEFGAVTHVYLRDDIGHEADLSLTLLGYIDLTESDVFVI
A
>gi|99078351|ref|YP_611609.1| sarcosine oxidase beta subunit family protein [Ruegeria sp. TM1040]
MRYSALRLIKESLTGHRGWGPQWRDPDPQASYDYVIIGGGGHGLATAYYLAKEFQGRRIAVLEKGWIGGG
NVGRNTTIIRSNYLLDGNEPFYEFSLKLWEGLEQDLNYNAMVSQRGILNLVHTDAQRDAARRRGNAMILN
GSDAELLDTDGVRALYPFLNFENARFPIKGGLLHRRGGTVRHDAVAWGYARGADQLGVDIIQNCEVTGFR
VENGRVTGVETSRGLIRAAKVGVSVAGSSSRVMAMAGMRLPIESHVLQAFVSEGLKPFIRGVITYGAGHF
YCSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVVESGMSLIPGLGRARLLRSWGGIMDMSMDGSPFIDK
THIEGLYFNGGWCYGGFKATPAAGFCFAHLLKTDRPHETAKAYRLDRFMTGHMIDEKGQGAQPNLH
>gi|99078352|ref|YP_611610.1| sarcosine oxidase, delta subunit, heterotetrameric [Ruegeria sp. TM1040]
MIINHPLLGPRDAQEFTYLGDAGLINRPYWLSENAMRAFHDYLHLRENPAGLHRELWFHEQGDRSWLVVT
RDTTTHEITKVELARDVARASRSAEVSQ
>gi|99078353|ref|YP_611611.1| sarcosine oxidase alpha subunit family protein [Ruegeria sp. TM1040]
MTQVNRISGGLIDRSTELNFTFDGKNYQGYAGDTLASALLANGVRLMGRSFKYHRPRGVLAAGSEEPNAL
VELRSGGRQEPNTRATVAEIYEGLSANSQNRWPSLKHDVMAINDRFSAFLSAGFYYKTFMWPRAFWEKLY
EPVIRKAAGLGSLSGEGDPDAYDKGYLHCDLLVIGAGPAGLSAALTAGRGGAQVILADEDFQLGGRLLSD
AQSLCNQSNAEWVAATQAELIALPNVRVMPRTTVFGAYDHGVYGAVERNADHLVAPEENKPRQTLWRIYS
RRAVVAIGAIERPIAFENNDRPGVMLAGATRAYANRWAVTPARSVVVFANNDDAHQTAKDLIAKGIEVHA
VVDTRSDAPGIEGTELLAGAQIIGTKGRLGLTSVTVRLLDGRTRDITCGALAMSGGWNPNLGLTCHQRGR
PVWREDIHAFVPGSDLPAGQSVVGAAMGEMSTHAALRTGAETAREALSDLGFTAPGVETPKAEDAPISLT
PFWHVADAKRAWLDFQNDVTVKDVKLAHQENFTSVEHLKRYTTLGMATDQGKTSNVGALAVMAELTGKPI
PETGTTIFRPPYTPVSMGALAGRAVGKDFHPTRLTPSHKWAEEQGAVFVEVGNWLRAQWFPKAGETHWRQ
SVDREVLATRNSVGICDVTTLGKIDVQGTDAAEFLNKIYANGFAKLPVGKVRYGLMLREDGVAYDDGTAA
RLAEDHFVVTTTTANAVLVYRNMEFARQCLWPDLDVQLISTTEAWAQYAVAGPNSRKLLQKIVDPEFDIS
NAAFPFMGCREITVCGGLRARLFRISFSGELAYEIAVPTRYGDALMREMMTAGAEFDVTPYGTEALGVMR
IEKGHAAGNELNGTTTALNLGLDRMVSTKKDFIGNVLSRREGMNAKDALNLVGVRPVDPSHSLPAGGHLM
RRSGPVDATQDQGYVTSAAYSPTLKSAIGLGFVKSGFERMGEQLRLVNPLEGQEILVEIVSPHFVDPEGE
KLRA
>gi|99078354|ref|YP_611612.1| sarcosine oxidase gamma subunit family protein [Ruegeria sp. TM1040]
MHRLKPLTPMGAVTPRVDTIGTLTITEIVHQALASIAAREGQMEALQQKLPLPLPDVGKTRTQGAFSAFW
TGPAQWMIVANHDQHEALAYEIKQMVGQTASVVEQTDGWCRFDVSGAALYDLFERLSSAPVRRMTKGDVI
RGTVERLGAFLWRLDQDHMAVIAPRSSAASLHHALIAAARSIA
>gi|99078355|ref|YP_611613.1| transcriptional regulator [Ruegeria sp. TM1040]
MIDAKTTPPPLTLGILVFPGFPMACLTSCIEPLRAANEISGREAFQWKVVAEDAGPVVSSAGVSFAPDCT
LSDTTELDLLLFTASPSARFAEPSRANAALQRLQRRKARLGAISGGVFALARTGLTRENPLSVHWCYEAA
FHAEFPEIPAQSTVICEQGDYTTISGASAAFDHMLTLIETHLGGDIMAEVACWFQHPYIRSAAAAQKTPV
HDTAKSQNLLPKQVARAIEHFAEHIESPIQISKVAEAVGVSTRSLERSFKQATGQGPLKYYRKMRMKQAR
QLVLYSNTPVTEIAFMVGYATPGAFLRHYRESFGMTPIADRRAKNSMRVKGSDALPS
>gi|99078356|ref|YP_611614.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MALKIEMLRGFATVARSGNLSDAAQVLGRTPSAVSMMLKQLETHLGEPLFETDRKSKLTALGAFVLEQAE
RELQQFDNMVRAIEGFAKATHGHVRIATVPSVAGTIIPQVFSRHINDYVNVDIELRDMDSHSILHELSRD
RIDIGIATLGQQGAGLSSQHLLSDTFGVICAPSHELADSTGPVTWEALADERLIANSLSAGISAAASVAL
HDRAMLSAHNLTSILGMVQANIGITILPEMAVRASNSAGLVFRPLTEPHAKREIHMLRRADSNQSPAARL
LERHILQIAKEISRDTVMRHS
>gi|99078357|ref|YP_611615.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MTDIQKNLIAGEWLTGEGEIENRNPSDLSDLVGIFAQASSDQLEATLDQAKVAQREWAAYGLERKQAVLM
AIGNELIARSEELGTLLSREEGKPFAEGKGEVYRAGQFFTYYAAECLRQIGENADSVRPDIEIDVRREAV
GTVAIISPWNFPTATASWKIAPALCYGNAVVWKPANVTPASAVALAEIINRQDIPKGLFSLVMGAGRTVG
QRLVESPKVNAISFTGSVPVGKGIAAAAIQNLTKVQMEMGSKNALAVMDDADLNLAVSLALGGAFGGTGQ
KCTASSRLVVHAAVHDAFVEKLVAGAQAMKVGHALHDGTQMGPVVSAQQLEENLAYVDLGRSEGAELACG
GTRLEMPHDGFYMSPGVFLNTSNDMRINREEMFAPLTSVIKVDSYDEALATVNDTNFGLTSGIVTKSLAR
ATHFRRNAQTGVVTVNLPTAGTDYHVPFGGRGDSSYGPREQGKAAAEFYTTVKTAYISAGPV
>gi|99078358|ref|YP_611616.1| peptidase M19, renal dipeptidase [Ruegeria sp. TM1040]
MRIDGLQYANWSEKIFRQLREGGVDAIHVTIAYHENFRETVLNFEKWNRWFEQYPDLIMKGQWAQDIDIA
RETGRTAVFFGFQNPSPIEDDIGLVEILHSLGARFMQLTYNNQSLLATGCYEAEDMGLTRMGKQVVKEMN
RVGLVIDMSHSSDRSTIEAAEYSTRPIAITHANPHAWSPALRNKKDAVIRAVTENGGMFGFSVYPHHLRD
KSDCTLESFCEMIARTADTYGVEHLGIGTDLCQDQPDSVVEWMRVGRWTKEIDYGEGSKSAPGFPRMPSW
FEDNRDFENIEQGLRSVGMTTGEVAAIMGGNWYRFFAESFGPKAGG
>gi|99078359|ref|YP_611617.1| BCCT transporter [Ruegeria sp. TM1040]
MSDTSLETHLKKSRLNTPLFLISGGFIALFCIAALIDLEGLSAAVDWGFNVSATYFGLYWQVLLLATFLI
GLVLCVLPGGKAIMGNLAAPEFTLFQWGSMIMCTLLAGGGVFWAAGEPIAHFLYSPPLYGAEGGTEAAVN
PAIAQSFMHWGFLAWAILGSLSTVMLMHYHYEKGLPLAPRTLLYPLFGDKAINGPIGLIADASSIIAVVA
GTVGPIGFLGLQVSYGLSDLFGLPDVFATQFMVIGGLVAIYTISAMTGLSRGIQLLSKINVILAAALLIF
VLVAGPTGFIFGSFFSGFGTYLGNFFQMALFRGDAGVFGEPGWLGWWTVFFWGWFMGYGPLMAMFIARVS
RGRSIRSIIIMLSIIAPIVTNFWFTIIGGTGISMELAAPGTISTAFEGFNLPAALLAITSNLPMGFLISL
LFLILTTIFVATTGDSMSYVISATMSDGENPPTMVRIFWGVAMGIMAIILISVGSGGVSKLQSFIVVTAV
PVSLILLPSLWDALRITIAKGREQ
>gi|99078360|ref|YP_611618.1| hypothetical protein TM1040_3384 [Ruegeria sp. TM1040]
MTTIPRRDPNLVMRLARLGSIHQSRLSFMRVLTRRLAREGWQFERTAFDVNSAGEGHAVYTAYGPERAYS
LIAFAHDLPPEKRSDRVIADAWDTTFTLFDGVPSAEDIKRLSQNIPLQEAGRVTGSELSVSRANRSVRLW
EHVVSSLAQGRQPDPNRINAVGYLMRTTAVYGSGKLGAADREMIADRPEFSAPFQVEMLSVYLTRWFVLD
LVQHMANQRAAAMGQDAAQLCPAIARSTGIGNSTGLGMAPFLLNHPVLFNNWIAAREAAIQTVRQIETAS
ASAIALFRSLIARGRVTIDTWQSEHPIQITKINALRADLLKLEEYLSETDLSARFPWDALYRWAEGTLSL
EGQEWIASLILEPYGARVDKFADEMSADNTATFRIAGAMSVKDLRALLTDIYAWAIETDWQAPENRARAW
YVSEEKLEPRLGERFEEPIEAFEQPLAPGRDAAQLFNALAHWPDEAQVADFLLRHPEHRHVLRRAQIVGR
APYAEIRDNTISAQVLPIDMLRCKLAFFGATQFDPRSDRWVRICMYGGAPLPTELTPENADFWVFPETDP
VLEEGAA
>gi|99078361|ref|YP_611619.1| hypothetical protein TM1040_3385 [Ruegeria sp. TM1040]
MSHSLNEIEAMAKRAGRGAGLSWGLAEEAAKGTRWLSSFGFPGTEMLAELLELNDQIPPIDVSPVSLSAA
LWHAPARRMSPLIAGASLSDCAVRLLDRGTITMQDVSLPLLAVPFMGGAALRLGVPVAAEWEGARLATDG
KQLCVQGEPDALRAGHAGLLVFSAPADMTGKREPVMRADVSEQSWETLGEFAHRTFAPATEESRLRGAGA
GTNDNS
>gi|99078362|ref|YP_611620.1| malate/L-lactate dehydrogenase [Ruegeria sp. TM1040]
MSDRQERTEMTATETLTLSEIESLAFDALVAAGTSPANARPLAVATAMTEADGVASHGLAYIPIYAQHVE
CGKVDGQANPKVAHPRPAVITVDAATGFAHRAIDLGFEQLIPLAKEMGVAVLAVNNSYNCGVLGVHTQRL
AQAGLMGFGFTNAPASIAPSGGAKPVVGTNPFSISAPGSDGTAALLIDQSASTIAKSEVMKHAREGKPVP
QGWVLDADGQPTIDPDAGLKGSMVPSGGYKGVGIALTVELLAAAMTGATLGAVASPFSGTAGGPPKTGQF
FIAIDPDATSGGLFQEKLADLISAFRDQDGARLPGDGRQSARLRAATEGVRVNAALLERVRALI
>gi|99078363|ref|YP_611621.1| hypothetical protein TM1040_3387 [Ruegeria sp. TM1040]
MDHWASAMEQHWGIQAELRQLDGEYDLNFLAETPEGTGYVVKAMRPDCEDWLVDMQIRTLDHISAADADL
PCPRVIPARSGQKMLRLEDAHGNARLVWVIERLAGKCYAEAAPKTDALIAQVGQILARTTVSLQDFDHPH
LARDFKWDLMQADWVNGALDCLEDGARRALIADIGDQFTALKPALAKLPQQAIHNDANDYNILVNGGAGT
GIEPKISGLIDFGDMCRAPRICDLAIAAAYVVLDHPKPEAALTALVSGYHAENPLSAPELDLLWPLLRMR
LAVSVVNSTLMATENPHDPYVTISQAPAWRFLEGHDLNGDLMAARLRAACGLPVVEGADRVMAWLDEARG
SFAPLMGQDLTDVPMGSLSVEKSLWPQNPFDMPLAEAARVGEEFNTEDQIWLGYYHEPRLIYTAPAFRNG
PWKASDRRTVHLAVDGFAPAGTTLHAPLEGEVWVVENRDSHLDYGGVIILRHKTPEGDPFYTLYGHLDPE
VVTRLQPGDPITKGEAFCRLGTAEENGGWAPHVHFQLALSCDGIETDWPGVGSPDDMYLWRALCPNPAAL
LNLPDDKTCYRPTDKSTVLEKRRAHFGGNLSLTYSDPVMLVRGWKHHLFDEWGRPYLDAYNNVPHVGHAH
PRIQAVAADQLRRMNSNTRYLHPAQTAFADKVLSKLPDHFEVCFFVNSGTEANELALRLARAHTGAKGMV
TPDHGYHGNTTGAIDLSAYKFNKPGGVGQADWVELVEVADDYRGSFRRDDPDRAQKFADLVDPAIATLNS
KGHGIAGFIAETFPSVGGQIIPPKGYLPAVYEKIRAAGGVCIADEVQTGLGRLGEYYFGFEHQGALPDIV
VMGKPIGNGHPLGVLVTTKAIAESFDNGIEFFSTFGGSTLSCRIGKEVLDIVDDEGLQENARARGAELIS
GLRALERKYACVGDVRGVGLFLGLELIHADGSEATEICSYVKNRMRDHRILIGSEGPKDNILKIRPPLTI
EAEDVEMLVSVLDEVLAEINPAE
>gi|99078364|ref|YP_611622.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MERFSNPNSILAFVIVAREGSVSRAADVLNLTQPAVSHQIRRLSEDIGVTLFTRTPRGLDLTPDAQHLLP
KAEEVLRVMAEFRRAASQHSDHISGTLRLGTIIDPEFIRLGRLLSQLGASNPRITTELVHGVSGEILERI
LRRQVDAGYYLAAPDQLEALPSETELHAQKLADFAYRIIAPPGWDARVAGAGWAELARLPWIGTPEVSVH
NRLLSRIFAEHDCQQNTVAQVDHEASMLEMVRSGVGLSLCRESIALHQRQSNGVVICETLSVPASLGVLT
LKDRLEDPLIAAFFDQLSAVWSPIS
>gi|99078365|ref|YP_611623.1| glucose-methanol-choline oxidoreductase [Ruegeria sp. TM1040]
MPTSSKAMSGELVGQKIKGDSIVSDMETHFDFIVIGGGSAGCLLANRLSADPSHRVLLLEAGKADTYPWI
HVPVGYLYCIGNPRTDWLYNTEADKGLNGRVLKYPRGKTLGGCSSINGMIYMRGQARDYDNWARLTNEPD
WTWERSLEDFKAHEDHHKLDDGADPVTGDNSRFSDMHGHGGEWRVEKQRLRWDVLDSFAEAATQTGIERT
EDFNSGDNAGVAYFDVNQRSGWRWNTSKAFLKPAKSRRNLTVWTEAQVEKLTFETTDGALRCTGALLHHK
GQARQVTARRETILSAGAVNSPQILQLSGIGPAALLKKHGIDVLKDAAVGENLQDHLQIRAVFKVNGTRT
LNTLANSLFGKAMIGAEYLLKRTGPMSMAPSQLGAFTRSDPSRSHANLEYHVQPLSLDAFGEPLHDFPAM
TVSVCNLNPTSRGTIKIRSGDFRDAPLISPNYLATDEDRKVAADSLRQVREIMSQPAMQPYAPTEFKPGT
QYQSDEELAKLAGDIASTIFHPVGTVKMGKDEDPTAVLDPHLRLKGVASLRVVDASIMPEITSGNTNAPT
LMIAEKAARWILAEA
>gi|99078366|ref|YP_611624.1| aldo/keto reductase [Ruegeria sp. TM1040]
MKRNRIGTTDVWVSDVSFGCASIGNLYREISDAQAQEVLQTAWEAGIRYFDTAPHYGRGLSEMRLGQFLY
NKPRDTYVISTKVGRVLSPGSPLDEADGFINPLPNAVRYDYSGDGIEASLDSSRSRLGTDYVDIVYVHDI
GTLTHGAANVGHMEDFWGSGYERLVTLKERGKIGAFGLGVNENQICLDVLAQGKLDVILLAGRLTLLDRS
GEEELVATCARAGTSLVLGGIFNSGILATGPIEGATFDYVPAEPEVLARVEALQRRAAELGLSLPAAALH
FGRDHPASASLLLGTAKAQQLQRNLDLMAQEAPQDMLAAFDR
>gi|99078367|ref|YP_611625.1| mandelate racemase/muconate lactonizing-like protein [Ruegeria sp. TM1040]
MTKITGLRTYDLRFPTSEGLDGSDAMNPDPDYSAAYVILETEGTHEGHGLTFTIGRGNEICIAAIKALGA
LVVGLDLDWIREDMGRFWRHVTGDSQLRWIGPDKGAIHLAAGAVVNAVWDLWAKDTGKPVWRLVADMSPA
EILRLIDFRYLTDVLAPEEALDLLKAAEPGKEERIARLIEEGYPCYTTSAGWLGYSDEKLRRLCREARAA
GFTHTKFKVGRDLSDDIRRLTIAREELGEDMNIMIDANQVWEVDEAIDWVNRLAFARPLFIEEPTSPDDV
LGHKAIREGVAPIKVATGEMCQNRIMFKQFIASGALDIVQIDSCRMGGLNEVLAVMLVAAKYDLPVWPHA
GGVGLCEYVQHMSMIDYVAICGEKDSKRIEYVDHLHEHFKHPCIVTGGAYQAPHAPGFSIEMKEDTLDAF
LFSDG
>gi|99078368|ref|YP_611626.1| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Ruegeria sp. TM1040]
MKLLRYGPLGQEKPGLLDQDGNIRDLSGQVADIGAATLGDAGLDALRALDPQSLPLVEGTPRIGACVGQV
GKFICIGLNYADHAAESGMSLPEEPVIFFKATSAICGPNDAVEIPRTSVKTDWEVELGVVIGKTAKYIGR
DEALDHVAGYCVVNDLSERDFQLHRSGQWVKGKSADTFGPIGPWLVTRDEVPDPQNLAMWLEVNGHRYQD
GSTRTMHFDVATVISHLSQFMSLQPGDVISTGTPPGVGMGQTPETYLKPGDVMELGIAGLGVQRQVTEAA
E
>gi|99078369|ref|YP_611627.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MNTMTQNTGRLAEKTALITAAGQGIGRASAELFAAEGAKVIACDINAESLAELAEVDGITALALDVTDAS
AVARAIQDAGPLNVLFNCAGYVASGSILDCDENDWDFSFDLNVKAMYRLTKLVLPGMLENGGGSIINMSS
VASSLKGVPNRFAYCASKAAVIGMTKSIAADFVTQGIRCNAICPGTVDSPSLHDRLRATGDYEQARKDFI
ARQPMGRIGKAEEIAALALYLASDESGFTTGQTHAIDGGWAI
>gi|99078370|ref|YP_611628.1| hypothetical protein TM1040_3394 [Ruegeria sp. TM1040]
MQRMGMVIGIKPERLDEYKRLHAAVWPDVLAQIRQSNIRNYTIFLREPENLLFGYWEYHGSDFAADMARM
AQDPRTQEWWAFTDPCQSPLPSRNAGEQWAMMEEVFHTD
>gi|99078371|ref|YP_611629.1| mandelate racemase/muconate lactonizing-like protein [Ruegeria sp. TM1040]
MARITRVELRMIDLKPKVERVDAIQSFVSQETPIVTIHDSDGASGTGYSYTIGTGGPSVMALLEQTLVPA
LIGKDADRIDGIWRDLLFLTHATAVGPITSLALAAIDIALWDLRCKKMGLPLWKAAGGSRDRIPLYSTEG
GWLHLETAALVEDALAMKEQGFRGSKIKIGRAHLSEDRARLGAIRAAVGDSYEIMTDANQGFTLSEAIRR
AKVLEEFGIGWFEEPLPADDVLSHQELSRRTHVPIAVGESMYSLSQFKDYLQVGAAQIVQVDVARIGGIT
PWLKVAHLAEAHSVMVCPHFLMELHLPLVCAVPNAKWLEYIPQLDGVTRQNMQISNGDAVPSDEPGLGID
WDWDAITAQEIGARSIGGA
>gi|99078372|ref|YP_611630.1| ABC transporter related [Ruegeria sp. TM1040]
MTEVTLTDVIKRYGQHQAVHGINLDIQDGEFVVLVGPSGCGKSTTLRMIAGLEDISGGEVKIGGRVVNDL
PPRERNISMVFQNYALYPHMTVRENLGFSLKIAKRPEAEIERAVTEAAQILGLDELMERKPAALSGGQRQ
RVAMGRAIVRQPDVFLFDEPLSNLDAKLRTQMRVEIKKLHQKVGNTVIYVTHDQVEAMTLADRIVLMRDG
HIVQTGTPLDLFNAPVDTFVATFIGSPPMNLVDGIVTETGALRLGDHITLPMPSEARGAVRPGQEISFGF
RADNLMPDGHSVEESGQMAPLELEVALTEPLGTETLLFAEFAGREVQAKMLNPRPVQPGERLPFHLMLDK
CHVFDRKSGKALRG
>gi|99078373|ref|YP_611631.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MDRNLNHRNRRRMLKALHFTGLFLTMAVICIPGLWIVLNSFRPTVEIMAKPPVWTPSFTLEHYRAMFGGA
GEGGVPVFQYFRNSLIVSVTSTLIAILIGMAGGYAFARYRFKGKSGYFVGLMLFRAVPGVALSLPLFIVF
ARVGIIDTHFGLILAYVAMNVPFTIWLTDGFFRQIPKELHEAAEIDGCTRWQAFWRVEFPVARSGVASAA
IFAFLTSWNEFALASQLTRSVGSKTMPVGLLDFTAEFTINWGGMCALAVLMIVPALILTFIVQKHLIAGL
TFGGVKG
>gi|99078374|ref|YP_611632.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MRPKRLPEWFVLLLPAFIVMAAVVLIPLLFSLYSSFTPYKLTRPSTLWRWVGTYNYEKILSDWKFWSAFG
RTVLFLTIVLNLELLLGLGIALMMNKVTWGQRTLRTVLMFPMMFSPILVGFQFKFIFNDNIGLVNNALQS
LGISDAALPWLVDGKLAMFSIIFAEIWMSTSVFAILILAGLFAMPRDPLEAAKVDGCTAWQTFRHITLPF
LMPFIYIAMTIRSLDVARAYDIVQIMTGGGPARRTELLWTLMSRTGYVDARMGLANAMGYVSILLSIVFT
IYFFRKLSAARAELGMAG
>gi|99078375|ref|YP_611633.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MKKSKFTKGLLASCAVLASAESALSSDWGSFEGVTIEAKLIGGQQYEGLYGRIADWEAATGAKVEIISKK
SHFEIDREIKSDMAAGTTDWCIGSNHSSFAPQYEGLYVDLNDYVDASVIEGFVPGTITASTVGGDLLMLP
RAQFDVSVLYYLKSNYEDAQKAEAFEAQFGYPLAVPQTWEQVKDQAIFFADPPNFYGTQYAGKDEAIVGR
FYEMVVAEGGNFLDEDNRPIFNSDAGQRALQWFVDLYEAKAVPAGTTSYVWDDLGQGFASGTVALNLDWP
GWAGFFNNPDSSKAAGNVGVAVQPMGSVTRTGWSGHHGFSVTDDCANKEAAASLVAFLTSEESQLAESAG
GSLPTRTAVWEANIAKARAGDDPFRTEALEAFAEGAKYAFAVPPIPEWGESTNLVFPELQAAIVGDKTVE
EALDDAAEAVDELMRESGYY
>gi|99078376|ref|YP_611634.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MTQTADKYRAPALEKGLDIIELLADYGDGLAQGDIARALDRSQSEIYRMLTTLVRRGYVVRSPGDDLYTL
SLKMFALSQRHPPIGRLLETAAPQMRMLTRKAWQSCHLGMESNGDVVIVASAESPGNWGLALRVGTVIGL
GNTGTGRVLAAFRPEDELSDLVAQHRLAVGEPPIDAFELRDHIARIRELGYERMPSATAVGVTNLSYPVL
NQDGRAIAVLTCPFLERIDDMKPPSQDEVHRMCKALAEDLTAFYCGTGDRTLFEGLEP
>gi|99078377|ref|YP_611635.1| amidohydrolase 2 [Ruegeria sp. TM1040]
MIDTHQHFWRLSRGGYAWMPEDLPALNRDYEPKDLRDILNDTGITGTIAVQADDSVAETEFLLSLSDAHP
WILGVVGWVDLEHADATRILTALAEHPKFLGIRPMIQDISDPEWMLRPTLAAGLNRLVELDLTFDALVLP
HHLKTLARFMERYPELRVVVDHCAKPNLRSGALDEWRDGLAAVAAHPNSFCKLSGLLTEAPPGAGLAELR
DCLDHVSQLFGPNRLLFGSDWPVLNLATDYAKWQRIICQYIDETPGLAQDTIGQLNPHFAYTRLSQHCTN
PNGAGA
>gi|99078378|ref|YP_611636.1| putative transcriptional regulator [Ruegeria sp. TM1040]
MRKTPEPQLDRELKALPPDQRWYEWLRRIEAVLFASATPVSREALARVVGQGVSVELLIDDLSAELESRS
FQVAHVKDGWFLRTRSAYASAIRDAQSAGHQVMDLNAFDVAVLAAIAYHQPITREGLKDIFGKDISRDLI
GRLHDRGLIGNGPRAPRRGAPYTFVTTDQFLLAFDLETLQDLPDRERLEDAGLARG
>gi|99078379|ref|YP_611637.1| hypothetical protein TM1040_3403 [Ruegeria sp. TM1040]
MYAPDRESLTDQNRIPFLPSWVTSARAEAPEYVSFLSGAALSHLHHAISLDEVPMNLVRDRLALRAAEVT
VAFAGRHETAAELRDAVHFLEPGDLPGPAGEIYLSWQRAVRRPVQANALHKGLGSVSSQLIAQSLAPKGR
APVEHAVSVLEECVSDDSIPVVAALILADAALARSLGWARILPVFALGLTTADLRKRDQSLRLACHQALQ
VAIIEILRHISECTRGVRNLAAVVPKLRAKGAAGAVEVFLTQDAAAASALPLPDRAARRLCDRLTSLGVL
RELSGRDSFRLYGV
>gi|99078380|ref|YP_611638.1| putative integrase [Ruegeria sp. TM1040]
MNQGMGPTESTISEHTRKAYATDWAHYTRWCRLNGHPTLPPSVAHIENYLTDLSRSSQLASSSLRRRRAG
IVWNYRQRGFDLEIQSTPLPDTVTALPTHQVQRPATKEAITPQEMRAMLATLPYDLRGLRDRAMLLVGYI
GGLRRSEIIGLDASPDRSDDSMGGLEFRDNFLRVTIEARTEVRTVTLHRGTSAQTCPVHSVQQWLHFAKI
EAGPVFVRTSRDGKRALSARLNDRHIPRLIKSTVLRSGIRADLPENERLALFSGQSLRVASAKLATADNR
VDLNLTRALGF
>gi|99078381|ref|YP_611639.1| ParB-like nuclease [Ruegeria sp. TM1040]
MAKRRRLIAPDASEIEALDEGFAAKPSVNPFETGQKSAPPIAKVSAETAKLRGMAAVTDRVELARDKADA
NKWRDAENAGQAVRQIPLAEIDRDYLRRDRMQVDEEELQELIASIQSHGLRSPVEVVALEDGRYGLVSGF
RRLEAFARLNLNRDGFSEIPAFLRQGTDSATAYVSMIEENELRANLTPYERGRIAVLVAGQGVFASVEEA
VDTLFAAASKAKRSKVRSFAAVHEGLGDLLRHPNAMSEKAGLKIAAALRAGGQAVLRRALGTADPDNERD
EWRVIEAALAELEATPKDKARGGRPRQVTQLQTRSLASGGELGAEVSPKGVRIDLKRANLDVDDVERLLE
AIEKHLLAEG
>gi|99078382|ref|YP_611640.1| cobyrinic acid a,c-diamide synthase [Ruegeria sp. TM1040]
MPLMGYASPKMFSILPYITTIHIHSSRSSNLMSTPPLPPYFNLDPEKAASKLPDPIQTTRFAKAAALCTK
GREDLARRGYAPDGEKRLRKFSTWEITRYLIPVAPQHLRRVLKANPELPQGDGDGGSKWFTLEEVLILRQ
HFASEGISTKEYLPYRPEGLPAKVTAVANFKGGVGKTSTAAHLAMSAALDGYKVLVIDLDSQGSMTSILG
GQIEDEWSTVFPLIAKDYAKAMVEENAVRAAAGEPELPLDETLNEALRVSPRNVIQKTHWPNIDLIGAQL
NLYWAEFQIPVWRMGLRSWPLWDALSNFLQDEGILDEYDIVFLDTPPALGYLTINALAAADILLVPLGAS
FLEFDSTGRFFDMLYSTFASIEEGENVAQRAAGLPEIKFEWDVVRALITRFDASQQTDMANVIQAYFGDF
MNAYRQDVTALVGQAGEQVNGIYEADYRDFNRDTYVRGRETFDRTYAEFKELLIGSWWRDTQMKEAE
>gi|99078383|ref|YP_611641.1| initiator RepB protein [Ruegeria sp. TM1040]
MADQSFDGDRLSGALSRETVKKNVAAIHISGKLTLLQRKLSNVLLLNAYDSLTSARSHTIDARTLAMMVG
YNSNDVDSLRASLRALAETVAEWDMLDEQGHQEWGVSALLSFAKLKNGVCEYAYSPALAQKLHDPKIYAL
INVKIQRNFTSGHGLALYENCYRFVRTGSTGWWSLDIFRKLMGVDGSSYYESYKHLNAKIIKPAVAEVNK
SSDIIIEPQTRKKGRSVSDIRFIIKENPQMAMFQIDDSEGLRNLAVYKALRGQGVSDRLARQWITEHGQD
YVQEKLDYVAGQGEVKSSVGYLRAAILGDYSAPETTKGTVQKKVDPETQAKLDELQRAREAEKAAEDAAF
KARAAERRERAKHLDIVETLVSRRNPTQKDADKRLFVSRLESDLDREHFRQHGWRSALNAAAIISFWQEL
EPDAFAEDVE
>gi|99078384|ref|YP_611642.1| malonyl-CoA synthase [Ruegeria sp. TM1040]
MANPLFDRLFGVYAGKTTPFLYLADGQVWTHARFLDQVAQIAHVLIKAGLTPGDRVAVQVEKSPEALALY
GACVQAGLIFLPLNTAYTADELSYFIENSGASLVICDGQNQSTLATIAEGLNASVETLNADGSGSLIERA
AAMATDFETVDRSGDDLAAFLYTSGTTGRSKGAMLTQDNLLSNAETLVKEWRFTDKDVLLHALPIFHTHG
LFVASNVTLLAGGAMIFLPKFDLDRVIAQLPKATSMMGVPTFYTRLLSDPRFTKELTQHMRLFISGSAPL
LAETHIQFEERTGHRILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVELKITNPETGTSLPRGDIGQI
EVRGPNVFQGYWQMPEKTAAELREDGFFITGDLGMIDEDGYVHIVGRNKDLIISGGYNIYPKEIELVLDE
QSGVLESAVIGVPHPDFGETVLGIIVPETGTSPDLESIMTSVQGQLARFKHPRKLMVVDELPRNTMGKVQ
KNILRDSYKDMFSD
>gi|99078385|ref|YP_611643.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
MGWISTVFVHKALDAAVSLASADEDARGKLFKSVGLDPSAPVDPGAMISDGDFFGLLERIAKLDDRGRFV
PVQMGASMCCDDYGAFGLAFKSAPDLLSSYARVERFGKVVTSIANFRVKQVGPSVFMEVVQGGDPRLGLR
MTNELALAATMSLSQEVSSEDFSPVAVHLMTERPEVDDVYHAHFRCPVHFGADHDALEVATTAAVRSNRL
SDNGMSRFFETHLDNQLSQISDRSELEQGILDQIGEALSEGVPTLAEIAGCMGMSSRTLQRRLSAEGLAY
QDLVSSARKSLSEQLLRRTDYALAEIAFLTGFSDQSTFTRAFKRWHQQTPANYRRGTPV
>gi|99078386|ref|YP_611644.1| NmrA-like [Ruegeria sp. TM1040]
MASKPILITGATGKTGSRVMGRLKSLGFDARSGSRKAPVPFDWDNPATWEKALRGIGAVYVNYHPDYAFP
GAIANLTRFTRVAASCGIERLVILTGRGEHHAQLGEAVVAKSGLDYTIVRSAWFAQNFSEGALWEPVMEG
VVPMPGANLAEPIIDIDDLADVIAVSLTGEGHSGQTYDCTGPRLLDFAEVADILSGAMGRRVNYLPISFD
DFHAELAATSGTVFADIVTGIARETFDGRNAVLGDGVMRALGRQPRDFTEFAQSAALAGKWANAAWEMKT
NRSTS
>gi|99078387|ref|YP_611645.1| hypothetical protein TM1040_3411 [Ruegeria sp. TM1040]
MKLNRFQQIILGISGVTACAIGTLIALAPHAFYASYGITLGQDPNLLNELRAPGAGLAVFGALMLAGMFR
AAMVPISLGVALTVYLAFPAGRIVGIVLDGMPAGSVIGALGFEILIAGLLLVAFRPMRKVDASAERFVDL
SR
>gi|99078388|ref|YP_611646.1| Na(+)-translocating NADH-quinone reductase subunit F [Ruegeria sp. TM1040]
MTTFGLGVLLFTLIVVALVTIILAARSKLVSSGNVNITINGEKTISVPAGGKLLQTLAAEKMFVPSACGG
GGTCAQCRVRVHSGGGSILPTEESHITKREASCGDRLSCQVAVKQDMDIEVPEEVFGVKKWECTVRSNEN
VATFIKNLVLELPEGEDVNFRAGGYIQIEAPAHKLSYKDFDVEEEYRPDWDKFNLWQYESTVTEPIERAY
SMANYPDEKGLIMLNVRVASPPPGSTGIPPGQMSSYIFNLKPGDKVTISGPFGEFFARDTQKEMVFIGGG
AGMAPMRSHIFDQLKRLENRDRKITFWYGARSKREMFFVEDFDQLAEEFDNFEWHVALSDALPEDDWKGY
TGFIHNVLYEEYLKNHPAPEDCEFYMCGPPIMNQSVINMLLELGVDREDIMLDDFGG
>gi|99078389|ref|YP_611647.1| Na(+)-translocating NADH-quinone reductase subunit E [Ruegeria sp. TM1040]
MEGLLSLAVKAIFVENLALSFFLGMCTFLAVSKKISTAIGLGVSVMLVQGITVPANNLILTYLLAPGALA
WAGFGDVDLTFLGLISYIGVIAAMVQILEMLLDKYFPPLYNALGVFLPLITVNCAILGGSLFMVERNYDF
AEAATYGLSSGFGWALAITAMAGVREKLKYSDIPDGLQGLGITFITAGLMALAFMSFSGVKL
>gi|99078390|ref|YP_611648.1| Na(+)-translocating NADH-quinone reductase subunit D [Ruegeria sp. TM1040]
MAQTYRSQLVDPLIDNNPITLQVLGICSALAVTSSMQVAFVMALAVTFVTGFSSMFISMLRNQIPSSIRI
IVQMVIIASLVILVDQLLKAYAYEISKTLSVFVGLIITNCIVMGRAEAFAMKNPPVASFIDGVGNGLGYG
LLLLIVAFFRELFGAGSLFGVTILETVNNGGWYVPNGMMLLPPSAFFVIGLLIWGIRTWKPAQVEEREYK
IQTVEAH
>gi|99078391|ref|YP_611649.1| Na(+)-translocating NADH-quinone reductase subunit C [Ruegeria sp. TM1040]
MSDANENKGLIRRFIDAPPDSVGKTIFVAVALCLVASMVVSAAAVALRPVQEENKLRDKRINVLQVAGVY
EEGVSVTEAFAAFEPHVLDLSTGAYTDQFDIETFDALAAAGDPAIVRALDEDPAGLGGSMQAYRMIYLLR
DEAGAIDKVILPIEGYGLWSTLYGFIALEENGNDIFGLQFYQHGETPGLGAEVDNPRWKALWNGKKLFAE
DGQLAITVAKAAPPEGKEYHVDALAGATLTSVGVDNLVKFWMGEAGYGGFLERLKAGEID
>gi|99078392|ref|YP_611650.1| Na(+)-translocating NADH-quinone reductase subunit B [Ruegeria sp. TM1040]
MGLRNFFDRIEPQFLKGGRYEKFFPVYEMVESFIYTPKTVTTVAPHARSYIDMKRIMTYVVIATIPCILF
GMYNTGLQTNMAIAEYGASGWRAAILETLGIGFDPNNPFANIMHGLLYFLPIYIVTLVAGGIFEVIFAVV
RGHEVNEGFLVTSMLYTLIVPATTPLWQVALGIIFGVVIGKEVFGGTGKNFLNPALVGRAFLYFAYPAYM
SGETVWTPVDGFSGATALAIGASEGHAALPERGIEWMDAFIGTIQGSFGETSTLAAMIGLAFLLIVKIAN
WRLVVGCLAGMIAFSTLLNWIGSDTNPMFAMPWYWHLVLGGYAFGLAFMVTEPVSASHTNMGRYIYGALI
GFMVVMIRVINPAFPEGMMLAILFGNVFAPLIDYFVVQANIKRRAKRNV
>gi|99078393|ref|YP_611651.1| Na(+)-translocating NADH-quinone reductase subunit A [Ruegeria sp. TM1040]
MQQHTLKKGLDVPVLGAPDTKIEDAAKVRTVAIIGQDYIGLKPRLSVQEGDVIAAGAPVLAHKDTPEVQV
TAPVSGRVKAINRGARRVLVSVEIEVDEAAAEPVDFSTIGDDSSAEGLRTRLCASGLWTSFRTRPYSKVP
APDTAPAAIYVTAMDSEPLSGDAATIINDQAEAFARGLQAVTLLTEGKTYLCQDSGATIPGADLASVTAV
GFAGPHPAGLAGTHMHFLEPPTAEKTVWTIGYHDVIAIGHLLLTGRINSERVIALSGPKCSRPRLVRTLN
GASMTDLCAEDLGGEDPIRVISGSILSGRAGEGTTAYLGRYARQITLIKEDREQIPMGWIRPMPSKYAVQ
PVLGSAFSKKLHALTSNLNGGRRAMVPIGTFEQLMPQDFLPTQLLRALLVMDTDQAQALGALELDEEDLG
LCGFACPAKYEYGLALRDSLSKIEREG
>gi|99078394|ref|YP_611652.1| ApbE-like lipoprotein [Ruegeria sp. TM1040]
MSNPLLLSRRSFMVMPLALMACKKGWSLLELSGLTMGTSYSIVAIDHSKSVEKAELQAAVDKALAQVNVQ
MSNWDAASEVSQFNALAAGESLSVSGELHHVMQAAQDVHFASDGAFDVTVGGLIDLWGFGAGQTRSDLPS
EAEIAAAMGCCGQAQSVELEAGGLKKLNAGAEVYLSSIGKGFGVDQLARVLKGYGITDYMVEIGGDLYTA
GRNPDGQPWQIGIETPEAFDRGVTQVVGLSDMGMATSGDYRNFFDVDGKRYSHIIDATTGRPVEHDTASV
TVLTDNAMLADAWATAMLVLGRERGLEIANQRDLAVLFLDRAVANGDNGFTSVASNRFEALTA
>gi|99078395|ref|YP_611653.1| hypothetical protein TM1040_3419 [Ruegeria sp. TM1040]
MSTFLLTFGLFLIVMVGMAFGVMFSGRTIKGSCGGLNAIADADKCLVCKKDIDPDSPLRERLACPRARKM
LEEMEREQG
>gi|99078396|ref|YP_611654.1| hydrophobe/amphiphile efflux-1 HAE1 [Ruegeria sp. TM1040]
MISEVFVRRPRLAMVISIVITIAGLIAMSAIPVAQYPEIAPPTVQVSASYSGADTATVEEAIAVPIESQV
NGVSGMRYMRSNSNNAGEYSLTVSFELGEDPDLATVNVQNRVKLAEPRLPQAVRDQGLQIKKASTDILQV
FTFHSDDPAHDQLFLANFVAINIIDELKRIDGVGDVFNYGVRDYAMRIWLDPQKMSDREMSVDDIVSAIR
SQHLQASAGRIGAAPLVEDGAGLQMTIVTKGKLTSADEFENIILRSETDGSFVRVKDVARVELGAATYDV
ETRFEGTPSAPIAVFLSPGANAVAVAETVRHKLEELQERFPDGVSYSFIYDTAEFVEAMIKKVEHTLIEA
FVLVGIVVFVFLGRLRPTLIPLIAVPVSIVGTFAVLLALGYSANTISLLAMILAIGIVVDDAIVVVENVE
KVMHEEPHLSPADATRKAMKEITGPIIAITLVLLSVFVPVAFLPGSSGVLFRQFAVTISAAMVISAINAL
TLSPALCAILMKPGEPIRFMRRVSDGIDAFSRGYGNLIRRLARLAVLSLALTALFGFATFRLGSITPSGF
LPAEDKGFILAVATLPPGASLDRTTAVLEAGDALIRQEEGVESIVTIAGFSLIDGGLASNAGIVFIRLAD
FADREDPAMHSTEIVRRITGRLQQIGGANFIALNPPALPGAGATGGFEMMLEALQGQSPREMAAVMNGVV
VSANQDPRLSAVYSTFEAATPQVRLDIDRDRLYTLGLTLPQVFSSLQGTLGGVYVNDITLFGKGFTVWVN
GDADYRGNIGAINNIRIRNASGEMVPVSSFATARLESGTRSQVRYNNYRAVAINGSPAAGVGDGDAITAM
EEIGAATIPDGFAYEWTGMASEVKSSAGQTGIVLGFALLFAYLFLVALYESWNVPVGVMLSVVAAVMVAI
FGVWVAGSSLDVYVQIGIVVLIALAAKNAILIVEFALLRLGEGKSIEDAAALGAQERFRPVMMTSFAFIA
GLVPLVTASGPGADSMFAVGVPVFAGMIGSAVIGVILIPLLFIVFEHMRSWSRRASPAADSQ
>gi|99078397|ref|YP_611655.1| secretion protein HlyD [Ruegeria sp. TM1040]
MASSIDRRTDQFCAWIRLNCLLICALTALPLSAAAQDQNAAPPPPAVTVAIIEERNFQEAETFSGRIEAI
QSVDLIARVQGYLSARHFEEGAFVEKGQPLYTLDQDIYRNTVHQAEAALAVAQATETLAQQKFDRQEELT
RRDVQSRALLEEAQANLAVSQANVAAAQSQVEAARINLAYTEISAPISGLIGRSAVATGDLISPQSGPMA
TLVQFDPIYASFPVPQRSMIDFRKRGARNEDVFVSLTLADGSVYPHHGVITFTDVSAASSSDAVIVRATV
PNPDNLLINNGLVDVHLVANADSRALALPAQALLLDQQGAYVLVVDGDDRVQAQRVEVGTQRAGYLEVKD
GLEAGARVIVEGIQKARPGNRVTVSLVNTDN
>gi|99078398|ref|YP_611656.1| WxcM-like [Ruegeria sp. TM1040]
MSISKCRIIDLPRIADARGNLTFIEGQNHIPFDIKRVYYLYDVPGGSDRGEHAHKNLHQFMVCMSGSFDV
CLDDGFESKRIQLNRSYFGIYICPMIWRYLDNFSSGAVCMVLASEPYDEADYIRDRDEYLRAVRAS
>gi|99078399|ref|YP_611657.1| DegT/DnrJ/EryC1/StrS aminotransferase [Ruegeria sp. TM1040]
MSVSFLDLSAAYAEVSAELEAAAQRAMRSGWYIGGPEVTAFETAFAKFCDAKDAIGVANGLEAIEIALHA
FEIGAGDEVIVPANTFIATWLAVARRGAVIVPVEPDPETYNITPEAVAEAITPRTRAVIPVHLYGQPADI
DGIMRVASERDLIVIEDAAQCHGARCHGARIGSVGHAATWSFYPSKNLGALGDGGAITTNHAEAAARMRL
LSNYGSSQKYIHDLPGTNSRLDPLQAAMLSVKLPLLDEWNRRRQAVAAEYLDALAETALVLPKIADWAEP
VWHLFVVRHPDRDDLMTALRERGVETLIHYPIPPHRQNAFKDLGFGEGAFPITEQMSQECFSLPMGPHLS
TDDTQRVIAALKELLA
>gi|99078400|ref|YP_611658.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MTSPSGEASACPRCSVICLTYNHAAYSAAAIASVAEQTYPNIEIIVVDDGSTDGNADIVEAALKSCGRPY
KFLRQENTGNIAMNMNRGIAAATGDYMSMFSLDDLLLPDCIATKMELLIADPKLVFVANTCNMEVDGAGR
VTDPLYKSGLYELEIATAEALLELEFEHIGLLYMQGVVISAHVVRAIKGYDEDLKGDDLIIRTKIFRHMQ
AHPELGFCLLHRPGVQYRKHSENIHRNSWRQVKLALEWRDRFFPDRSMPHLWRVWVVRALKTSIAEGDMD
TVTTMTSEHSEISEVYNGYRGSWKFWRNMAKNKIRQLFARA
>gi|99078401|ref|YP_611659.1| hypothetical protein TM1040_3425 [Ruegeria sp. TM1040]
MTDLTVKPYDASEADAWNAFVAASRNGTFLHDRRFMEYHADRFHDASLVVKRAGKVLALLPANRSETQVV
SHGGLTYGGVIVGNDMRTGLMLETMAAISAYLRQTGATQLIYKPTPHFYHSAPVEEDLYALSRLGGRLIQ
TDASAAIPLSRRPKESQSRRQAAKRAAKEGFVVSETQDWSAFWGILTDVLAERHEAAPTHSLAEIEQLAQ
SFPSRIRLFGAMQGNTMQAGVVSFDCGRCIHIQYIAGNPEGRAAGAIDAIILHLIQSVFADRDWFDFGIS
TTEGGAVLNPGLAQQKEMFGARCVIYQRYALDL
>gi|99078402|ref|YP_611660.1| hypothetical protein TM1040_3426 [Ruegeria sp. TM1040]
MAWHKLGRVYCADGFADWAQHSFMTPVPVQMSADVIRLYGGMRDDAGISRIGWVDLDAHNPLRVIAVCDA
PALDLGEPGMFDDNGVILGDVIRTSEAELRMYYVGFQLVEKAKFLAFTGVAISDASGTRFDRVFPTPVLD
RAPEALFINALHSIAQTETGFRAWISCGQRWQDINGRIYPQYNCWTVPSEDGLHFDMRDAVKIMDVNEAE
YRIGRPRANRLADGSFELRVTSDTFDKHYSSHLAHSKDGIVFQRSDEVELPRGAPGDWDAEMTCYPARID
TPTGRSYLFYNGNNMGETGVGVAEWQAEA
>gi|99078403|ref|YP_611661.1| hypothetical protein TM1040_3427 [Ruegeria sp. TM1040]
MTTPLLIVGAGEFADIAYEYFTYDSDYDVVGFAVEAAFREGDTHCGLPLIDLETVEDHFDPLEVKAHVAV
TNTQLNRVRERLVGVMREKGYGLANYISSHAFVWRTAELGENVFIFENNVVQHGVKIGDGVVLWSGNHIG
HQTEIGEFCFLSSHVVVSGYCKIGRRCFVGVNASFADNIEIGEDCFVGLATVVNKSFKEPGQLLTGHPAE
PSRVSTYRYFKLKN
>gi|99078404|ref|YP_611662.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MTIAFSPRDLTPLYASAVALLNAGNLAAAREQLLRSLHEEGETALSYHYLAQILERAGGPGTEVLAAQAN
ALKCAPNHPVFLAALGVRLVDAGRDQDALVLLRKALEIDPQNPLALPWVMRLNRRYLQWTSYEEEAAACE
MLLKSAHKVDPLLSLTFVDDPAQQLKIAARSAPDVAVQPLEPHAPHEKIRVGYFSADFSEHATMHLIEGL
IEAHDKGVFEFHVYDFKPDPTSRQHQIIRDFADCYHDVSALSAAETAALARQEQLDIAVDLKGITTDSRP
MIFALRVAPVQVSFLGFPGTTAIAEMDYMIADRITIPDGDERFYSEKILRLPGCYQPNTNSRILPEGAGG
RAAFGLPDDRFVFASFNHPHKVGPSEFATWMEILREVPQAVLLFYSGKADLGAALAERAQAHGVEPSRVL
ACGPLPQTAHLERIAQVDLCLDCFAYNAHTTASDAVWAGVPLLTLAGRQFAARVATSILSTAGVPELSTV
STKDYVAKAVHLATHPEDLLALRQKISAARHGSPLFDTKRWTRDYEALLQMCYQRHRAGEAPDHMSLSDG
>gi|99078405|ref|YP_611663.1| rhodanese-like protein [Ruegeria sp. TM1040]
MYTIAALYQFSRFPDPAALKPALLALCLEHDVKGSLLLAHEGINGTIAGPRAGIDAVLAHIKSLPGCADL
DWKEATADHPPFGKMKVRLKKEIVTMGQPDVDPRASVGHYVEPEDWNDLIRSDDVVVIDTRNDYEVAIGT
FEGAIDPKTESFREFPQWWEENKDRFHNKRVAMFCTGGIRCEKSTNFLLGQGVEDVYHLKGGILRYLEEV
PQDQSSWQGECFVFDNRVSVGHGLKEGPHELCHGCRRPILPEDKERPEFEAGVSCHNCINETSAQDKMRF
RERQKQIRLARERGDIQEA
>gi|99078406|ref|YP_611664.1| nicotinamidase [Ruegeria sp. TM1040]
MEAAVTQALLVIDVQNDFCPGGALAVTEGDEVVAPINAMMERFDTVILTQDWHPKGHSSFASSHPGHAPF
DTMEMYYGQQVMWPDHCVQGSQGAEFHPRLRTDGDMIIRKGFRPEVDSYSAFFENDQTTPTGLEGYLRTR
GISDLTLVGLATDFCVAFSALDARRLGFSVEVELAACRAIDLDGSLATQLENMRQKGVKIS
>gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MEQTQPDTDGPLSQHNARFSPRGLLIRYAVIRARMYYARMFAAAGLTSVLAVIFGPFWPLVFFVLYLITD
KAETTYLRGLPERLENGTSLAKAKRIIFVFSVLYAGSVCGFAAIPYVQMHTEAGAHEILAEPFFALCIVL
GPALSAALDLRYVPLAASVRLLMLSLLPFGLTAHILLQNQTHGADLQLMVAGLVAFFFTQIWFVVMVQKR
HRNSRRNLRSQALQRQALEDAYMRLFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWANDGFSRLTGYTF
DELVGQNPGKILNSENTDPAALRVIEAGREKGEPFRAELINRRKDGKEIWIETNQVPVFDDTGQIETYIA
VERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMAQMLQATDLSEDQRLYTDTI
LGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELSVEIDPDVPVWVTG
DDRRLRQILVNLLGNAVKFTTSGSIFIRLRGVVTGDQVALKIEVEDTGIGIPADKLEKIFERFSQADNAI
SRKYGGSGLGLSISRGLAQAMGGDIDVTSVEGEGACFTLMLDMGVADCPSIVADEAEDADSLPALDQLQG
LRLLVAEDNRVNRLLIRKFLDDAPLELRFATNGAEAQELAKRFRPQVILMDMSMPEVNGLEATRAIRSFD
ITQPYIAALTANVDETSRQACVDAGMDTFLSKPLSRKELLNLLLTFSERARASERG
>gi|99078408|ref|YP_611666.1| nicotinate phosphoribosyltransferase [Ruegeria sp. TM1040]
MDIATRVYNHKWKIDPIVRSLIDTDFYKLLMCQSVFRNKPDTQVTFSLINRSDKVPLARLIDEGELREQL
DHIRSLSLSRGESTWLRGNTFYGKRQMFRPDFMEWFENLRLPPYHLERKGDQYELTFEGSWPEVMLWEIP
ALAVLMELRSRAVLNDMGRFELQVLYARAMTKVWEKIEQLRQIDGLGIADFGTRRRHSFLWQDWCVQAMM
EGLGGSFTGTSNCLIAMRREVEAIGTNAHELPMVYSALAEDDAALARAPYDVLSDWHEEHEGNLRIILPD
TYGTKGFLENAPDWLAGWTGIRIDSGDPAAAAEIAIKWWQDRGEDPTEKRVIFSDGLDVGKIAELHRQFS
GRVKASFGWGTLLTNDFRGLVPDDGLAPFSVVCKAVSANGRPTVKLSDNPEKAMGPKDEIARYKRVFGVG
TQERIDVIV
>gi|99078409|ref|YP_611667.1| hypothetical protein TM1040_3433 [Ruegeria sp. TM1040]
MTVTLSLILPRERGRLATLLAPYFAETAPTAGIDPSERAGQLLHRKDVTAFWIHADASRVGFAIVLNLPD
DRREFSEFMILPQHRRKGLGMEAAALILNEFPGFWRMGISHHSKGAAAFWGTRLSLMPNIRGLRDGAPFT
PHQVKSFTFEITDPAPE
>gi|99078410|ref|YP_611668.1| ABC transporter related [Ruegeria sp. TM1040]
MSLLDISNLSLSIGALPILRNVTLSIAAGEILAVTGESGSGKSMTAFSVMRLLPQAAKIDGAIYLEDENL
CALSEDEMCQRRGRDIGMVFQEPMTALNPVMTIGAQVMETILLHTDTAEADAKAEAARVLTRVGLPPERF
PMDRYPHELSGGQRQRVVIAMAIALRPKLLIADEPTTALDVTTQAQILDLLRDLVREYGMGLLIITHDLA
VVADLADRIVVMRKGEVVERGPTLSVLTHQRHPYTRMLFEASAHKVALPAAPEAPAPLLEVRGAVRDYAT
PRKGWLGKPGTFRAVNDVSFTLHKGERLGLVGESGCGKSTLTRAILGLEGLQGGELLLNGQPLSQQRSAA
QRQAMQVVFQDPYGSFNPRHRVERLVTEPFHLSPDAATGQERRDLVGQVLEDVGLKASDANKYPHQFSGG
QRQRIAIARALITRPELIIFDEAVSALDVSVRARILDLIAELCEAYGLTYLFISHDLSVVREVCDRVLVM
QKGEIVEEGPVDDVFTAPQHSYTQKLLAAAPVLPDITPTEPVEAPA
>gi|99078411|ref|YP_611669.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MNRSLFLGGLLSGVMLLLAIVSFVWTPFDHAVMNIPEKLQTPNATHLLGTDHFGRDILSMVMVGARTSLA
VALLAVGIGIGLGVPLGLAAAATRGSWLDEIIMRGNDLVFAFPSLVIAILITAVFGPSAVNAIIAIGIFN
IPVFARVARGGSLSLWAREFIMAARVAGKSRARISAEHILPNIANLLIVQGTIQFSLGILAEAGLSYVGL
GAQPPTPSWGRMLAEAQTLVSLAPHLAIVPGCAIIVTVVGLNLLGDGLRDRFDPRLMEGRA
>gi|99078412|ref|YP_611670.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLHYLAKRLLSLALSLTIASMVIFAVIEVAPGDPASFMLGTGAQEETVAALRSELGLDQSKVSRYLDWVG
GMLTGDFGTSYTYRTPVAKMVAERLWVSLPLAIYALTLSTLIALPAGIYAASRRGKAGDMAVMGATQLGV
AVPNFWFAMLLVLVFAINLRWFSAGGFVGWDKGLWAGLHALTLPAIALALPQAAILARVMRSALLEVLGE
DFMRSARAKGLSQKQAIRRHGLRNALIPVLTIIGLQFSFLLAGAIIIEQVFYLPGLGRLVFQAISARDLI
VVESVVMLLVFAVILVNFLVDMAYAVVDPRLRRTS
>gi|99078413|ref|YP_611671.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MNFKKPILAAVSALALLAGPALAKDTVTYATQLEPPHLDPTGGAAQAIDTVVYLNIFEGLTRFTPDGAVV
PLLAKSWEISEDGRTYTFTLQEGVTFHDGSTLDAQDVKFSLDRARAEDSTNAQKALFADIADVTVSDAQT
VVVTLSEPNGNFLFNLAWGDAVIVAEESVETLKTAPVGTGPYRFGEWVQGDRVEMVRNPNYWGEIPELTG
ATIKFISDPTAAFAAMMAEDIDAFDNFPAPENMIQFEADPRFQVIVGSTEGETILSTNNAQAPFDNPKVR
QALAHAIDRQAIVDGAMFGYGTPIGTHFAPHNPAYVDLTGQSDFDPDKARALLAEAGLADGFTTTLHLPP
PAYARRGGEIVAAQLAQVGITAEIINVEWAQWLETVFKGKTYGLTIVSHTEPMDIGIYGRPDYYFQYDNP
EFQGVMSRLNATTDPDQRTALLQDAQRMIADDYVNGYLFQLAKLGVAKAGLEGIWANAPAAAIEIGALSW
AE
>gi|99078414|ref|YP_611672.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Ruegeria sp. TM1040]
MSASSQKTALTAEDIRAMKGRTPIVSLTAYTTPMAQLMDEHCDFVLVGDSVGMVLHGLPSTLGVTMEMMI
LHGAAVARGLKRAMMVIDMPFGSYEQSPAQAFANAARLMAETGAAAVKLEGGEEMADTIRFLVKRGIPVM
AHIGLTPQSINTLGGYKVQGRDDAAKPLIADARAVAEAGAFAVVLEKVPASLADQVTEIVDIPTIGIGAS
AGCDGQVLVVDDMLGFFGAFKPKFVKRYAELGPAAEEAIADYASEVRARRFPSAEHTFADHAPQKAPQQD
>gi|99078415|ref|YP_611673.1| pantoate--beta-alanine ligase [Ruegeria sp. TM1040]
MTPPILRRLDDLRALRRDWMKKGDTLGLVPTMGALHAGHLSLVEAAKAACDHVVVTIFVNPKQFNSPEDL
ANYPRTEHEDAQKLAPYGVDAIYVPDPDQIYPEGYATTVSLTGVTDVMEGPNRPGHFEGVATVVAKLFLQ
SGADRAFFGEKDYQQLMVVRRMARDLDIPIEVIGCPTVREASGLAMSSRNMRLSAAATKTAGQLNPLMEA
AATRLRAGEDYAPLEAEMRAQLSDLGFAEIEYIDLRCAQDLTSLDRLDRPARMFVAAWLDGVRLIDNIAV
>gi|99078416|ref|YP_611674.1| glycerol kinase [Ruegeria sp. TM1040]
MTYILAIDQGTTSTRAILFDGDMQVAAVAQEEFTQHYPNAGWVEHDPEDLWSTTLATCRKVMADKGISAS
DIAGIGITNQRETTVVWDKATGRAIHNAIVWQDRRTAEICEGLRDEGHEDMVRETTGLLLDPYFSGTKVK
WILDTVEGARARAEAGDLLFGTIDSFLIWRLTNGQSHVTDATNAARTLMYDIKSGSWSTEICAMLEVPQA
MLPDVLDSAADFGTTSPDHFGGAIPILGVAGDQQAATVGQTCFKPGMMKSTYGTGCFALLNTGDTPVLSK
NRMLTTIAYQLDGKPTYALEGSIFIAGAAVQWLRDGLGIIGKASESGVLADKADPTQDVILVPAFTGLGA
PYWEPDCRGGMFGLTRNSGPAEFARAALQSVAYQTRDLWEAMRADWEGEANVTLRVDGGMSASDWAMQSL
SDTLGAAVDRPVMQETTALGAAWLAGMKAGVYPDQEGFAATWALDREFKPKLDAARREEAYARWKRAVQA
VIGV
>gi|99078417|ref|YP_611675.1| hypothetical protein TM1040_3441 [Ruegeria sp. TM1040]
MTILIAGGGIAGLALGLTLHQIGVPFKVFEATRRLKPMGVGINLQPNAVRELFDLGLEAELDAIGVRTQQ
LGFYSKLGNTIWEEPRGLNAGYAWPQFSVHRGELQMLLYRSLLERAGPEVIETGARAQGWEDTAEGALLH
LSDGRSVAGRLVVAADGIHSALRACQYPDEGAPIWDGRILWRATTRAPVFKGEGAMAMIGHDHLRFVSYP
ISAPDADGLATLNWIAEKRFDPNQDFQREDWNRAVDINQFVGDFADWRFDWIDVPALIRGAEVVYEYPMV
DRDPLPQWSFGHRTLMGDAAHPTYPIGSNGASQAILDARNIGAQILAHGVTTEALQAYEAEMRPAATKIG
LANRSGNGPDAVLQRVEDLCGGAFEEIDAVIARADLAAHAAKYKAISGFSIEALNAQPPTIPAGAQV
>gi|99078418|ref|YP_611676.1| isopentenyl-diphosphate delta-isomerase [Ruegeria sp. TM1040]
MTERRPDLIPAWVDGTLTPVDKLRAHQEGMRHKAVSVFVVQGREILMQRRAMGKYHTPGLWANTCCTHPQ
WREASDRCAVRRLREELGLEGLHPEYRHTLEYRADVGGGLIEHEVVDVYLAHMLAPLGLAPNPAEVMETR
WVDYHDLLAEVERHPDRFTPWLKIYLADYADVIFGPELIVSAKP
>gi|99078419|ref|YP_611677.1| cytochrome c, class I [Ruegeria sp. TM1040]
MKSILSTAIVFALTLPVTAWAEGDPEAGQKAFNKCKSCHQIVSDTGETLSKGGRTGPNLWGIAGRQAGTV
EDFRYGDDLVAAGEAGLVWDAETFAAYTADPRGFLREFLEDNKAKSKMAFRLKTGGEDVYAYLAQFGPAP
AEAEAEASDNENASD
>gi|99078420|ref|YP_611678.1| hypothetical protein TM1040_3444 [Ruegeria sp. TM1040]
MVTRFKCARGILVLIAIFAGMKTGDIRKRLPFGEQCRDNVEHAGGYSRPPPPLWRRRHAYTQLLLDNLRI
SDPHRERIRTVSDPGMTERQTGASEVVLAPDFDILARIYLQ
>gi|99078421|ref|YP_611679.1| hypothetical protein TM1040_3445 [Ruegeria sp. TM1040]
MTEPLRPTGPLIRNLHSRRARQRLALAEAYSRTSILASLGRGLSDAVDFVRDPDDAFLVVLHNRLATASR
AAKRANWPGGRLYNRLVGEDPNYVELSGSHIAHVLQLLGRDCPEGLGPLQFYHLRVDVVKDAIDVLTASV
APAKSDE
>gi|99078422|ref|YP_611680.1| hypothetical protein TM1040_3446 [Ruegeria sp. TM1040]
MSALYIDADACPVKAEAERVATRHKWRMFVVSNGGLRPSQNPLVENVIVDAGADVADMWIAERCGPGDVV
VTGDIPLAAKCIEAGARVLRHNGERFTEANIGQQLAMRDLMADLRAANPLGMQGGGKGFSKADRSRFLDA
LEREIRAAKG
>gi|99078423|ref|YP_611681.1| soluble pyridine nucleotide transhydrogenase [Ruegeria sp. TM1040]
MTETTPQYDYDLIVIGSGPSGRTAAIQAAKLKRRVLVIDRKDRLGGVSVHTGTVPSKTLRETVLNLTGWR
ERSFYGRAYRVKDQIKAEDLKARLHMTLDHEVDVLEHQFNRNHVDMLAGMAHFTGPNEVEVEVEAGDTTR
VTGEKFLIATGTRTYRPDSVPFNGTTVVDGDEFLEMAEIPRSLIVVGAGVIGVEYATMFSALDVRVTLIE
PRDTFLDFIDRTLIQEFTHQIRENGVDLRLGSAIESIEDEGSHIEVTLENGRHVRGEMLLFAAGRMGNTD
RLNLKAVGLETDHRGRLEVERKTYQTKVSHIYATGDVIGHPSLASTSLQQGRVAACHAMDVPTVPESPWF
PYGIYSVPEMSTCGMSEEELKERGVPYEVGIARFRETSRGHIMGLEHGMLKMLFSLKTRRVLGVQIVGEG
ATELIHIAQAVLNLKGTVDYFVQNTFNYPTLAEAYKIAGLDAFNRMPIPDEYKDLRAPSKAKKAPAKKTE
TKSAAKDKAPE
>gi|99078424|ref|YP_611682.1| carboxylesterase [Ruegeria sp. TM1040]
MEPSLETVSENRAFGGVQGVYRHKSSSTNCEMTFGLFLPEEAKDGPVPVLWYLSGLTCTHENAMTKASAQ
AWCAEQGIAIVFPDTSPRGEGVANDEAYDLGQGAGFYVNATQDPWKPHFQMWDYVAEELPALLGANFNLD
MSRQAITGHSMGGHGALTLAMNLPGRFRSVSAFAPICNPTNSDWGRKQLLAYLGDDETAWAKHDATLLMR
EAGFDGPVLIDTGTADQFGDLLKTESMAEAIATRRQEATLRMQKGYDHSYFFVSTFMEEHVSFHADALYR
E
>gi|99078425|ref|YP_611683.1| protein of unknown function DUF861, cupin_3 [Ruegeria sp. TM1040]
MTHFERLTPAAATPEEERPAPEKLLAGDPVFTTWNVEEVDGLYCGIWQSTPGKWRISYDEWEYCRILEGR
SIITSEDGTEYPLSAGDSFILRPGFKGTWEVLETTRKDYVIRL
>gi|99078426|ref|YP_611684.1| auxin efflux carrier [Ruegeria sp. TM1040]
MAEIFFRTLPFFAIIGLGYWAGRTRFFTDEATAYLTKFVFFFPLSAMIFRFAANLSVTEIFDPNLILGYL
AGTLGVYLVATVVAVLRRQDMSTAAVEAQCAAIGNVGFLGIPMMVILFGEAAVGPMMLVLAVDLVVFSSL
IVVLINAHRGAGLSLGTFKLVGMGLLRNPMILSIVAGLAWSAGEVPIPAPMNDFLAILGGAATPGALFAI
GASLASKSAERVEVAGWLSFAKLVLHPLGVAAGVLWLMPVTPFSAAVAISAASLPVAGNVYMLAQHYGVA
PQRASAAILISTVVSIVTVPLVIAWVS
>gi|99078427|ref|YP_611685.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MTNQHASAVRRGRKFDQVLDGARKVFLTDGFEGASVDDIAREAGVSKATLYSYFPDKRLLFMEVAHSECA
RHATQQLDIPAGSSPRQVLTQVARHILRVILSDVGQKIYRICVAETERFPDLGREFFASGPKVERERFKE
YLQAATARGELRIEDFDLAAEQWAALLRMDLFPRMIFNLRDSVTDSEINRVAEGAVDMFLACYGVSQAGD
AASDRP
>gi|99078428|ref|YP_611686.1| ArsR family transcriptional regulator [Ruegeria sp. TM1040]
MVTPRFDIIGQAISDASRTRMLCELMEGRSFTNKELASAAGVTPQTATAHLRLLQDAGLVVAEKRGRCVF
HRLAGPEIAQALEQLAAIAPRDSLYRAQKRKAGGLAQVRSCYDHLAGPLAVAMTDALIARGHLREEGGGF
HPVAGEIWAALGVCLPEGSTRAPFARPCMDWTERRLHIAGGMGRQILTHALEAGWLRRPVNGAERARGLE
VTAPGQRALHTRLGIGADVAGLLC
>gi|99078429|ref|YP_611687.1| hypothetical protein TM1040_3453 [Ruegeria sp. TM1040]
MNQQNTGAFPSSPEQVVFHRRELSVIMSLYGRMVAAGEWRDYGLSHLREMAVFSVFRRTAENPLYRIEKR
PKLRNRQGQYSVVGMDGQILKRGNDLKTVLRVLERKLIRVVD
>gi|99078430|ref|YP_611688.1| NLP/P60 [Ruegeria sp. TM1040]
MTRARIDRPVVDLCAAPAGARDRQLLLGDTVEILATSDGWCHLRAEKDGYQGWVPGTALAEPLTPTHWVS
APATHAYTKADFKSPDLVSLSLGSQVVVSGSEGRFAQTDQGFVPLAHLMPLAQRASDPVAVAETLLGTPY
LWGGNSRFGIDCSGLVQLSCHACAIACPGDSGPQETALGQTLPDGTPYERGDLLFWKGHVGWVRDPLTLL
HANAFSMAVTLEPLQSAITRIAEQGDGPVTAHKRLT
>gi|99078431|ref|YP_611689.1| leucyl aminopeptidase [Ruegeria sp. TM1040]
MQPHFAVPNLAVPTFAAATDAALPLHIVTERTLDAWLAEQDGATAGWVRSMGFRASWGQVVVLPGPDGSL
RGALIGAGTPKSRQRQRFLLAAAAAKLPESTYSLASELPADLSLEVECFGWLMAQYAFDRYAKNTGAKAR
LVAPDGVDAARIEAMAAGETFTRTLINTPAEHMGPAELQGAVESLAEAHGAEVRSIVGADLLEQNFPLIH
TVGRAAERAPRLIDLRWGSEGPTLTLVGKGVCFDTGGLNLKPGASMALMKKDMGGAANVLGLAHMIMATG
LKLRLRVLIPAVENAISGPAFRPGDILTSRKGLTVEINNTDAEGRLVLADALAFAQEETPDLLISMATLT
GAARVAVGADIAPFFTDREGDAVTLSSTAQDAADPVWRLPFHDAYEAMIEPGIADLDNAPAGGFAGAITA
ALFLRRFADEARYMHFDVFGWSQSNQPARPKGGVGQGTRALYQALPELLGLS
>gi|99078432|ref|YP_611690.1| hypothetical protein TM1040_3456 [Ruegeria sp. TM1040]
MANILTVKHRENVHLDPKKLSELYSQLGETSAEDVVCRAIEELAVRLTHCERLWRQDDIDNLRKSARSLI
AISEQIGMMAMANIARDVTDAIDADDSPAVAATLFRLIRVGESSLTAVWEQHDLTV
>gi|99078433|ref|YP_611691.1| carbonate dehydratase [Ruegeria sp. TM1040]
MDYAKPLPHYLVTRYHGWKATSYEENQGWYRRLAKEGQRPRAMVISCCDSRVHVTSIFGADQGEFFIHRN
IANLVPPYAPDGDHHGTSATVEYAVTVLKVAHLIVLGHSQCGGVQGCIDMCKGHAPALEEKTSFVGRWMD
ILKPRFASVEDIADPDEQARQFERQAVVASLENLMTFPFIDNAVKAGELSLHGLWTDIGEGGLECYDPKS
NSFLQV
>gi|99078434|ref|YP_611692.1| hypothetical protein TM1040_3458 [Ruegeria sp. TM1040]
MTRADPFYDSLQKVQTFENLTGGTRFTPLPEEWYVGCCDIVDSTGLLARGQYKTVNMIGASAIAALMNAF
DHAPFPFVFGGDGTSFAVPPHLADRARQELAKLRAWVAQEFDVALRAALLPVADLRDAGRDVRVARFAAS
SHLDYAMFDGGGLAWLEEEMKAGRYEIPAADPVAPPDLEGLSCRWDNVPAVNGEILSLLVLPHANTDPAA
FDALVARILSEVSQTERAGHPLPAIGPKLRFPPPGLGIEARLLRGNAPAILRKLMLFFQSAFAGLIFLRG
RPAGSFDPIHYRSTIATNADFRKFDDGLKMTLDCDAKTRTTLERLLKQAQAEGVARYGLHVQAEALVTCI
VPSPLQDDHMHFVDGASGGYAQAAQMLKGAARD
>gi|99078435|ref|YP_611693.1| aspartate-semialdehyde dehydrogenase [Ruegeria sp. TM1040]
MGYRVVVAGATGNVGREMLNILAERQFPVDEIAVLASRRSLGTEVTFGDKTLKTQDLDTFDFTGWDMALF
AIGSDATKKYAPKAAAAGCVVIDNSSLYRYDPDIPLIVPEVNPEAVHGYSKKNIIANPNCSTAQMVVALK
PLHDRAKIKRVVVSTYQSVSGSGKDAIDELWDQTKAHYNPTDDYQRKVYPKDIAFNVIPHIDVFLDDGST
KEEWKMVAETKKIVDPSIKLTATCVRVPVFVGHSEAINIEFEDFLDEDEARDILREAPGIMVIDKREDGG
YVTPKECVGDFATFISRIRQDSTLDNGLNLWCVSDNLRKGAALNAVQIAELLGREVLKKG
>gi|99078436|ref|YP_611694.1| hypothetical protein TM1040_3460 [Ruegeria sp. TM1040]
MRFVLSSVLVGAAALLSTTALAETFTAASRVSAVTVYPSEALMTRTAEVTLPAGRHRIIITGMPFVDEVE
TLQVTHPGVRRVGLYLRESFPVLEETATPEQATAEARVAEIEDQIDALRQTAEEARLAAQGAEAAIAFLS
ALNRGEGAALPDPDQLRALVSTVREETSEARETILRAKAQERGFQRQMKDLEAELARAQAELRALSQQDE
EQMFLALDVEADEEVTVPLSLSYPNDAVSWGPSYAFNLQTGTSPEVTLRRDVMIQQATGEDWVDVALRVS
TSTPDQRINPHDLRPNRRWIEDEQQAKQRFTSESRVMSAAEPIVEAPIIVEDTGASFGVVASEAGVSYSF
DVPVSLRSGAELAYLTLPDVTFEAEVFAQAVPRRDPTAFRIARIVNTSGEELLASSTTRYFVDGDLVGSG
HFAGLTPDAELDLGFGPIDGLRLKRDLLDQSEGGRGVISRSNQRDMVAEIEVENLTGQDWPLRVLDLVPF
SDQEDLEITWSATPAPSEENVDKQRGILAWDLDVSAGKTRTISLKTRLSWPEGMVLR
>gi|99078437|ref|YP_611695.1| hypothetical protein TM1040_3461 [Ruegeria sp. TM1040]
MTYRDDKTDNEDLAYGQTPWGCASTRKRLDSESMMLLRANLSEPLNRADSWPTLRELLRGKGFDMKRREG
RLRLVDLQSRVEICTFGLLGHPRAELEKRFGAPMQAH
>gi|99078438|ref|YP_611696.1| amidohydrolase 3 [Ruegeria sp. TM1040]
MLGTHLKLGLMSLCAATVAMGAAAQDVADTIYTGGPVLTMDDSAPRAEALAVREGRIAAVGSTEAVMALR
GESTRVIDLEGATLLPGFVDAHGHVAAIGLQAMAANLLPAPDGRGNSIAELQDILRDFIDAQPERVERFG
AVIGFGYDDSQLSELAHPTRHDLDAVAADIPVYIVHQSGHLAVANTAALALAGITAESEEMPGGVIRREA
DGKTPDGVLEETPHFVALGRILGGLDAEGSIEMVRAGVDLVASYGYTTAQEGRASTGQVQMMQALAAQPD
GLKVDVVAYPDILIDRDFILEEQSFDYENGLRVGGAKLTIDGSPQGFTAWRDKPYYAPPPQMRSDYVGYP
AASPDQVFDAIDWAYENDVQILTHSNGEAASDLLLAATGAAAEKHGNDDRRSVLIHGQFLREDQVDRIKA
LDIFPSLFPMHTFYWGDWHRDRTVGPEAADNISPTGWVLKRGMRFSTHHDAPVAFPDSMRVLDATVTRRS
RSGDIIGAAHRVDPMTALKAMTIWPAWQHFEENTKGSLEVGKLADLVVLSADPTAIDPETIDQIRVLRTI
KEDEVVYDASERDEGSLLQWRPVPGRIDTGSEMLRRAALMREIPQDLSGVRRRVALRAGSGPTHGATCVS
GYLFATLTPGFERAKDRLIP
>gi|99078439|ref|YP_611697.1| 2-dehydro-3-deoxyglucarate aldolase [Ruegeria sp. TM1040]
MAAPINRFKEALKDGQRQIGCWCSFGEAVTTEVMGTAGFDWLVVDGEHAPNDIRSIRDQLVALATSPAEP
VVRVPIGEAWIIKQVLDAGAQTVLVPMVETAEQAAELVRACHYPPHGTRGVGAAGARATRFGTTPDYIAT
ADAQICVLLQVENRKGIENLDHILAVEGIDGIFIGPADLSTDMGHQGNSAHPEVRAVIADAISRIKAAGK
APGILGVTDEATQAYSDMGAQFLAVGLDVLVLAQGARTLAAKWR
>gi|99078440|ref|YP_611698.1| 2-oxo-hepta-3-ene-1,7-dioic acid hydratase [Ruegeria sp. TM1040]
MTPDQHAEAAAQLLRAEETRQQCGLLSLAYPGMTLEDAYAVQKALVTQKLAQGRRKIGWKIGLTSRAMQQ
ALNITTPDSGVLLDDMVFENASTVPEGRFIQPRVEAEIAFVMKAPLAGRDCTHDDILKATEYVAPSLEIL
DTRILRADPATGQARIITDTISDNAANAGIVMGKAKHAIDAFDLRRVGAILKRDGVVEETGLGAGVLDDP
VTSVLWLARRMADYGQQIEAGDIVLSGSFIRPVECPPGTQIHADFADFGSVEISFS
>gi|99078441|ref|YP_611699.1| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Ruegeria sp. TM1040]
MRFATYTAATETFYGVITDAGAIALSPEFPEWPTLREVIENKGLHTLAQAAKGRDVTHPLDQITYQIPVP
RPEKIICVGVNFPNRNAEYKDGQDAPPNMSLFPRFARSFTGANHPLIRPPESPQLDYEGEIAIVIGKGGR
RISEADAYDHIAAITLCNEGTIRDWVRHAKFNVTQGKNWDSSGAIGPWLVPFTAPAQLDDVRITTKVNGE
LRQDDRTSRMLFPIRRQIAYISTFTTLVPGDIIVTGTPTGAGARFDPPKFLKPGDVIEVEGEGIGILRNA
VEDEA
>gi|99078442|ref|YP_611700.1| aromatic-L-amino-acid decarboxylase [Ruegeria sp. TM1040]
MNWTDFASWGRKVADWAQDYHLTVGERPVRAQTKPGDMLTALPETPPEQGEGMETIFADFEEKVMPGITH
WQHPRFFAYFASNAAAPSVLAEFLTSAIAPQCMLWQTSPAATEMETRMMDWLRQSLGLPSEFRGVIQDSA
SSATLAAVLTMRERALNWQGNQQGLAGQPTLRIYCSSEVHTSVDRAIWVAGIGQANLVRVPIKGDWRGMD
PAALETAIQSDKAAGLQPAGVILCVGGTGTGATDPIADCIKVAQNHGLYTHVDAAWAGSAMICPEFRAYW
PGIEGADSIVFNPHKWLGAQFDCSAHFLKNADDLVRTLAISPEYLKTHGHDGIINYSEWSVPLGRRFRAL
KIWFLIRTYGLEGLRQRIRNHVAWSRQLHDALAQEPDFEIVTPPMWSLWTFRYAPDGATDLDALNLELVN
RINDDGRIYLTQTRVDGVLVIRFQAGAFETTEADIMLAHDVITEIARGLT
>gi|99078443|ref|YP_611701.1| 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD [Ruegeria sp. TM1040]
MPIPAANLYPPFNITRLSHVEYGVTDLAASRTFYVDILGLQVTHEDDSRIYLRAMEERGHHCIILRQSDH
AGVACLGFKLYDTPDLEKAAAFFEGKSLPVEWIERPFMGPSLRTRDPWGVPLEFYVKMDRLPPIHQQYRL
YNGVKPLRIDHFNMFSANVDAAVAFYGEMGFRVTEYTEDDDSGRVWAAWMHRKGGVHDVAFTNGTGPRLH
HTAFWVPTPLNIIDLLDLMSTTGYVANIERGPGRHGISNAFFLYVRDPDGHRIEIYCSDYQTCDADLEPI
KWSLTDPQRQTLWGAPAPRSWFEEGSLFDGAETRDSDLKAQPIIAP
>gi|99078444|ref|YP_611702.1| 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase [Ruegeria sp. TM1040]
MSDLAVNLDKLAGFLEEYRKSGITNLIGGEARPAASGQTFETTSPVDESVICSVARGGSEDIDAAAQAAK
AAFPAWRDLPATERKAILHRIADGIVERAEEIALCECWDTGQALRFMSKAALRGAENFRFFADRAPSARD
GQMLPSPTLMNVTTRVPIGPVGVITPWNTPFMLSTWKIAPALAAGCTVVHKPAEFSPLTARILAEIAHDA
GLPPGVWNLVNGLGEEAGKALTEHPDIKAIAFVGESKTGSMIMAQGAPTLKRVHFELGGKNPVVVFDDAD
LDRALDAAIFMIYSLNGERCTSSSRLLIQDSIAEAFEAKLLARVNSIKVGHPLDPQTEVGPLIHKTHFDK
VTSYFDIARHDGATVAAGGSRHGDTGWFVKPTLFTGATNQMTIAREEIFGPVLTAIRFTDEDEALNIAND
TQYGLTAYVWTNDVTRAMRFTNQLEAGMIWVNSENVRHLPTPFGGVKASGIGRDGGDWSFEFYMEQKHIG
FATGHHKIPRLGA
>gi|99078445|ref|YP_611703.1| 5-carboxymethyl-2-hydroxymuconate isomerase [Ruegeria sp. TM1040]
MPHITLDYAPRLAQFVDLPELCDTLRRAAINTGILPMAGVRVRAIAADHISIADGNPDHMYLDISVRLRG
GRSLEARKAATQEIFAAARAVLAPVMASHPIALSLEMRDIDPDLSPKCGSIRDHLSTGDPA
>gi|99078446|ref|YP_611704.1| MarR family transcriptional regulator [Ruegeria sp. TM1040]
MTHALPRTDRSLPIALLRARERVMGPVRQLLNGQDLTEQQWRVLRVVQESGPIDPTQIADQACLLLPSLT
RILQKLQEKGLIDRARDETDRRRQVITLTDAGMQVIEANIDDSLALIERTREKMGAEDYEALLDLLRKLN
GLDL
>gi|99078447|ref|YP_611705.1| hydroxypyruvate reductase [Ruegeria sp. TM1040]
MTQSMQDTALELFHCAIQRADPAAAVAAQLAAEPIAPLAPGGRRIVLAVGKAAVPMMRATLAALAEPPAA
ALVVTNPENLTDVPGAEVIAGSHPVPDQSSADAGARVLSLVQTLTAADQLIVLISGGGSALMVAPAPGLS
LADKATVNEMLLASGLEINRMNLIRQALSQLKGGGLCRAAAPAEVTALILSDVIGDDLRAIASGPTVAPL
GQKADARALLQAEGLWDALPAAVKTHLETPEDEREMPAAQNVLIGSNRFSLEAMRDHAKALGWHVPDLVD
DLTGDVAEAAQRILDTAQTPAPDRPTALLFGGETTVRLSGTGRGGRNQELALRIAQAAKSLAGDWVFLSG
GTDGRDGPTDAAGGLVTPDTWAEIARAGADPAALLANNDSYAALKAADALVTIGGTGTNVADVQILLRRP
>gi|99078448|ref|YP_611706.1| hypothetical protein TM1040_3472 [Ruegeria sp. TM1040]
MTKPTYYAPHGGLPPQTQLLTDRAMFTEAYAVIPKGTNSDIVTSLLPFWEKARFWVIARPLSGFAETFSH
YIAEVLPGGGSTRPETEAGVEAVLFVVEGQMELTLDGATHQMREGGYAFVPPASDWSLRNTSDAPVRFHW
IRKAYQAVEGLEAPDAFVTNEQEVTPTAMPGTDGKWATSRFVNPEDLRHDMHVTIVTFEPGAVIPFAETH
VMEHGLYVLEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGKFRYLLYKDVNRHMPLAPLR
>gi|99078449|ref|YP_611707.1| uracil-xanthine permease [Ruegeria sp. TM1040]
MSDTTIGTPEQLRDPDYMPPLGKAIPLGIQHVLAMFVSNVTPAIIVAGAAGFGFGSNSPDFPELLYLIQM
SMLFAGIATLMQTLTLGPVGAKLPIVQGTSFAFLPIMIPLVAGKGVDALAALFGGVLIGGLFHAALGLVI
GRIRFALPPLVTGLVVTMIGLALVKVGIQYAAGGVPAIGTPEYGSLLNWSAALVVIVVTLGLKFFTRGML
SVAAVLLGLIVGYIYALMVGMLSFDSIGASWSNAAAFALPQPFKYGFEFSFAAILGFCLMAFVSAVETVG
DVSGITKGGAGREATDKEIEGATFADGFGSALAGAFGAMPNTSFSQNVGLIAMTGVMSRHVVTCGAIFLI
ICGLIPKVGAVIRTVPIEVLGGGVIVMFGMVVAAGISILSDVDWNRRNMVIFAISLSVGLGLQLEPGALQ
HMPDTARILLTSGLLPAAVISIALNLILPEELADESTEEVSGGMSGHSKGSLGTSRDAQ
>gi|99078450|ref|YP_611708.1| ureidoglycolate hydrolase [Ruegeria sp. TM1040]
MSRTLTARPLTAEAFAPYGDLLMPKPEPDKIINQGKCGRHHDLAQLDFADGRAGISLFVSEARHLPYEVE
LVERHPEGSQAFVPLDGVPMIVIVAPDADGSPGQPEAFLSAPGQSINLHRGTWHGVLAPFQQPGQYIVID
RIGDGANLEEHWFQEPWIVTEISAPAEG
>gi|99078451|ref|YP_611709.1| polysaccharide deacetylase [Ruegeria sp. TM1040]
MTRYPRDMRGYGATPPHPAWPNGAKIAVQFVLNYEEGGENCTLHGDAASEAFLSDIPGAAQWPGQRHWNM
ESIYEYGARAGFWRLHRLFTGAGIPLTIYGVASALARSPEQLKAMKDADWEIASHGLKWVEHKDMAEDDE
RASIKEAIRLHTEVVGTRPRGWYTGRCSANTVRLVAEEGGFDYISDTYDDDLPYWLEVGARDQLIIPYTL
EANDMRFATAPGWVTGSDFGDYLTDAFDTLYSEGAAGAPKMMTIGLHCRLIGRPGKIAALKRFIDHIQSH
PGVWCPRRIDIAEHWATEHPHQRRQRPSQMDRDTFVGAYGSIFEHSPWIADRAFDLELGPAHDCAAGVHN
ALCRIFRSASEDERLGVLTAHPDLAGKLASAGRLTAESTSEQASAGLNLLTDAERETFTALNTAYVEKHG
FPFIIAVRDHDKASIMAAFKRRIDNDRAAEFDEACRQVERIAEFRLMDLLP
>gi|99078452|ref|YP_611710.1| transthyretin [Ruegeria sp. TM1040]
MSGYLTTHVLDTARGCPAEGIEIALYKVSAGAREKVAQTVTNSDGRTDSPILPAERFATGSYELVFFCGD
YLRATGQAGEDPLFLDEVPIRFGMSEAESHYHVPLLLSPYGYSTYRGS
>gi|99078453|ref|YP_611711.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MAYLNNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHLKVRLFQRTTRLLHPTEQGQLFYHGAV
KILEAVEEAEADISNVTQTPRGTLYVAAPLGLGQRLIAPAVPQFNAAYPLINIRLRLSDRKLDLAAEGLD
AAFFLGLPEDSNLKIRKITDCPRVLCAAPAYLKARGTPTSSAELKTDAHDCLNLRYPGAPEFQWPLHGPD
GLRRVAVTGPFESDHGDVLTQWALDGHGIILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMHRRHQ
DPKVRLFLDFMVDHILASLPSDAA
>gi|99078454|ref|YP_611712.1| hypothetical protein TM1040_3478 [Ruegeria sp. TM1040]
MQELVIMWDWLGFAVRWLHVITAIAWIGSSFYFVALDLGLRKVPHLPVGAHGEEWQVHGGGFYHIQKYLV
APANMPDHLIWFKWESYATWLSGAALLMIVYWAGGELYLIDANKADLALWQGILISGASLSVGWLVYDFL
CKSPLGEKPTMLMVLLFVLLVAMGYGYNQIFTGRAVMLHLGAFTATIMTANVFFIIMPNQRIVVKDLQEG
RTPDAKYGKIAKLRSTHNNYLTLPVIFLMLSNHYPLAFATEYNWLIAALVFLMGVTIRHYFNTRHAGAGN
PTWTWPVTILLFIAIMALSQAPLVQDTYEESEARTLTQTELAFAGSEHFEDVMNVVPGRCAMCHAREPYY
DGIRRAPKNVLLETPADVAKYARQIYLQAGATHAMPPANVTYMEEDERALIRQWYADGAAELPFYLAGN
>gi|99078455|ref|YP_611713.1| guanine deaminase [Ruegeria sp. TM1040]
MRCSQKGRDAGLRWALGLSPSLRKANLMSADAKILRGRTLTFHAEPNGPDDTAAYTCLEDGALLIRDGRI
AAHGAYAEVLRAAPEAEVVDHRPHLLMPGFIDLHLHFPQVQVVASWGEQLLDWLNTYTFPAEVQFADKTH
ADRMARAFFDLVLSHGTTTAVAFCSVHPASAEAYFAEAARRNMRMIGGKVMMDRNAPDGLRDTARQGYDE
TKALIERWHGKGRASYAISPRFAITSTPDQLEMAGALVAEHPDAYVQTHLSENRDEIDFTLSLYPDAPDY
LGIYERYGLVHDKTLLGHAIHLEPREIDLLAEVGGKPVFCPTSNLFLGSGLFDDGGLRAKGIQNGIATDI
GAGTSYSMLQTLNEGYKILQLQNQKLHPLNAFHWITRGNAEVLGQLQEIGTLDVGSEADIVVLDVAATPA
MALRAEAATSLSEELFILQMLGDDRAVVETYVAGEAMKPQS
>gi|99078456|ref|YP_611714.1| response regulator receiver protein [Ruegeria sp. TM1040]
MQELKRLQKDNDRLWREVSELALDTLILSESAIEELERCDRLPELILLDINMPRMNGFEFLEIVDEKLSQ
AQPPVKVALLTTSSNPADARKAESFASVGWFLSKPLGRDMLDQLVSEFS
>gi|99078457|ref|YP_611715.1| ABC transporter related [Ruegeria sp. TM1040]
MTGVTLTNAVKKYGEVQTIFDVNLEIEDGEFCVFVGPSGCGKSTLLRMVAGLEETTAGKIHIGSRDVTDL
DAAERGVAMVFQSYALYPHMTVEENMGFGLKMTGHPKAEIKEKVAEASRILQLDQYLKRKPKALSGGQRQ
RVAIGRAIVRGPEVFLFDEPLSNLDAELRVDMRVEIARLHKEIGATMIYVTHDQVEAMTLADKIVVLRAG
RVEQVGKPMELYNDPDNRFVAGFIGSPSMNFVEGEVRGGKVVVRAFGGREITTSVALPQDGAKVIVGLRP
QHIRLSADGPATLDLRERLGGVSYDHLICAEGAKLIVETREEDSLEEGDSVGFDFEDRDVFLFDAQSEER
LR
>gi|99078458|ref|YP_611716.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MATANAPQRSNDGTVGKALEVLDQVAEYGRPVRFGELLAASVHPKATLYRLVQTLTNQGMLSFDEAQQTY
APGLRLVRLAHAAWRQSSLAPVARPHLDALSAEVGETIHLAQLDQGQVLYVDKRNARTPIEMFSQAGKIG
PGYCTGVGKAMIAHLDESAREDAIRRQAFFQHTAHTLANEAGFRAELDDIRAQGIAFDREEHEPGIICIA
APILSSKDRVMGALSITSSTERQSLEGLTSLKPLLLKTANEIAEAAESWQFPT
>gi|99078459|ref|YP_611717.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MNLLKGTAAGLAMAVGLAASAQASELTGTLKIFSDMSNPAPRAVMEKMASDFDALHPNLKVELTVIDREA
YKTQIRNFLTANAPDVANWYAANRMRPYVSAGLFEDVSDLWAEPAIAENLASTKGAMTLDGKQWGVPYTY
YQWGVYYREDIYNELGLEEPSDWATFKSNCQKILDSGRKCFTIGSKFLWTAGGWFDYLNMRTNGYDFHMA
LTNGDVEWTDDRVKQTFANWRELIDMGAFIDNHQSYSWQEALPFMVNGEAAAYLMGNFSVAPLREAGLSD
EQLDFYQFPAINPDVELAEDAPTDTFHIPSGAQNKEAAREFLRYVVSADVQTAINAGDALGQLPVNASSS
VDDDEMLNQGFEMLSSNSPGGIAQFFDRDAPAEMASVAMEGFQEFMVFPDNLDDILNRLEKARQRIY
>gi|99078460|ref|YP_611718.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLFFLFYVIFPILQSFNLSFYRWDGLGEPVYVGVENYVELMDDRAFEVSMWNNLKWLLLYLLAIPAGLAI
ALFLNQNIVGIRLYKSLFFFPFVISQVVVGLVFSWFYDPTFGLLNQILGFFGFGTLNVLGDPSLVTYGII
FAGLWPQTAYCMILYLTGLNAVDPEQVEAARLDGAKGLKMLWYVIIPQLRPATFIAFVVTIIGALRSFDL
ISIMTNGGPFGSSRVLSFYMFEKALSEYGFRMGYGAAIAVVLFLIMLSFIAYFLWSMYQEEKGGR
>gi|99078461|ref|YP_611719.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MFPRPIEKSSPAWAATYQALVPMALVLWLLPLIAVAVFSIKPDVDFTTGNYWGWPSAFKGFENYGKVFFA
SDMPRYLLNSVLITVPTVIGAVALSCMTGFALGVYKFRGNLLLFFMFVAGNFVPFQILMVPVRDLTLDMG
LYNTKLGLVLFHVAFQTGFCTLFMRNFIRALPFELIEAARVEGVAEWRIFWFVVLPLMKPAIAALAVLIF
TFIWNDYFWAVVLTQGAESQPVTAGITSFNAQYRAAYHLMSAGSIVAALPPVAMFFLMQRHFIAGLTLGA
VK
>gi|99078462|ref|YP_611720.1| glycoside hydrolase, clan GH-D [Ruegeria sp. TM1040]
MSDGLQLWRIDAPGQTLVLSSDGGLPGALYWGPALQPETDLIALARAVEQEVTGGMIDRLPPLSLCPEAG
LSFEGQPGLVAYRDGAPLYPRFRLEDTNGAQFTCRDRALGLTLFFDFEVRGGTIAASTTLTSEQDIILHH
LAAPVLPGPQMGQEIVDVCGRWIGEFQLQRTPWRAGIHKREARTGRSGHEHPPLAYFPEAGATNTHGTVF
AMHYGWSGGHVMLAEELPSGRRQIQWGHATGTQGAGTKFRSAPLYLAVSQAGFNGCAVAFQRLLSDHVVV
WPKPETPRPVHYNCWEAVYFDHDFTVLSDIAERAAALGAERFVLDDGWFGRRDDDTTSLGDWQIDRRKWP
EGLGPLIDHVERLGMTFGLWVEPEMVNLDSDLARAHPDWVLGPVDQIEGRQQRVLDLSREDVREHLFQVL
SALLSENRIDYLKWDHNRLLPIADAAQTEGIYALLRDLRSAFPKVEIESCASGGGRIDAGILSLTQRVWL
SDSNDALERMRIQHDAALLLPLSVTGSHVGPRTCHTSGRTIDIHMRAWVAAQRHMGFEMDPRELTPTEIE
ALTRVTTWWKNNRNWRMQADILRLDAPDQSVIAEQQMAADASRFVVFAGKARSVHQILPRPLRLTELDPK
AQYRIDLVNREALHHLSRGRTALKDGPLTLSGEILMQQGLTLPWQFPETIWVIEGEKL
>gi|99078463|ref|YP_611721.1| dihydroxy-acid dehydratase [Ruegeria sp. TM1040]
MTKDRRSRAWYGKLDKDGFIHRSWMKNQGFPDHAFDGRPIVGICNTWSELTPCNSGLRDLAEGVKRGVWE
AGGFPVEFPVMSLGETQMKPTAMLFRNLLAMDVEESIRAYGIDGVVLLGGCDKTTPGQLMGAASVDLPAI
VVSSGPMLNGKYRGEDIGSGTDVWKFSEAVRAGEMTLKDFMNAESGMSRSKGVCMTMGTASTMASLVEAM
GMSLPTNAALPAVDARRMALAHLTGKRIVEMIDEDLKPSDVLTKEAFENAILANAAVGGSTNAVVHLLAL
AGRVGVDLDLRDFEIGSEIPLLVNCMPSGKYLMEDFCYAGGMPVVLKALHEKAHLRSTKTVLGGDITAYA
EGAECFNDDVIRSFEAPVKPAAGLRVLRGNLAPNGAIIKPSAASDHLLEHEGEAYVFESIEDMKANIDRE
DLPVTPDTILVLKGCGPKGYPGMPEVGNMPIPRKLVTQGVKDMIRVSDARMSGTAFGTVILHVSPEAQAG
GPLALVQTGDRIRVSAAGGVLELMISAEEMERRSKAWEPDAPHYTRGYAKLYVDHVLQADKGADLDFLVG
KDTRPVTRESH
>gi|99078464|ref|YP_611722.1| short-chain dehydrogenase/reductase SDR [Ruegeria sp. TM1040]
MDLNATFHDLEGASVFITGGGSGIGASLTEGFLRQGAKVAFVGRSDASAFVDRMAEETGSRPLFIQCDIT
DIVALKAAISQAAEAHGPIKVLVNNAANDQRHATLEVDEEFWDWSQSINLKAYFFACQAVLPGMQALGGG
AIVNFTSISYMMGNSGYPAYTTANSGINGMTRSLAREFGPDRIRVNALAPGWVLTDKQLDKWATPEALAA
HLERQCLKDHLAPQDIVESTLFLASNASRMISGQALVVDGGVVVSG
>gi|99078465|ref|YP_611723.1| 2-keto-3-deoxygalactonate kinase [Ruegeria sp. TM1040]
MTAPEQTSVDWVAADWGTSHLRLWPMGTDGVPLERIDSDQGMSRLTADDYEQVLLDLLAPYLAPETALDV
ICCGMVGSRQGWREAPYAASPCAPPSFDTATAVQTDDPRLRVHVLSGVKQLAPADVMRGEETQIAGVLVA
DPGFDGVVCLPGTHTKWVSLKDGAITGFSTFLSGELFQLISAQSVLRHTLAGAGWDQAAFETGCQQGAAR
PEFLANALFGLRAGALLEGLDPVAARARASGYLLGMEVEAMREDWQGRPVAMVGENEIAQAYATALRLQG
ASVEILDAQDITLAGLCAARAQMK
>gi|99078466|ref|YP_611724.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Ruegeria sp. TM1040]
MSRNIIAILRGLTPEEALPVTDALICAGITRIEVPLNSPDPYASIAAMVAYAADRAMIGAGTVLDQGAVS
NLHQIGAQMVVSPDCNPEVIKATKALGMHSFPGVFTPTEAFAALRAGADGLKFFPAFKLGTDGFKALKAV
LPPEVATYAVGGVGPENFAQWQAAGITGFGIGSNLYKPGMHVDEIAANAEAIVRAYDEVFA
>gi|99078467|ref|YP_611725.1| SMP-30/gluconolaconase/LRE-like region [Ruegeria sp. TM1040]
MTATVFCAETCTLGEGPLWHPERAQLFWFDILGKRMLAREGDDTRIWQFDECVSAAGWIDRDTLLMASET
GLWRFDLGTAERRLMCALEADQPETRSNDGRADPWGGFWIGTMGFEAQKGAGAIYRYWRGELRKLVSDVT
ISNAICFAPDRACAYYTDTDLGRIMRQPLAPEDGWPLGAPEVFLDLSAEPYGVDGAVVDRDGNLWNAQWG
AGRVACYSPTGALLQTVEVPTPQASCPAFGGADLSTLFITTAAEGVDTPPAGQTFTAPTNAVGQREHQVI
L
>gi|99078468|ref|YP_611726.1| Beta-galactosidase [Ruegeria sp. TM1040]
MKRTLGTCYYPEHWPEEIWAEDAARMKAAGLTWIRIGEFSWSKLEPTPGDLHWDWLDRAIETLGAQGLRV
VLGTPTATPPRWMAERHPDMFAVTAEGQPRGFGSRRHYCFSHKGYFAESQRITRLMAERYGANPHVAAWQ
TDNEYGCHDTVISYSDAAQTAFRAWLAEQFDGEIGALNAAWGNMFWSMEYRSFDEIGLPNLTVTEPNPAH
VLAFRRFSSDQVVAFNRAQVEIIKAHSTAPISHNYMGRITDFDHFKLGEDLEIATWDSYPLGFLEDRVGA
SPEEQRAYARQGDPDFQALHHDLYRAVGRGRWWVMEQQPGPVNWAPYNPAPLPGMVRLWTWEAFAHGAEA
VCYFRWRQAPFAQEQMHAGLLRPDSQDAPAMQEAMDVAAELGAAADVQPAQAPVAILFDYDADWAWSTQP
HGAGLSYFQLILEHYKALRRAGQTIDILPPETRDFTGYKMILAPGMMHLPEPLKEALARSEAEVLYGPRS
GARDGHFSIPTSPLPPALPGLDVTVARVESLRPDMPIALKGGGAVRGYLEELEGTAEVVFETSEGAAVAL
RAGRQTYCGGWLDAEGLDRLIATVAQAAGLELRQMPEGVRTRRTATEVFWFNHSAEPVETEVGLLPPAGV
KRIAL
>gi|99078469|ref|YP_611727.1| metallophosphoesterase [Ruegeria sp. TM1040]
MIKILHTADVHLDSPLRSLALRNAGLRETVAAASRAAFSQMIDRALSEEVAAILISGDLFDGRERTARTG
AFLLAELDRLAEAGIQVYYIKGNHDAENPITGTLDLPQHVHVFDARGGKHQLSEDVWIHGVSFAESHAPE
SLLPRFKAPVAGAVNIAMLHSSLAGAAGHDVYAPCSVSDLAAMGFDYWALGHIHKRQIHAEAPWVVMPGI
PQGRDIGEAGPKSATLLTIEQGQIALSEVPTSVVEFVETELDVTGAANDEALRATLKAHLSVLSAALVAP
TGVVRLTLKGAPARHWQILRDRDVWTEQVHVLAQTCGDLWIDKLIFDLAPEAAQDTSGASDELAATMATI
CGEPGFQEHARQYVETVLQDLPATLRERLIADEAARDALVARLTQAGADRVLAQMKGAES
>gi|99078470|ref|YP_611728.1| hypothetical protein TM1040_3494 [Ruegeria sp. TM1040]
MRLKRLSLDRFGHFTDQQFDFGSAHDGHDFHIIYGRNEAGKTTTMEAVLRLFYGFPTREAYAFRHPRNNL
QISATLDFNGELRQFTRLPTRSGALVDESGTPLPEAALSAHLAGLSEPDYRRLLCLDDETIERGGEEIAN
AQGDIGRLLFSAAAGVADLSQVLDGVRSRADEIWKKRARNTRMRELKRALEELDKEIKARDVSANAWKSL
KRDLTKAQQAEEDARTRRDDLNTTRARTEAERRAVPLLAELQELEQALAPFADFPAQLDFNPERLVELRS
DLGSATQNIARLSDELQTLEEEQAALVLDPALEALPAALEALEDLSARHRTAALDLDRRKAEQQEALETM
RQAARDLGLVAENADLAALVLSGADITALQDAREQLRAAITHEGLEAREVEDLEERLRVAQDAVHDCAPL
AAEAGQLQELLLNFDAERLATAHAAAAEAITAAQSRAARSLAALSVRHVTFDTLPHCPSSLRQAQEHADR
DAALVQDLRRATETRNQHKEDASARAAQAKALERAANVVSDSEAEALRTKRDALWAVHVDSLDAESAATF
HEALSRHDTAADARLTQSRELAQLREIAQSEAASKARAAEAATRITALEEQRDAIAAEVNAAATQLGLAP
LSPAEWRDWVERHETARADAEALRDTKDSHSATFARAQALMDALAERVPSLPADLDPALAQARRMAEAAR
QTSEARGAAEKLLRQVERDLNRRQDRHNAAQEAKKKAEDTWRALVQELLAGQVSPESLMASLEPLRVLRE
HDKTRSAAARRVRMMEADQALFAQEVNALAQLHGVGVSSDPGQTYGDLKSLAETARIARDKAARLERAIA
TATAERADNTARVEAIDQELRAIAASFPEPPPAQDIDTLRQCAAQAQKVIADRAARDRLRRQILSELDLS
DLESARAQLAETSVATLNARLESTLSDLTHAEDDLTQAIQQRVNAEHALAEINGDRTAAALVEQKATLEL
QLEEAALEHLELSLGHHLASDAIKRYRDSHRSGMLTATEQCFADLTQGAYPALSTQIYGDSEVLLAVDRT
GASKRADEMSKGTRFQLYLALRAAAHEQLVAQGTILPFFCDDIFETFDETRTSAACQVMEAIGTRGQAIY
LTHHRHVVEIAQSVCATPPIIHEL
>gi|99078471|ref|YP_611729.1| diaminopimelate decarboxylase [Ruegeria sp. TM1040]
MDHFLYRDGALYAEDVPVAEIAATVGTPFYVYSTATLLRHFRLFDEALEGTDHLVCYAMKAASNQAILKT
LAAAGAGMDVVSEGEYRRAKAAGVPGDKIVFSGVGKTAEEIRTALTGGIRQFNVESEPEMDVINAVALEL
GVTAPITVRVNPDVDAKTHAKIATGKSENKFGIPIAKARAVYAHAASLPGLEVIGIDVHIGSQLTDLEPF
RLAYQKVAELTQALRADGHDIRRLDLGGGLGIPYTRSNEAPPLPVEYGQMIKEELGHLGCEIEIEPGRLV
AGNAGLMVSKVIYIKEGEGRDFLILDGAMNDLIRPAMYEAHHDIIPVVEPTPGLEPQPYDIVGPVCESGD
TFAKQRLMPPLAAGDLVAFRSAGAYGAVMSSEYNSRPLIPEVLVHGDQFAVIRQRPTFDEMINRDTIPEW
L
>gi|99078472|ref|YP_611730.1| hypothetical protein TM1040_3496 [Ruegeria sp. TM1040]
MSEQKTPDGPDHHPVEAALRQLAPLRRALLLTRAGMVAERLWRSFWPLATVLLLAAGLVLLGIFDWVVLE
VAWGGAVLVVLGAVAATVWGVMLFRWPKPHEAVARLDETLPGRPIAAILDHQVSGAEDAASVALWQAHQA
RMAARAAEAEAPAPNLRIADRDPYALRYVALLVLVTGLLFGTAWRAGRVAELMPGGGNAGLNGPTWEGWV
EPPRYTGLPTLYLGDLTEDTLRIPQNSRVTLRFYGDVGDLTLAETVSGRTGELPSASAPEQNFTVTEAGD
LTIDGAGGRSWRVEVIRDAPPLVSLAGEPDLSADGTLTLPFNASDDYGVVGGTVTISLDGAALDRRYGLA
TAPDARDPITLPLPLSLTGDRRLFSEVLEEEFSAHPWANLPVIYSLRAEDAAGQQSVAATLHGPLTARRF
FDPMAAALVEQRRDLLWARANGPRVAKILRTLSHRPEELFSDMGNYLQLRTILKRLERYSAHGLSPVHQD
EIASALWALALQLEEGDVGDALERMRQAQERLSQAMRDGASDEEIARLMQELREATDDYMRQLSRQAQQQ
DGDQEGGESSDNAIQLSQQDLQAMMDRIQELMEQGRMAEAEQALREFQQMMENMQVTQGQPGQGDSPGQQ
AMDGLADTLREQQGLSDQAFRDLQEQFNPNAQRGESQGNEGRDGGLGRGQSHQGGGAGGQDDGPQGEGGQ
NEGREAEGGQSPSGGQGNGAGDLAQRQQALRDELQRQRDGLPLGGPEGEAARDSLDQAGRAMEGAEEALR
EGDYAEAIDRQSEAMEALRDGMRALGEAMAEQQQQGQQPGGQQGQSTRQGNALDPLGRDRGGQGSDFFSR
DSIGEGQAYRRAWDLLEEIRRRAGERERSESERNYLQRLLDRF
>gi|99078473|ref|YP_611731.1| Zinc finger/thioredoxin putative [Ruegeria sp. TM1040]
MRLICPNCGAQYEVPEDVIPQDGRDVQCSNCGDTWFQPSTQMMAEEAEARAATPPPATEAGSVDAAHTRE
DALQEPPQDAWPSAPEPEPAAAEEHWHEDPDAPAPGTPPAAPPEPEADPAPAKRRLDPEISRVLREEAMR
EEALRSGRDSLETQPELGLEDLPEDEAARRARQSEERVARMQGLDPAPQAHAAPLDRDRLDPQPGSRRGL
LPNIEDVATNAPGETKPATPPPADAPAPPARKRGFSRGFLLVILLMALAILVYSNAAMIAESLPQADPYL
SSYVAWVDQWRLWLDAQAQALAAE
>gi|99078474|ref|YP_611732.1| ABC transporter related [Ruegeria sp. TM1040]
MIELENVGYNYGGGELFSDLSVQLAPGSFHFLTGPSGAGKTTLLKLCYGALTPTAGRVRAFNMDVKGLDR
DQMAYLRRRVGVVHQDCRFLDHLPVVENIALPLTVSGRGLLEEQANLHELMNWVGLAERMDALPPELSGG
ERQRAALARAVILSPDVIIADEPTGNVDWEMSQRLLRLLVELNHMGKTILVATHDLPLIRAAKNQVQARV
LRISNRQLISAGADL
>gi|99078475|ref|YP_611733.1| hypothetical protein TM1040_3499 [Ruegeria sp. TM1040]
MNALRKLILGDAQADRVVPPSGFTAQLTLFVSGAMAFLCVFALALSLASGRVADRWSDELARAATLRINA
PAEQRVAQTEAALRILRQTPGVANARALTQDEQAALLQPWFGAGIPLDTLPVPQLIEVTEDTPGYDAQGL
RLRLQAEVPGAVLDDHARWRRPLVEAAIALRRLGVVSILLIGGAMAAMITLAANAALAANAQVIEVLRLV
GAQDSYIAQAFVRRFTLRALFGATVGVVLGMLGVFLMPEASEEGGFLTGLGFQGWRWLLPLAIPPLAALV
AFVATTRAARKRLGDLA
>gi|99078476|ref|YP_611734.1| phospholipid/glycerol acyltransferase [Ruegeria sp. TM1040]
MTLAFQYLRSLLYMIQIYVAMLVLGIAFAPYALLSKNGARQACKTYARWAIWSARWMVGIRCEVRGPVPQ
GEVLVAAKHQSFLDILVIFNALPQAKFIMKQELMWTPIIGIYAKRLGCIPVNRGKRGAAIARMIKDVARE
FSEPGQLVIYPQGTRVAPGAQKPYKVGSGVLYEELKQPCVPVATNVGLLWPRTGLLRKPGLGVVEFLDPI
APGQARDSFMAELEQRIEARSDALMAELGFEQDGRDRIH
>gi|99078477|ref|YP_611735.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Ruegeria sp. TM1040]
MDAIESIEDLEALYGTPGAPSLRKVARQMTPLYRKWIMASRLCMLATVGPEGTDDSPRGDDGPVVLELDP
GTLALPDWRGNNRIDSLRNIVRDGRVSLMFLVPGLNNVVRVNGSAIVTADPDLLQRFDKAGKLPRTVIVI
KINEIYSQCARALMRARTWTSGDESEGLPSMGDILAEQTAGEEGGRSYDEAWAPRAAKTMW
>gi|99078478|ref|YP_611736.1| hypothetical protein TM1040_3502 [Ruegeria sp. TM1040]
MAETGHRRISGACVLKKRLLFGIIVAGFAMGLGAASQIWPTHSRAERIAELFYGICLAPVLTGDSPDTLL
SGLFQKPDKSWIDTQSGSFLRLEDSRCTISTYAPYALSYEDAAELLELTRIIVSRDFPQLVFDPKAKMGD
EALSKGWFLGAPQSPERWGIFHVAYPDWGG
>gi|99078479|ref|YP_611737.1| ethyl tert-butyl ether degradation EthD [Ruegeria sp. TM1040]
MTLSLQVLYPASDEATFDYDYYVETHLPLIEEHWGDLIETVEASRGLAGGPDVPPPYLLIATITFPDQDA
LNTAMGEKGGVIIDDVANFTNIRPQILVGELLMS
>gi|99078480|ref|YP_611738.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
MASYDVIVIGAGPGGYVSAIRCAQLGLKTAIVEGRETLGGTCLNVGCIPSKALLHATHMLHEAEHNFGAM
GLKGKSPSVDWNQMKSYKDEVIGQNTGGVEFLMKKNKIDWIKGWASIPEAGKVKVGDDTHEAKNIIIASG
SVPSALPGVEVDNDKGLVVDSTGALELPKVPKKMVVIGAGVIGLELGSVYARLGAEVTVVEYMDAVCPGM
DKDVQRGFKRILEKQGLSFIMGAAVKGVETTKSKAKVSYEPKKGGDAEVIEADVVLVATGRKPYAEGLGL
DALGVKMTERGQIATDAQWATNVKGIYAIGDVIEGPMLAHKAEDEGMAVAEVIAGKHGHVNYGVIPGVVY
TTPEVATVGATEDALKAEGRKIKVGKFMFMGNARAKAVHQAEGGFVKLIADKETDRILGAAIIGPGAGDL
IHEICVAMEFGASAEDLALTCHAHPTYSEAVREAALACGDGAIHS
>gi|99078481|ref|YP_611739.1| hypothetical protein TM1040_3505 [Ruegeria sp. TM1040]
MSITRHILRLGLLGLGLGVAIFAYTKVMARTGSGTPPPMAEAHQQADEILVIKSTRALHLLRDGETIRSY
DISLGAAPEGHKQSEGDERTPEGRYEIDWRNPNSIAHLSLHISYPNAADQAAAKAAARDPGGNIMIHGLP
NGWGALGALHLMLDWTDGCIAVTNAEMREIWSLVPDGTPITIAEAL
>gi|99078482|ref|YP_611740.1| inner membrane protein [Ruegeria sp. TM1040]
MTPELTALTLAALLQVFQIALMAVPANLELKPGQTLGPRDRDRMGGDLQDMVSKRTARLFRAMNNHFEGL
ILFSIACVVVTLSGQSSLFTTVCAFAYLGSRVLYIPAYAFGWVPWRSLIWAVGYLATAAMLVAALI
>gi|99078483|ref|YP_611741.1| inner membrane protein [Ruegeria sp. TM1040]
MTPELSALAATVLIHVVTVIWSQRALEADIGRDGNVGTRENLDERLSERSNRLRRALANHTENIGPFIIA
VLLLTLTDNASSLTAICAWTYVAARALYVPAYAFAWVPWRSVIYVIGLLATLLMIGASFF
>gi|99078484|ref|YP_611742.1| hypothetical protein TM1040_3508 [Ruegeria sp. TM1040]
MTPPQPDIEIRAELVRLIEGLDYFRTWRIAQLEATLPAGETLDLDTVVVPGSFFLDLYDQQSRKSDRKQI
LKEVQNWYAHTANEFHSFMKSGEQEVVQDINAFLARFRADIGFDFFSESGLIRKTMNKAVKRGKLVNDAE
WYVLQEFVVDGTEGDFTREETTHIRHLISEYEGAQ
>gi|99078485|ref|YP_611743.1| hypothetical protein TM1040_3509 [Ruegeria sp. TM1040]
MQLQSGKPILLWLIIIGYAIFAISGLSRTADVLSMPMPEKRYPALLSNEIAYVLSLAGFFGSVVASAGVA
ISSFLRSRRAVAFTALFLASQLLVFLSVLEATAFGRTLLNFMFWTFFGYWGIVISVSTCAIVYLLKQKQG
NLLQ
>gi|99078486|ref|YP_611744.1| dihydrolipoamide succinyltransferase [Ruegeria sp. TM1040]
MTTEVRVPTLGESVTEATVATWFKKPGDTVAADEMLCELETDKVTVEVPAPAAGTLAEIVAKEGDTVGVD
ALLANITEGGAAAASAPAAKPAPAEAPASSGGDAVDVMVPTLGESVSEATVSTWFKKVGDSVAQDEMLCE
LETDKVSVEVPAPAAGVLAEITAPEGTTVDASAKLGVISGDGAAVAAAPAAAPAAAETPAAVSKDVANAP
SAEKAMAEAGLSASDVKGTGRDGRIMKEDVASAIAAAKSAPAPTAAPAAPRAPVSADDASREERVKMTRL
RQTIAKRLKDSQNTAAMLTTYNEVDMTEVMALRNEYKDLFLKKHGVKLGFMSFFTKACCHALKEVPEVNA
EIDGTDIVYKNFVHMGIAAGTPTGLVVPVIRDADAMSFADIEKAIAEKGARARDGKLSMAEMQGGTFTIS
NGGVYGSLMSSPILNPPQSGILGMHKIQDRPMAINGKVEIRPMMYLALSYDHRIVDGKGAVTFLVRVKEA
LEDPRRLLMDL
>gi|99078487|ref|YP_611745.1| 2-oxoglutarate dehydrogenase E1 component [Ruegeria sp. TM1040]
MTEQSPNDIFHASSFMQGHNAEYLEQLYAQYANDPNAVDAAWAEFFRAMGDADGDVKAEAAGPSWARNDW
PPAPADDLTAALTGEWPAPVEAKAAGKKIADKAKEKGVEVSDEAIQRAVLDSIRALMLIRAYRIRGHLAA
DLDPLGMRAATPHPELDPKSYGFDGADMDRPIFIDNVLGLEVATMRQIVDIVKRTYCGTFALQYMHISDP
EQSAWLKERIEGYDKEITFTREGRKAILNKMVEAEGFEKFLHVKYMGTKRFGLDGGESLIPAMEQIIKRG
GNLGVKDIVIGMPHRGRLSVLANVMQKPYRAIFNEFQGGSFKPEDVDGSGDVKYHLGASSDREFDGNSVH
LSLTANPSHLEAVNPVVLGKVRAKQDQLGDKDRTAVLPILLHGDAAFAGQGVVAECFALSGLRGHRTGGT
MHIVVNNQIGFTTAPHFSRSSPYPTDNALVVEAPIFHVNGDDPEAVVHAAKVATEFRQKFHKDVVIDIFC
YRRFGHNEGDEPMFTNPLMYKKIKGHKTTLSLYTERLVKDGLIPEGEIEDMKAAFQAHLNEEFEIGKTYK
PNKADWLDGRWSHLDSKDEDYQRGETAIKPETLEEVGKGLTTLPEGYPVHKTIGRFLDARKKMFESGEGF
DWATGEALAFGSLLTEGYPVRLAGQDSTRGTFSQRHSGIVNQDTEERYYPLNNIRAGQANYEVIDSALSE
YAVLGFEYGYSLAEPNALTLWEAQFGDFANGAQIMFDQFVSSGESKWLRMSGLVCLLPHGFEGQGPEHSS
ARLERFLQMCGQDNWIVANCTTPANYFHILRRQLHRTFRKPLILVTPKSLLRHKLAVSKAHEFTTGSSFH
RVLWDDAETGLSETKLVEDKKIKRVVLCSGKVYYDLLEERDARGIDDVYIMRIEQYYPFPAISLVKELER
FKGAEMVWCQEEPKNQGAWTFIEPNIEWVLTRIKAKNTRPIYVGRATSASPATGLASEHKAQQAALVNEA
LSI
>gi|99078488|ref|YP_611746.1| succinyl-CoA synthetase (ADP-forming) alpha subunit [Ruegeria sp. TM1040]
MAVLIDENTKVICQGLTGSQGTFHTEQAIAYGTKMVGGVTPGKGGQTHLDLPVFNSVHEAKHVTEANASV
IYVPPPFAADSILEAIDAEMELIVCITEGIPVLDMMKVQRALEGSKSRLIGPNCPGVITPDACKIGIMPG
HIHKRGSVGVVSRSGTLTYEAVKQTSDIGLGQSSAVGIGGDPIKGTEHIDVLDMFLDDDETQSIIMIGEI
GGSAEEEAAEFIAEQKKKGRWKPIAGFIAGRTAPPGRRMGHAGAIVAGGKGGAEDKIEAMKSAGIVVADS
PATLGEAVQKAIANG
>gi|99078489|ref|YP_611747.1| glycosyl transferase family protein [Ruegeria sp. TM1040]
MKLATYMISLDRAKGRHAAMQATLRDAGLDAEFVSAVDLAETSEEELLQQCKSFGPWGVFAHGNMACTLS
HAKVWEQFLASDADVALIFEDDVFISAELRQWTEDLSWWPQGCELVNLEFWRSETLKVMVGTSASQHLGR
QVAPMLSRNPGSAGYLVSRKGAEALLASRPFTMSIDQLLFNPLVSPLAVSLEPHQITPALVTQGNTPPEE
GTFLGHAQRKPKGALYRKQKRLRGMAELRALPLHLLRLISGRARLVRVLYADRALTDDSAARAAEAQTA
>gi|99078490|ref|YP_611748.1| succinyl-CoA synthetase subunit beta [Ruegeria sp. TM1040]
MNIHEYQAKALLRSYGAPVSDGRVVMKADEAKTAAGELDGPLWVVKAQIHAGGRGKGSFKEADAGEKGGV
RLTKSVEEAAEEAKKMLGRTLVTHQTGPAGKQVNRIYIEAGSGIQTELYLALLVDRVTSRVSFVCSTEGG
MDIEEVAAETPEKILSFSVDPATGYQAYHGRRVAFSLGLEGAQVKQCVKLMGQLYQAFIEKDMEMLEINP
LIVADNGDLKVLDAKVGFDGNAIYRHADIAALRDETEEDPKELEASKYDLNYIALDGEIGCMVNGAGLAM
ATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDKNVKGILVNIFGGIMRCDVIAEGVIAAVKEVG
LEVPLVVRLEGTNVEKGKEIIANSGLNVIAADDLSDGAEKIVKAVKG
>gi|99078491|ref|YP_611749.1| hypothetical protein TM1040_3515 [Ruegeria sp. TM1040]
MLRRVKSLPMTGGYSFDLSEKFHFPPAIRGGSRLGRAVCAWTTARPEIRSKPKKRKFWRKPLVLQASRVQ
DGLPTFVDFYLYNDKPKMRLIQRWNFTGLWRDPETTIHVPKSLIFPSKMLKCTVSSCAFPPRQKRFAPFF
MARPGGRQRAKEKDTR
>gi|99078492|ref|YP_611750.1| hypothetical protein TM1040_3516 [Ruegeria sp. TM1040]
MRPRQTKNREGEGFVFATTGLQYTNLARRAARSLKLAMPKAQIDLCTDQKIEDPIFDKIHPVTHRGPRPK
MEALLSSRFEKTIYLDADVVVVEDISDVFDLLDTHPIAAALGVSRSRTEMTSYRKDIPHAFPVLNSGVFA
IRRTPQTLAFWEDWDRNYARSKIGKDQPVLRATLYEHQLMPLVLPPEYNLLKQSLLDKWGRINGGIRCLH
VRALHDVAHPNTDEPIGLQEVVRPRHLQTMIKAREADRSLKGSSRIYDLPPARQRVKPNKTARIKL
>gi|99078493|ref|YP_611751.1| malate dehydrogenase [Ruegeria sp. TM1040]
MARPKIALIGAGQIGGTLAHLVALKELGDVVLFDIAEGTPEGKALDIAESGPSEGFDASLKGTQDYADIA
GADVCIVTAGVPRKPGMSRDDLLGINLKVMKSVGEGIRDNAPDAFVICITNPLDAMVWALREFSGLPHEK
VCGMAGVLDSARFRHFLAEEFNVSMKDVTAFVLGGHGDTMVPSVRYSTVAGIPLPDLIEMGWTTQDKMDA
IVQRTRDGGAEIVGLLKTGSAYYAPATSAIEMAEAYLKDQKRVLPCAAYVDGALGLNGMYVGVPTVIGAG
GIERVVDIKLNAEEQAMFDTSVNAVKGLVDACKGIDSSLA
>gi|99078494|ref|YP_611752.1| hypothetical protein TM1040_3518 [Ruegeria sp. TM1040]
MIFPPSRAESRASQFGFDSDRRARGRRPNRGSCGAVVIEERRGRHQSRGCVKGAGIAPLAVRASCSEVHR
SRFAQGRFKVSFMLRPRSCRLPSRHARRGSDRVGPVSRRLLRQWMCSTRQGAVCDHMTRSTVQWRHRFRS
HRPLSPAFIRALVIPGACFGVGHRRRIRDAPAGSPCSPIVTAR
>gi|99078495|ref|YP_611753.1| hypothetical protein TM1040_3519 [Ruegeria sp. TM1040]
MKKTLFTFAAGLALVLSSQMSAAQSQNCAPREMVVKRLAEKYGESRQSIGMGQQGMVMETFASAETGSWT
ITVTTPNGMTCLVASGQSYEVLAEALPAMDTDA
>gi|99078496|ref|YP_611754.1| Citryl-CoA lyase [Ruegeria sp. TM1040]
MDPRARPYRSVLYIPGSKPRALDKARTLPVDAIIFDLEDAVSVEEKENARTTLADALAAGGYGARMKIVR
INGLDTAWGHADAEAAARMGCDAILLPKVSSPADLDALAEITGDVPLWAMMETPRGMLNAAEIAAHPRLQ
GMVMGTNDLAKDMQTRFRADRLPLMSGLGLCVLAAKAEGKIIVDGVFNAFKDVEGLAAECAQGRDMGFDG
KTLIHPAQVDVTNEAFAPSAAEMDLARRQIAAFEEAEASGQGVAVVDGKIVENLHVVTAREILAKADAIA
AISG
>gi|99078497|ref|YP_611755.1| NnrU [Ruegeria sp. TM1040]
MALLILGIILWWGAHLFKRVAPAQRASLGDKGRGLVALVLLVSVVLMVLGYRGTEYIHVWAPAPFLVHVN
NTLMLFALYFTSPGPNKGALFHKMRHPMLTGFKIWAVAHLLVNGDLASVILFGGLLAWAVVEVITINKSE
PNWQPNPKGSLAKDAMFFVASIVLLGVIGYIHGLVGPSPFPG
>gi|99078498|ref|YP_611756.1| hypothetical protein TM1040_3522 [Ruegeria sp. TM1040]
MKLYRFLSEDDTSAFCHKVTDALNKGWELYGSPTQTFDPVKGIMRCGQSVVKEVDGTYTPDTKLGAH
>gi|99078499|ref|YP_611757.1| hypothetical protein TM1040_3523 [Ruegeria sp. TM1040]
MSKTNHGRFFEDYKLGEVIRHAVPRTVSGGERALYHALYPARHALYSSDEFARSVGLTHDNGAPLEDLAA
FHIVFGKTVPDISLNAVANLGYAEGRWLLPVYPGDTLRAESEVIGLKQNSNGKTGVVWVRTRGLNQRDDC
VLEYVRWVMVRKGNLDADAPETCVPELKPALAAEDLALPAGLDFTSYDFALAGEPHRWGDYAIGEQIDHV
DGVTVEEAEHMLATRLWQNTAKVHFDSTARPDGSRLIYGGHVISMARALSFNGLANAQMIVGLNGGAHAN
PCVSGTTIRAWSEVLDKAQTAAPGVGAIRLRLVATSGGAPFALKGADGKYVPEVLLDLDYWALMPL
>gi|99078500|ref|YP_611758.1| phosphoglycerate mutase [Ruegeria sp. TM1040]
MAQVLYLTHPEVGIDPAVAVPDWGLSAHGAARVADLAKRGAWNGWHVVTSAERKALETAWPLAAAAGSAV
EVRPDMHENDRSATGYLPGAEFEAVADAFFAYPEVSVRGWERAVDTQARIIREVQAVLAAQRGRDVIFCG
HGAVGTLLYCALAGEAISRRWDQTGGGHYFSFDLEHMTPMTHWQALETLWR
>gi|99078501|ref|YP_611759.1| succinate dehydrogenase subunit C [Ruegeria sp. TM1040]
MADVNRGKRPLSPHLTIYRPQLTSMSSIMVRITGIAALAVALLVVWWLLAAATSESAFAFIDGLLRSWLG
DIVMLLAAWAIFYHMLGRLRHVVWDFGYCLEVETSEKLGVGMFIGATVLTVLAALVV
>gi|99078502|ref|YP_611760.1| succinate dehydrogenase subunit D [Ruegeria sp. TM1040]
MNYLTDRKRAEGLGAGGAGTHHHWQMMVSSILLVVLVPAFVITFGLGLGGTYEEVLAYYGRPVPAIITGL
TLVVGIIHLMREAQVAVEDYMHGLAEKLTLIAVAALSYTMIAAGLFALVKLAL
>gi|99078503|ref|YP_611761.1| succinate dehydrogenase flavoprotein subunit [Ruegeria sp. TM1040]
MTAAYEYETHEYDVVVVGAGGAGLRATLGMAEQGLRTACVTKVFPTRSHTVAAQGGIAASLGNMGPDSWQ
WHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTTEFGEGPPVQRTC
AAADRTGHAILHTLYGQSLKNNAEFYIEYFAIDLIMSEDGQCQGVVCWKLDDGTMHVFNAKMVVLATGGY
GRAYFSATSAHTCTGDGGGMVARAGLPLQDMEFVQFHPTGIYGSGCLITEGARGEGGYLTNSEGERFMER
YAPNYKDLAPRDYVSRSMTMEIREGRGVGEHGDHIHLNLSHLPAEALAERLPGISESAKIFAGVDVTKEP
IPVLPTVHYNMGGIPTNYWGEVLNPTEDNPTGVVPGLMAVGEAGCASVHGANRLGSNSLIDLVVFGRASA
IRAGKVVDPEAPNPVLNQASIDKAFDRFDGLRNAKGGTPTAELRLEMQRTMQADAAVFRTDKTLKEGVEK
MEVIAAKLDDLHVTDTSLVWNSDLMETLELTNLMPNALATIVGAEARKESRGAHAHEDYAERDDENWRVH
TVARVEGNKTSLSYRPVIVDPLTNEDAGGISLKKIAPKARTF
>gi|99078504|ref|YP_611762.1| hypothetical protein TM1040_3528 [Ruegeria sp. TM1040]
MRRVWREIGEALSIPFVPVHNPQNWTRIPTKGRVIVANWGARFAPDLFDTPEARFLHVIRDPRDVLISGA
RYHEDAPGRSERFLHKARADLGGLTYQQHLRSLPSRDDKLRFEMGEMHQRTLTEMLDWPYGHPRAFDVTF
ETLMADTGCETFAAALEFFGFDAPEVEVAQKIFFKHALFGGFSDKNSDGTTDRRLNAHVAPGAKRGWRQV
FSAEIAEDYCARFGAALVRLGYETDARAWCDAIAPKTAIPEPAHMVQPPPLGLAMGGMA
>gi|99078505|ref|YP_611763.1| hypothetical protein TM1040_3529 [Ruegeria sp. TM1040]
MTSVAAFATSPNAWEALGIRPARALRMIGMRRSGNHAIANWLQRNAERAVFLNNCRPTRDPLLSHNGIEV
GGARFAGDPVEAAAEAGEGALLLVSYEDTIHQRFVTKDNLSGPYKSANFSAELLIYRSFLNWSASLLKKL
QRNESYRAADRMAVAARAVATYGDLLVEVLEAPQDGRVAICYDAWAQDELYRARLLSDLGLSLRDNSLGD
VQPYGGGSSFQDSATDPAELQPSARWREMARDPEYQALLQVAALDRAFMDRVDALFPADAALMARLPDLP
ALDVEADL
>gi|99078506|ref|YP_611764.1| succinate dehydrogenase iron-sulfur subunit [Ruegeria sp. TM1040]
MVEFALPKNSRITTGKTWPKPEGATNVRKFQIYRWNPDDGKNPSVDTYFLDMDKCGPMVLDALIKIKNEI
DPTLTFRRSCREGICGSCAMNIDGINTLACIYGLDEIKGDVKIYPLPHMPVVKDLIPDLTHFYAQHASIM
PWLETKTNRPAKEWKQSIEDRKKLDGLYECVMCASCSTSCPSYWWNGDRYLGPAALLHAYRWIIDSRDEA
TGERLDNLEDPFKLYRCHTIMNCAKTCPKGLNPAKAIAHIKKLMVERTV
>gi|99078507|ref|YP_611765.1| phytanoyl-CoA dioxygenase [Ruegeria sp. TM1040]
MKDTVDNTIAYYDPDNCDLGEFKALIGQATRSEQVPLAAAIEKNIPIYDMAKLRPALEDDRTRRGIMAEW
AQVLRSGAGVVALKGAYADTAVLDEATRIYEGIIAEEKQGTGGAGDHFAASGANDRIWNSLQKLCEASPD
AFLNYFANTSIAAVCEAWLGPNYQMTAQVNLVHPGGAAQQAHRDYHLGFQTSDVSASYPAHVHDVSPILT
LQGAVAHSDMPLESGPTKLLPFSQAYRPGYAAWRRDDFRALFEEHHVQLPLAKGDAVFFSPALFHAAGAN
TSHDIHRFANLLQVSSAFGRAMETVDRDRMCRLIFPYAFQAKQTNKLSVAELSAAIAATAEGYSFPTNLD
RDPPTNGLAPETQAAFFRRALVEGIEEHAFAERLDQMSSARMA
>gi|99078508|ref|YP_611766.1| LacI family transcription regulator [Ruegeria sp. TM1040]
MTHRFPIKEIARQAGLGTATVDRVLNDRAHVSPQTKLRVTAAIKELKAQEAQLAAHGRRLFFDFVVEAPS
RFSLEVKAAAEAVLPQIGTAVCRPRFLLQEIMEEDEVVGALKRIMKRGSQGVCLKARDTARIREAAKTLT
AAKIPVVTLVTDIGGTDRLAYVGLDNAGAGRTAAYLISRALGDVQGMVLATRSHERFLGEEEREFAFVET
LARERPGLQVFAVQGGSGVDFETSKLLTKSMVGIHHLRAVYSMGGGNLSILRTLEHKGLSPDVYVAHDLD
RENRELIQDRRIDFILHHDLQLDVRNTFNAFLSYHGLSSGLVGAPISTVQVLTPENIPR
>gi|99078509|ref|YP_611767.1| phage integrase [Ruegeria sp. TM1040]
MARALARPDKLYPSVEEAQAMVQSMPSLTLAQRRDRAIVACAFLTGLRAAALSSMRLKHIDCEAETAVQD
AREMRAKNGKSFTVRWFPVPSEISLVVVEWKRELESNGFGGEDALFPDSKYLSTPKTSPAPLPILETSGA
VNKAFRIASTGVGQSYSPHSARHCLKALGDQICTRSEERKAWSLNLGHESMVITEAHYGKMTEATRMQVL
AAIKQKDETSDDEKDLMLRYLLHALTPGSPEYRAARQLVRQREAALDDGVLE
>gi|99078510|ref|YP_611768.1| transposase IS3/IS911 [Ruegeria sp. TM1040]
MKASKFTDAQKAFIIKQAEDGTSVAEVCRKAGISTATFFNWKKKYAGLMPSEMKRLRELEQENARLKKIV
ADLALDKEMLQDVIKRKL
>gi|99078511|ref|YP_611769.1| integrase catalytic subunit [Ruegeria sp. TM1040]
MRADWQVSIRRACEVIRFDPRTYRYKSRRPGQAALEQRIREICQTRVRFGYRRVHVLLRREGWEINAKKT
YRIYKELGMQLRSKTPKRRVKAKLRDDRKEAVSPNDVWAMDFVHDQLATGWKLRVLTVVDTFSRYVPVLD
ARFTYRGEDVVATLEQVCKRTGYPATIRVDQGSEFISKDMDLWAYANDVTLDFSRPGKPTDNAFIEAFNG
RFRAECLNAHWFMSLEDAAEKLEAWRRDYNEERPHGAIGNKVPADLMKSVHDTSP
>gi|99078512|ref|YP_611770.1| type III restriction enzyme, res subunit [Ruegeria sp. TM1040]
MTQFVFLTADFPDLLAHAKKAESAALSDPRGACFWARLTLETAIKWIYRNDPSMRSPYQDTLAALIAEPS
LGQLTGPAIVTKARFIKDHGNRAAHDSGKPIKPQDAAAVVRELFHVCYWMARTYAKDAKPDSSLQFDASK
LEKTLTISASTVAQIQALKEKHDAHAKALKDAEAAALASEEGRKRLEAELAQVRAEIKEIRQANTAVQDD
HDYNEAATRDAFIDLLLNEAGWPLDQERDREFPVSGMPNDKGEGLVDYVLWGNDAKPLALVEAKRTMKDS
RIGQQQAKLYADCLETMYGRRPVIFTTNGYEHWLWDDQMYPPRRVSGFLKRDELVLLHQRRGTRKSLDGV
SVDQGIAGRFYQQRAIRRVGEAFERDRQRKALLVMATGSGKTRTVIALIDQLMRANWVRRVLFLADRVAL
VKQAHNAFKTHLPTAASANLLKNHDPARNDHSGARICLSTYPTMLGLIDDVKGGEKQFGPGHFDLIVIDE
AHRSVYRKYRAIFDYFDGLLVGLTATPREEIDRDTYSLFELERGIPTDSYDLEDAVADEYLVPPRSISVP
LKFQRDGIDYDSLSDEEKAEWDAIEWDDEGAVPDRVEAADLNRWLFNKDTVDKVLEHLMTNGIKVAGGDR
LGKTIIFAKNSDHAKFIVERFDANYPHYMGQFARLIDYSVTYAQSLIDDFSEAEEAPHIAVSVDMLDTGI
DVPEVVNLVFFKIVRSKTKFWQMVGRGTRTCEDLFGPGQDKQEFIIFDFCQNLEFFNENPKITDSPTARP
IGERLFVSRVELISALDEAGNESPLAADIKDRLHQEVLGMNLENFIVRQARRPVERFQSAEAWDTLDLDA
RLALIEEVAGLPTAFEDGRLAAKQFDLLVLNAQLLLLRGDAAFANLQRRIVSFASALESLSNVPAVTQEL
ELVLAIQTDEFWQDINVEILEDVRRRFRNLAELIQPKERKNVITDFEDSIGTSTTIDLPEVGSGVDKVRF
KTKTRKFIEAHSDHIALQKIRRGEQLTPADLQELERMLIDEGVADHDVLDGLQNEGGLGVFLRSLTGLDR
AAAKALFSDFAAANQLSANQTEFIDLIINSLCENGVLDPKTFYESPFTDLDDMGIMGVFSETQSAEIIRL
VRETNQTAAA
>gi|99078513|ref|YP_611771.1| protein of unknown function DUF1524 RloF [Ruegeria sp. TM1040]
MKATDANLLNFINSAPQFVIPIYQRTYSWTERECRQLWEDIRRAGRSGHIPVHFLGSVVYIEESLSNTSS
RAPLLVIDGQQRLTSVTLLLSALSRKVADEEPVDGFSFKKIRNRYLMDPDESGERAFKLLLSKTDRTTLN
AVVSGDDLPEPQSMRVAENFKMFSRWLDQDDTAVSEVCSGLAKLMIVDVALSREHDNPQLIFESMNSTGK
ELSQADLIRNFVLMGLEPKLQTRLYEQYWRRMEEGFGQAAYASHFDGFMRNYLTVVTGSIPRLDDVYDAY
KAYSQEQIGGGREVEDLVREVWEFSQYYGALVLGQEKDKALALGFRDLRELKVDVAYPFLLEVYKDYKTG
ALSADDFLEVVRLVEAYVFRRAICSVPTNSLNKTFATFGRELKKDRYLESVKAHMLNMKSYRRFPRDEEF
VARIQDRDLYNFRSRTYWLRKFENFGRKERVEVDDYTIEHILPQNEKLSTEWQAALGSDWAAVQEKWLHT
LGNLTLTGYNSEYSDKSFAEKRDMAGGFKESPLRVNNGLGSLDAWNEAAIKSRAQRLAQQAAEVWAAPSL
SAEILATYRTPTEMANGYTIEDHPHLTSGKMRDLFEQFRREVMALDPSVSEQFLKIYVAYKAETNFADVV
PQAKALRISINIEPYELHDPRGMAVDVTDVGRWGNGNTEVKLTDHEDLPYVLGLVRQALDRQLGADEPA
>gi|99078514|ref|YP_611772.1| hypothetical protein TM1040_3539 [Ruegeria sp. TM1040]
MRGEFLGVQSEIIAELFQPLGDGDELDQGFYMDLFRDSIPSPVEPRDPEPSDLDENGEIYLPGDIEADAA
YRAAFERFQDRLEAYANASSDEGKAWIYFAEFFADQDTTEAQIVRALENAFDVFQEYGGDELSNEYFLTV
QRFLEKYSLRYDLRRPFSLHPTLPGIFSKLIRELKAAAIADEALAGLMNDFEDSVRDLRDNKSDRRMRQC
IEAQFKLIEAFAQRYPGINPDSLGQMCHHLPTWPHQTVRAAIGNLYGFASNYPGIRHAGNPASKIRDIEM
RDLVSMSIVLAGFTPYLTDLIDTDRIYSD
>gi|99078515|ref|YP_611773.1| restriction modification system DNA specificity subunit [Ruegeria sp. TM1040]
MSSVALGELVEIRGGGTPDKKVPDYWDGDIPWASVKDFKSTSLASTIDRITQAGVANSATQVIPAGNIIV
PTRMAVGKAAINEIDLAINQDLKALIPSQRIDRQYLLHALLANAKTLEDQATGATVKGIKLDALRSLQIP
LPPLQEQRRIAGILDQADALRRFRTRALDKLGTLGQAIFHEMFGASSPDHAAWEKINLSELVLPDDRINY
GVVQPGPHDPEGVPIIRVADLASPVVAFDSIKRIAPSIDAEYGRSRLKGGEVLIGCVGSIGTTIIAPPEF
AGANVARAVARVPLDTSRCEPRFVAEQLRSQRIQNYFTKEVRLVAQPTLNIKQIRETEIILPPKELQVSF
VERVHEIEAQKAQHAAALTACDVLFASLQSTAFRGEV
>gi|99078516|ref|YP_611774.1| N-6 DNA methylase [Ruegeria sp. TM1040]
MLPSHIRAQIDQIWNAFWSGGVSNPLSVIEQITYLLFIKRLDEIHTREEAKANMLGSEMERRIFPEGTFT
YKVSDDPKDDETIERPYDDLRWQRLINFENREKMKLMDQHVFPFMRTMAEEGTAFATHMKDARLGFSSPA
LLDKVMRLLDVIQMDDRDTKGDVYEYMLGKIASAGQNGQFRTPRHIIELMVRLMAPTPKDTICDPAAGTC
GFLVTAGEFLRETHPEMLRNPEQRQHFHNSMFHGFDFDPTMLRIGSMNMVLHGVENADVAYRDSLAEEHG
ADTGTYSLILANPPFAGSLDYDATAKDLQKVVKTKKTELLFLALFLRLMRTGGRAAVVVPEGVLFGSSKA
HKDIRRIIVEDQKLDAIIKLPSGVFRPYAGVSTAIMIFTKTESGGTDNVWFYDMEADGLSLDDKRTDLLP
SEKLGPVPAEALTEEEHAKNNLPDILARWGALEVEGERPRTAQSFMVPLAVIQATGTWDLSLNRYKEVAH
KEVDHQPPKEIIAELRAIEAEIADGLDRLEEMLG
>gi|99078517|ref|YP_611775.1| phage integrase [Ruegeria sp. TM1040]
MNDRINHDWQLYAGRYDEKTMDAHLTSTRDFEDFIEGRCFSQVRDKDVGKYRTSLLAKGEMPQEDGGLSA
STIRHRASHLAAFVKWLTKQEGYRRLGVTLPDYFDLPRQKMARALARPDKLYPSVEEAQAMVQSMPSLTL
AQRRDRAIVACAFLTGLRAAALSSMRLKHIDCEAETAVQDAREMRAKNGKSFTVRWFPVPSEISLVVVEW
KRELESNGFGGEDALFPDSKYLSTPKTSPAPLPILETSGAVNKAFRIASTGVGQSYSPHSARHCLKALGD
QICTRSEERKAWSLNLGHESMVITEAHYGKMTEATRMQVLAAIKQKDETSDDEKDLMLRYLLHALTPGSP
EYRAARQLVRQREAALDDGVLE
>gi|99078518|ref|YP_611776.1| putative transcriptional regulator [Ruegeria sp. TM1040]
MMSNADEMHPESTPDLFESLEAGSPPHQPPHPTEAKQKPAKRIRREANQKAAVKQPVSGGSASTAYLTDE
DVARRFRVSRQTIWRWIGTSHFPAPFKLSAGTSRWRLEEILTFERKLPRYAPEDGAKNPERKRT
>gi|99078519|ref|YP_611777.1| BRO-like [Ruegeria sp. TM1040]
MSQNKTIFSNLLGDLSVISIGDQAWFLADEVYAALGLFLRNDPQTLVLQQSEWSVMSSQSGVTNAQTPVV
ISEAGVYKLAFLSEEPEVREFQDWAMNTLLPTIIHDGFYMMGEEEMFSTPECDVTQTLIQSASLKASHEA
DLELLCSVILPELRADGAFFRDLPSYVEQPVENRELRVRQAVSLKQKRRLP
>gi|99078520|ref|YP_611778.1| hypothetical protein TM1040_3547 [Ruegeria sp. TM1040]
MEFTSFTEYAYGQTQYIPRQLELPLMPATDASTEVVQTSISPKGSCTSSTTSSLSNQVLADLKGTLQARG
MTTTEPQLEALADVVGTLCDMADGSCAPTIQLSSLDPGMGKTTALIHFLRRVVASPDHLDVGVLVCLSQL
DEIQRLVDEAELDEADFAVFCSDDQVSNLSATDIDAAQVLFTTQQMLAKRCAGRRLSEVREFYYLSQARA
VRVWDETIEPGKVITVSADELAAMLSPLRRINPVLADQVQALQFDLATSPPGQIFQMPALEALFAISTFE
ISAAKDFREQLDKLKALAGRAARIYRTYGNQAIALNIRDALPADIAPLLVLDASGRVRHTYSAWETHRGG
LVRLSSAPKDYAPLQIHLMDQGGGKDGWRRNGDQLAREVATIIDTKPDDPWLIVHHKAQAGIDPVGLIQR
YVERADLSQVNFLHWGTHQATNAFKDVPNVVLAGLLHLPDSQLLGLACASSGRSVADHPPAELIKQIELG
ELGHGVIQAVGRGSVRGFDAGKCLPCSAYIIAGRRYGLSEALPQWFPGCQLTSWRPRHKPLSGRVKQAVE
FVKRQQSERCGEPIMFSAIMDHIGEKDRSNFNRSIRKHRDFKAAIESLGLMDVNVSGGRGYDALQAVFEP
VVCAAA
>gi|99078521|ref|YP_611779.1| hypothetical protein TM1040_3548 [Ruegeria sp. TM1040]
MVRLVLTYGDERIPYDVSQDERRTSKVAIHVDPDGSVSVEAPPGFSECRIAEAVQRRARWVIKHVQEARE
RHKHRMPKEYVSGEQVLYLGRRYVLKVIPVDGPPKPASLVGSRLQVETQRQTSEDIRARVRAWYKVRGRD
YLARRLEQVSKSLPWVRQVPALRLLEMKRQWGSCSPSGEIIVNTHLVKAPRPCIDYVLIHELAHLKHHDH
GPEFWSLLDNHAVGWRKDKAQLDNLVEILTAD
>gi|99078522|ref|YP_611780.1| HsdR family type I site-specific deoxyribonuclease [Ruegeria sp. TM1040]
MSQQIPDTREEAASKLPALHMLIAMGWTYLSPASALGLRGSTRAVLLEPVLRQYLKAHRFAFKGQRYPLS
DAGIAQVLKEITVTGLSEGLRYANEATYKKLTLGVTVTEFVDGQKTSVTVPLINWNTPQDNSFYVSEEFS
VQRAQGNDHYRPDLVCFVNGIPLAVIEAKRPTHATKETAMVEEGISQHNRNQKEGGIPALYVYSQLLLSI
SGSGGRYGTTGTDKKFWSTWHEEEIAEADMQALKSKPLTATQIDALFADRPAWARNEFEELHSGKLMLTE
QDRLIVSLLRPDRLLDLTRRFIFFDSKIGKIVARYQQVQGTKAILAQVANKSEDGSRKGGVIWHTTGSGK
SNLMVFLAKALLTDPELADCRLIIVTDRVDLEKQLARTFLTGGAFGSVVATKKDGENAKVQSGEDLAQRI
GHGNERIIFTLLQKFNSATKYPECKNTSDKLIVLVDEGHRSQGGENHERMRQALPNAAFIAFTGTPLLKK
DKTRNKFGPILHAYTMSDAIADGAVTPLVYEERKPLLDVNDAAIDAWFDTFTQSMTDKQKSDLKKKYSSR
GQIYGAEDRIDRIALDIATHFNEHFKQHCPGLKAQLATDSKLSAIRYKEALDATGLVSSAVVISPPDTRE
GHDDTDDRKTPEVQAWWEKTVGKDAEAYETAVISDFGTDGDPDILIVVDKLLTGFDEPRNAVLYIDKLIK
GHNLLQAIARVNRLHEDKQFGYLIDYRGILAELDTSIKDYQNLAAKTQAGYDIDDLKGTFEEVSVEYKRL
PSRHDRLWSLFAEVENKKDREQFRRVLVPRMEDDGTGHSIDLSQKIREDFYEALTEFGMCLKLALASRSF
YEDSSFDEAVIATYKRDLKFFTEIRTQARQDAGETVDFSQYEQQIRQLVDKHVIGQDIVEPEGFIRVVDL
GQAGSPEDWSDEKTRTEADVIKTRIRKTIEQELIDDPYAQKVFSDLLKDAIKAAEAMFDHPHKQYVMFKD
LEQQVSNRATPGLPDSFSGNYRAQAFYGALLEAKGLGTDQLLDQEMLVQEAFHIDQVVSEAVQAHSINPA
NIEAAISKSLLPRYFQKFGGLDQAEMLVGQLVAIVRSGGNRA
>gi|99078523|ref|YP_611781.1| restriction modification system DNA specificity subunit [Ruegeria sp. TM1040]
MNAVSKASAFPATVQPGIPKLGKTPEGWLRAPLSRFLVEVRRPIKMADNEAYRLVTVKRARGGVVERGTL
DGREISVKSQFIVEGGDFLISKRQIVHGACGLVPQELAGSVVSNEYSVLNSNGNIDLQFLNYLAHTVFFQ
QTCFHSSIGVHVEKMIFKLDRWLKWEFDLPPLSEQRKIVEILSTWDRAIEVAEAQLANARKQKRALMQSL
LTGKRRFPEFEGQEWREVWLADLVSAIRGGGTPDKSNTAYWGGEIPWVSVKDLKSDVLQQTKDTITQSGL
NSSAANYFPKGTIVVATRMAVGAAVQLGKGMAINQDLKAIIPGPDVRNDYLFHFMQMVQPKLEALGTGST
VKGITLGDLHRLVIGLPATLEEQDKIVQMLDVARKDISSMCVNIGKLRAEKKALMQQLLTGKRRVTG
>gi|99078524|ref|YP_611782.1| type I restriction-modification system, M subunit [Ruegeria sp. TM1040]
MTPITQSEINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYVSDVWKDHKASYAAHYPDSPELVAAMMER
ETFKLPETASFDALHGRRHEPGNGERIDKALHAIEEANGSKLRDVFQDISFNSNKLGDEEQKNDILRHLL
EDFAKTALDLRPSRVGNLDIIGGAYEYLISRFAATAGKKAGEFYTPAEVSELMARLVDPQPGDDICDPTC
GSASLLMKCGRLIREGGSKAYALFGQEAIGSTWALAKMNLFLHGEENHQIEWGDTIRNPKLRTSDDMLRH
FDVVVANPPFSLDKWGVESAEADKFARFRRGIPPKTKGDYAFILHMIETLKPKTGRMAVVVPHGVLFRGS
SEGKIRHKLIEDNLLDAVIGLPEKLFFGTGIPSAILVFRKDKADDSVLFVDASREFVAGTNQNALDMTLI
EKIVATHQTRQTVEKYAYRATLAEIIENDFNLNIPRYVDTFEEEEEIDLMAVRAERMKLKGEMAELEDRM
EGYLQELGY
>gi|99078525|ref|YP_611783.1| BRO-like [Ruegeria sp. TM1040]
MSQNKTIFSNLLGDLSVISIGDQAWFLADEVYAALGLFLRNDPQTLVLQQSEWSVMSSQSGVTNAQTPVV
ISEAGVYKLAFLSEEPEVREFQDWAMNTLLPTIIHDGFYMMGEEEMFSTPECDVTQTLIQSASLKASHEA
DLELLCSVILPELRADGAFFRDLPSYVEQPVENRELRVRQAVSLKQKRRLP
>gi|99078526|ref|YP_611784.1| phage integrase [Ruegeria sp. TM1040]
MSETISPAFTFVKDGVFYFSRRIPKDLKKHYTSPRIAYSLRTRSARIAEARARRAADQLDEYWYHLRSKD
VELPGKHMLRMQSEGRVAVSAAAPEISSSSVLLSEAVGIYLRLKGQGRPETFHRAAERSCGYVIDACGDK
QLDAFTKADANKFRDALIERGLAGSSITRIFGTVRAVTNFAASELGLTLTNPFNGVYYDREAGVSDRNPI
PADALKVVQGQCRQLDDDMRWLVALVSDTGMRLAEAAGMARQDIERRSDGSLVAWVRPHPWRRLKTKGSE
RVVPLEGQAKWAAERLLSEVVESDFLFPRYNRKPQTNANAASAALNKWIKQMTPEGCTMHSFRHSMRDRL
RAVECPSDIVDQIGGWQTDGVGHGYGSGYPVEVLQKWMKAVT
>gi|99078527|ref|YP_611785.1| hypothetical protein TM1040_3554 [Ruegeria sp. TM1040]
MSCPICGKPTQQSVRPFCSKRCADLDLAKWLNGAYAVPSEDQEDLENALEDQKNLPPTEH
>gi|99078528|ref|YP_611786.1| ribonuclease [Ruegeria sp. TM1040]
MKGTQIILDHINGREAAARMVDGVLDDFLIAGDAPLPGTIYRARADRPVKGQGGMFLTTPDGPAFLRQVK
GLAPGQMLLVQVTGYAEPGKALPVTQKLLFKSRYAIVTPDAPGLNISRSIRDDDERDRLLEIAHSEMDGV
EYGLILRSVCAGADPDEIAEDIAAMVTAARQVLEDSSNQSEVLHEGDAPHLQAWREWTAPADIEQEPGGF
ERCGVLDALEALQSGKIAIGGGAYLYVEPTRALVAVDVNTGSDTSLAAGIKANMACARNLPRALRCLGLG
GQIVIDAAPMPKKDRRAFETALRTAFKSDPEETTLAGWTTLGHFELQRKRARLPLSEILS
>gi|99078529|ref|YP_611787.1| maf protein [Ruegeria sp. TM1040]
MAFILGSGSPRRLELLAQLGVTPDDIRPPDIDETPQKGELPRDYCARVTRQKAEAVTSNPEDLVLCADTT
VVLGRRIMGKPRDAGEAAEFLLALSGRRHRVITSVALRKQDRLWQKDVVSQVKMKRLSDEELNAYLATGD
WEGKAGGYAIQGPAGALIPWISGSFTAIVGLPLAETATLLQTAGYPLYKDTAS
>gi|99078530|ref|YP_611788.1| translation initiation factor IF-1 [Ruegeria sp. TM1040]
MAKEDTLEFPGVVKELLPNATFRVELENGHEIIAHTAGKMRKNRIRVLAGDRVQVEMTPYDLTKGRINYR
FK
>gi|99078531|ref|YP_611789.1| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Ruegeria sp. TM1040]
MKIATAAYPLDWLDSWTHYEDKLSKWVSEAADGGAELLVFPEYGAMELATLDGADIAGNLEASIQAVSDK
MEDAAQLHLKLAAEHNVHILGASAPVHAGFTRPVNRAEFYSPQGKRAHQDKQIMTMFERDPWDIAPGGPL
KIFETALGKIAVLICYDSEYPLLARALSEADMILVPSCTEALAGYWRVRIGAMSRALEQQCVTVMSSVVG
SAAWSEAVDEGCGMGGVFGPPDTGFPSTGVIAEGTLNQPGWTFAEVDLQAVQNVRSAGVVRNKTHWGEQD
SRLQNLVNHNLL
>gi|99078532|ref|YP_611790.1| hypothetical protein TM1040_3559 [Ruegeria sp. TM1040]
MALRVDTLTGAALEAALGDVARLRIEVFRAWPYLYDGDLAYERDYLQSYRDSDSAILVGAFDGDQLVGAA
TGTPMVDHADDFAAAFAETNIDIAEVFYCAESVLLPAYRGQGAGHGFFDAREAHARTLGFGKSAFCSVIR
PADHPLRPADYAPLDPFWRKRGYAPLPGVMAQFSWKDVDQKDETAKSLQFWCRDL
>gi|99078533|ref|YP_611791.1| hypothetical protein TM1040_3560 [Ruegeria sp. TM1040]
MNDTIARYFDAFNAGDTDGMLACLSEDVAHHVNEGNIRVGKEKFAAFCAHMSHCYKEELTDMVIFATPDA
TRAAAEYTVNGTYLATDEGLPEARQQSYKLPAGSFFDLRDGLITRVTTYYNLSDWIKQVSA
>gi|99078534|ref|YP_611792.1| protein tyrosine phosphatase [Ruegeria sp. TM1040]
MTELPQSILFCCDHNAVRSPMAEGIMKKLYGTGTYVQSAGVKNDLEIDGFCISVCQEIDVELSRHRSRSF
DEMEEWGDDISSYDLVIALSPASQRRALELTRFFHLDVEYWPIMDPTGLGETREAKLESYRQTRDQILER
LIARWGNPMET
>gi|99078535|ref|YP_611793.1| hypothetical protein TM1040_3562 [Ruegeria sp. TM1040]
MSRISQIELDDRNLPPPTPEIEQERKVAIFDLIEENSFVLPKRDERDVPEGPYHLSLSIREKRLVFDVQT
EGGDKAAEFHLSLSPFRQVVKDYYQICESYFTAVKTLPPSQIETIDMARRGIHNEGSRVLQERLEGKAEV
DTDTARRLFTLICVLHFGG
>gi|99078536|ref|YP_611794.1| histidinol dehydrogenase [Ruegeria sp. TM1040]
MPVFLTSAEADFEQSFTTLLNAKREDSPDVDAVVADIIADVRGRGDAALLELTQKFDRLDLPDSAALRIT
AEEVDDAIKSVSEAERAALELAADRIRAYHAEQMPENKSWTDAGGATLGWRWSAVSAAGLYVPGGLASYP
SSVLMNAIPAKVAGVERLAVTVPTPDGQINPLVLLACRVSGVDEIYRVGGAQAIAALAYGTETIAPVDKI
TGPGNAFVAAAKRRVFGKVGIDMIAGPSEILVIADKDNNPDWIALDLLSQAEHDESAQSILITDDAEFGS
AVAVAVDKRLETLERRAIAGASWRDFGAVIVVRDMDEAAALSNRIAPEHLELCVADPEALSKKTIHAGAI
FMGQYTPEAIGDYIGGPNHVLPTARSARFSSGLSVMDFIKRTTLSQMTPDALRSIGPAAATLAESESLEA
HGLSVLARLEALNR
>gi|99078537|ref|YP_611795.1| hypothetical protein TM1040_3564 [Ruegeria sp. TM1040]
MAENKKPSGNRSEASREDRLKAALKANMARRKAQAKARSEQKDAAPGDAEG
>gi|99078538|ref|YP_611796.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Ruegeria sp. TM1040]
MDSILVTGNGPLNGVIPIAGAKNACLTLMPATLLSEEPLTLTNAPRLSDIRTMTALLQSLGAEVSSLQDG
QVLAMSSHGLDNHTAHYDIVRKMRASILVLGPMLARDGHAVVSLPGGCAIGARPVDLHLKALEAMGAELD
LRDGYVHAKAPGGRLTGGTVDFPIVSVGATENALLAATLAKGTTVLKNAAREPEIIDLAECLIKMGAQIE
GHGTSTITIQGVDRLHGATHPVVTDRIELGTYMLAPAICGGEVELLGGRRNLLEAFCQKLEEAGIEIAET
EAGLKVSHKTGRVKAVDVVTEPFPGFPTDLQAQMMALMCTAEGESVLEEKIFENRFMHAPELMRMGAQID
VHGGTARVTGVERLKGAPVMATDLRASVSLILAGLAAEGETRVSRVYHLDRGYEHVVRKLSEVGAKIERI
KEE
>gi|99078539|ref|YP_611797.1| hypothetical protein TM1040_3566 [Ruegeria sp. TM1040]
MADATFEDGRERPLNLVAYEAEDLEVISSLAQDAVFPVTEMSWRASARRFAILLNRFRWEDRDAAERRGR
AYERVQSVLVIENVLRVASQGIDRRDRDMILSVLSVTFEPGEDGAGELLLTLAGDGGIRLSVEALEVTLK
DVTRPYHAPSKQVPQHGV
>gi|99078540|ref|YP_611798.1| 3-oxoadipate enol-lactonase [Ruegeria sp. TM1040]
MPLADLGDVQLNYRLIGPEDAPAVVFAHALGTDQTIWDKVLQRLPQNIRVLTFDLRGHGGSSVPPAPYSM
GNLIRDVERLMETCAIQDSLFVGLSIGGMIAQGLAVKRLDLVRALVLSNTAAKIATPEIWTRRMDTLRRG
GMPAISVDTLQRWFPRSAWKSDVYAATQTLLERTDVEGYLGCCAAIAGTDFYTPTSGLRLPALGIAGTED
GSTPPDLVRETLDLIPGSQFTLLRRTGHVPPIDQPEAFAERLTSFMKDTGHLAK
>gi|99078541|ref|YP_611799.1| pyridoxal-5'-phosphate-dependent enzyme, beta subunit [Ruegeria sp. TM1040]
MTSLAMIEAAAARLKGHARYTPLLSSPFLDEIAGRRVFVKAECLQHTGSFKFRGGWAALSAMDPELRKRG
VIAYSSGNHAQGVAAAAKAHGAPAVIVMPADAPQLKIDNTRALGAEVVLYDRVAGESREAAAEPLVAERG
LTLIKPYDEPEVIAGQGTTGLEIAEQAAAEGVTKADVLVCCGGGGLTSGIALALEAHAPNMRVRPAEPEG
FDDVARSQSSGQIETNPAPTGSICDAILTPAPGDITWPLLSRLCGPGLTVTDDQALEAMAIAFQRLKIVL
EPGGAVSLAAALFHPDQIDGDAVIAVATGGNVDPGQFTAALTRFL
>gi|99078542|ref|YP_611800.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MSRFETSDGLSLYFEEHGSADGIPLICLPGLTRDGQDFRYALPHLGDYRVILMDLRGRGRSDYAQDPASY
NILTEAGDVIALMDHLGLTRAALLGTSRGGLVAMAIAGTARDRLQAVILNDVGPDIAEEGLGRIFEYLGH
RPAAKTHAAAARILEAAMRDSFANVPEGRWLEEAQTFYKETPDGLELRYDARLREAMLAQAKALSEMEEK
PSLWPWFAALDGLPCGVIRGAHSDILSRETFDEMRRRLPALQAVELSDRGHIPFLDEPDALLLIHTVLKD
IK
>gi|99078543|ref|YP_611801.1| haloacid dehalogenase, type II [Ruegeria sp. TM1040]
MTIKTCIFDAYGTLFDVSAAARQAATEPAFAQIADSWATLAQDWRQKQLQYTWLRAVTGAHDDFWQVTHD
GLDWAMEAAGLQDQTELRQRLLDLYWELAAYPEVPAMLRALKDAGYETGILSNGSPKMLAGAVESANLGD
TLDAVLSVETVGVFKPSARVYDLVGERFGTRKSEVLFVSSNGWDAGCAAGYGFVTAWVNRAGEPVDRLPW
RPAHVLTDLQPIPEIAANA
>gi|99078544|ref|YP_611802.1| peptidylprolyl isomerase, FKBP-type [Ruegeria sp. TM1040]
MTAVKNGDTVRIHYTGKLTDGTVFDSSEGRDPLEFTVGAGHVIKGMDQGMLDMAEGDKKTLEIACEDAYG
PINPSARQAVPREGIPDDIPLEIGTMLQMQTPEGQVLPVTVVDVDEASVTLDANHRLAGQDLIFDVELVA
IA
>gi|99078545|ref|YP_611803.1| spermidine/putrescine-binding periplasmic protein-like [Ruegeria sp. TM1040]
MRNFLIGAALTLGGTMAQATEYLNIFTWDGYVAPEEVTAVNALLKEQGYDIEVRVMDTLAEGPEQMFDVI
RSGDVDVSFLTLNYINMEGVPFSNLLQPIDVSSPRLSNAQALLPELSAIEMGMSDAGPLYLPFGGGAYGI
WANDDVVAEHPTSVAELLKPEWKGRISLTSGQVQPNVALALMAMGEPPFAVQDASGDRKKVAELQKADGA
LQTTLSTLYDQVGFFWSAGPEFRDDFAFVASYGPGASAHVAEGGNWSLVNFDEGSTVWLDTINFSKKLEG
DKLEAAEIFANYFIGKEVQERIVNGLGMVAATTLVDANPMLDENPNFFAEDLFWPPYTKVANNVMNMLSK
RASGGGS
>gi|99078546|ref|YP_611804.1| lytic murein transglycosylase [Ruegeria sp. TM1040]
MNRRQFGAVAAAFGLASCAGPVTTAGRSRPSGTSSLPQDLRPIRNADYAKWVAAFRERAERQGFSQDLLS
RAFRGTGYLPGVVKRDRNQTEFSRTLEDYLSIAVSDERVRKGRAAYARHRGTLDAIERRYGVEAHVIAAV
WGLESYYGERRGNVPVISATSTLAYDGRRGALFEKQLIAALKILRNGDIAPRNMTGSWAGAMGHTQFIPT
SYLSFAVDFTGDGRRDIWSDDPSDALASTAAYLARNGWQKGLKWGGETGPGAPSGSVIQPQPGGPEFVTT
GNFRALKRYNNSDSYAIGVGHLSDRIAGGGPLRASFPPDRYGLRKADRIALQKGLTANGFDIGAADGVIG
PKTREAISTYQRRQGIAVTGDPSLELLRRLN
>gi|99078547|ref|YP_611805.1| hypothetical protein TM1040_3574 [Ruegeria sp. TM1040]
MTIKAILIAVPLMVVGWFSVLIVVALLSDEAPAYVVVLPKASLLRDLPEESAILSSTKLTITLTSDQAGF
ARDLYAAGARLVLPAGLPGCLPLPAGASRRQQ
>gi|99078548|ref|YP_611806.1| hypothetical protein TM1040_3575 [Ruegeria sp. TM1040]
MKLLWRWIKRLGLVALLLMLSLSAPILYVETMCRGDATPQPYAARLDPAHHRPETRTLMTFPEWYIVHAY
DDYAEVLRTGDPHDYAYLPAIGGFWTSICALNAEAAAYGDVDGGTKQMVYVIGVSFTAELALKATYEETL
GRLFAMLRGPEHSPLDKVSARQAADYASFLQQVPWYKWRFRADATELAQKATPALRDRERRLALGLEYRA
KAAYADIIADAVAQVGADALTLRMIVAGAGAETLERFEGVTIISERPEGIEIETPRYRALTHLLKRMATE
GIEIVEVAGNDDILFTALSTRASEPGALLSRTRQGYGDTRHLISLKVPDLAERLRQLESQGLTLEHIHDY
>gi|99078549|ref|YP_611807.1| hypothetical protein TM1040_3576 [Ruegeria sp. TM1040]
MTLLQKLSVGYFVALMIAASLNYIPGLTDEAGLAFGIFALDLYDDALHVASALWALIAGLMSHRAARSFL
ILFGLAYLGDGIFGFFTGYGYLDLGIFTNEALGMEISLRRVLANLPHLALGGVAVWAGLRNLGQRQ
>gi|99078550|ref|YP_611808.1| FAD linked oxidase-like [Ruegeria sp. TM1040]
MKALTRRAAMIGLGGAAGWGISRWLGADLPVYDGTARISAPTGPQILNDASGLSATPVQKHLILRDDADQ
SLIAALRRELSEARTEGRPVNIGAARHSMGGQAIPRNGTAITFDNGAVALDSAQQTYRVHAGARWSQVIA
ALDPKGWSPKVMQSNNDFGVAATFSVNAHGWPVPFGPMGATVKSLRMLLPSGDLVTCSATENSELFGMAM
GGYGLVGLIVDLDVEMVKNARLSPTFDLLDAADFPRAFRAAVEDPAVTMAYGRLNVERASFFEKALLVTY
RETPDQTELPQASGSGWMAHAASRLYRAQLGNETIKSFRWWNETRVGPALGSGEVTRNSLINEPVATLDD
RNPDRTDILHEYFVGFDAFDAFVTACREVIPASYQEFLNVTLRYVAQDDQSMLSFATTPRIAAVMSFSQE
LSQRAEADMARMTRALIDRIVAIGGAYYLPYRPHATLEQFVAAYPQAPRFAQAKRALDPDLVLRNNLWDS
YLDRL
>gi|99078551|ref|YP_611809.1| reductive dehalogenase [Ruegeria sp. TM1040]
MSIRFFSSRHRPVHLGPFPLERLRRSHQADLSNVPAALPLNFRRPQKPDSIVNAMCEYQAMMDAIRDGLV
NGTRGDVPADLQERSNHLKAFGYFADASMVGIGPMREEARLYEPWHNPDIDRLAEDLKTRQTKTLASGID
MIMADLKDAMQAPPTTIGAHRHAIVFLYEMPRDPRPDEAGCDWITDAEAHRACLRSAETAVVLANYIRLL
GWDAKAHTGTSSDVDLNRLAVAAGLVRMEEGQLVAPYLGTRFGLAAVTTDFELAEDRPLAPLSEQPGRAG
RDLRWWLGAGAERSALNGDPYKDRDFRDGPHPFETLKRVETPTTYIDEARVARVPKRADMFARAQFGDMG
KGNQKAATGGFYVRKAAPAMAQRRMLGAFVLLQDGTPAVGPRPTDAQRNADMVKAASYWLGIDAVGISRC
PDWTWYSHDATGTPIVPDQPHAISMIVDQGFDTTEGTSGDDWIAVAQSMRAYLRFSLLGGVIARQIRNLG
YKAKAHTVMDGEVLQPPLLLLSGLGEVSRIGEVILNPFLGPRLKSGVVTTDMPMAHDKPIDFGLQSFCES
CNKCARECPSGAITAGPKLMFNGYEIWKSDSQKCTTYRITTPGGAMCGRCMKTCPWNLEGIFAEKPFRWA
AMNMPRAAPALARLDDMLGNGEMNPAKKWWWDLELEEDGGYRPTRHPVNARSLQKDLDLRYEDQTLAVYP
APLAPHPYPYPFPMDREAGIEAYQAMITAEEYQERKARGETGDWDHIYKNDAESPVLQVVVSKVEEMAEG
VTKYEFRAADGADLPEWTAGAHLDIVVAPEFLRQYSMSGNPADRSHYQIGVLREDAGRGGSKLLHRIFSE
GRRIFVSRPINHFPLDETATRTFLMGGGIGVTPMIAMAHRLHALGADFEFHYSIKSRALGGYLRDLADVP
WASKVNLHVSDEGSRANFDQILGQYQSGWHLYTCGAAPYMDAVMQAAEQAGFPEEARHLEYFSVPEQPEY
ENHPFTLKLARSGRELQVRAEQTATDALAEHGIHVDVKCADGICGVCKCGLISGEVEHRDFVLSKAQRRE
SIVLCQSRAADPGGCVEIDL
>gi|99078552|ref|YP_611810.1| hypothetical protein TM1040_3579 [Ruegeria sp. TM1040]
MIITLEASNDELSSLTDDEAEDLFSRLLDADRMGRHIVVMNRRICEWGKQNTKLSGRNLSHLIDIKEAFA
TRGNISSYATCFLKVVLGNQPISIVDNCFMMGHKEFLQGEYASSKTMLIVENLNSDSKLYEFIFEKSITK
TKVPGWAVEFILGGGNTTVTAFEGEIAKKRITVCVVDTDKISPCDKLGTTARKVLNRHSKRNLQQYDPAT
PYVGTAIETVGHELENYIPLSSVKYLDAFSCPTCLDDLVDQEVAKSSADCLWLYFDIKKGIDGKRLLDKE
RTNIKNRSVLEWICKNTKIKLEDLHSLKIPGIGSTIVDHFLKNDLAKEQYTRFTNTDYWEHLFLEHLEKL
LWFLAAPKTLRS
>gi|99078553|ref|YP_611811.1| hypothetical protein TM1040_3580 [Ruegeria sp. TM1040]
MLVGRNSAGKSTFLRSLPLIRQSLETRSSAPILWYGDFVDFGDFQTAVSSEAKDGYAVFSFKVRDLEKRH
RSTVSHHTNYLLRYRTQTVKIDEAIVKYYVGAESGKTALKKISLEIPSEDLICDISYRGRLGTSGSLTVN
GEELPYILQNFEIVNSSNDLFSAPSLISKTKDANSNVRRRHSYQDIAVKELERFLRREIPRISSSDTFRN
EVANILSGTPHLEEKWKRLSETANTASFRKYYENIQKGTSGKSKDSILTIQRTFRALQVLDVINDDLQYF
FSGVSYLGPARAAGERFYRKQELEVSEILPNGSNFPMFLDSLSTGQKRSFSDWVESIFGYGVELKSHEGH
ISIHLKAGEKSVNVTDTGYGVSQILPVLATVWWSSRRTTERWGIPYGRRQAIRTIAIEQPELHLHPAHQA
KLADVFVKGIKLGQSETNINIVNILIETHSEALINRLGELIELGSISSDDVQVIVFAAEDDINSPTRMSV
ANFDSNGALENWPFGFFNYS
>gi|99078554|ref|YP_611812.1| hypothetical protein TM1040_3581 [Ruegeria sp. TM1040]
MEADILHSGFDGLKFTVETDIPPELRTALAEAKAQAIQTNAETVMEFGSVALSVRRTGGSAFSAHTGEYG
AEWYFLDPENRPANNPGITVDFRAFLLATGGLDAAEKHFRTCMDAFGIRYADHLLRVSRVDYAIDFLAPW
FEPDREALVVPPGTRVQEHTGIDETETHATGARVTGLRAGAVANRQLVIYDKRQEVMQKGKLGWLTIWND
ARAQLNRPPLDLTDRMTSQVWRFELRMGSKQLRNRWEMRSWQDLRDMVGDAYAEFCEKIRYTCPTTDSNR
ARWPTHDLWREVASVIANDLYENCSGVLPSEVIETNRAEHMRMLDRQILGLLVSRAAASEVQPHEFAEFL
DTHIEAIERMSEEHATPLAERIRKATERYRFK
>gi|99078555|ref|YP_611813.1| hypothetical protein TM1040_3582 [Ruegeria sp. TM1040]
MANQPAHKFKIGLITATVWQNDGFYSVDLSRSYKTDTGEWRNTGSFHHSDLLNLAKCAERAEIWIGRQIS
AK
>gi|99078556|ref|YP_611814.1| hypothetical protein TM1040_3583 [Ruegeria sp. TM1040]
MPRDHSNTGANMTAIHTTTNSTPSHPATDYWDGLITETEAADYLCQSVRTIQKWRVTGYGPKFYKSGRSV
RYRRRDLSEWIEQRSHSSTSSYSAV
>gi|99078557|ref|YP_611815.1| hypothetical protein TM1040_3584 [Ruegeria sp. TM1040]
MEHNLALLPQYQRETYSECDMKILCNIAGAPQDSRASMKLALEDIAAIYRRTTENSAPHPSTKETNRELS
SIAKRAAQLAQQIEDMSYEASLTFEQQNIEDETAHIDGVPSTASLVLSNEFQDTDTIAWTLEQGDIVNVL
RGIERAAKSGIERQSPQKSGRRLNPALDLWMSNVAAIWKEFSTLPFSRSVTDQNEPVSPAARFCAIAFER
LYHQTPTSRVMLAMKDHITRHRAQER
>gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040]
MRSFASTVLPRKRSREETKLPKLTKRTVEALMPEAKDYFLWDSQIAGFGVRVMPSGAKTYQAQYRKGGRT
RRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAPTVAALCERFFEAHAKERCKPSTQKEY
RRAIDLFIVPALGSFKVVDVERRDIAELHHKFRDKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVP
KYREVKRERFLSQSELQRLGQVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPD
SKTGARRIPLPQPARDVLARLPRTPGHPYVIEGKLPGQYATDLQHPWRRIRDRAGLCGVRIHDLRHTYAS
NAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSMVGDIGRPRLRAV
>gi|99078559|ref|YP_611817.1| phage integrase [Ruegeria sp. TM1040]
MRQTGNPNTQVQPADSRYERATSGGQFTTIAAYREHADGLALLIFELALGTGQRASDLTRMEWGHIEVGR
IWVTQGKTNVRFWIPFTKRLSSVLAGVDTSKSRFILTDESGHQLNYDQLQKQVIRVRRAAGLMDYSLHGL
RDSAAGELAEAGCTDHQIAAITGHKSLSMVQKYSKGASQKRLAIEAQNLREQIWGKT
>gi|99078560|ref|YP_611818.1| sporulation related [Ruegeria sp. TM1040]
MSRQDTRMKDKVSGPARLQRLVPSGAILALTGALVLAGCEEGANLPFLQPKDNAEQGLPSNSTKLVERDV
EAPDVFQVTEAGLWDGRPSIGGVWVAHPDVKDPERVIIRNNANGKFVIGALFRRERAIPGPRLQVSSDAA
AALSMLAGAPVELNVTALRREAVEDIPPEAEIPEIEGLEEQPQVAETAAVETQALDPIAGGAAAAIEAAA
PAPEPAPAAPTPSARSALAKPYIQIGIFSVEANAKRTADQMRNAGIIPTVYEQSSNGKAFWRVVVGPAQS
KGERTQLLKAVKAAGFADAYAVTN
>gi|99078561|ref|YP_611819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
MTIRCISLTCIGVLAGLWIASSTTAVQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMSKLMTLYVA
FEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEALSPDGTEAG
FARYMTRRARELGMNDSTFMNSNGWPDDGHRMSVRDLAILAEHLIEDFPEFYPMFAEQVFEFDGRAPSNT
RNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLNSTPERAEESEAIVNWSFRQFTKK
TIAREGIAVEQAEVWMGDSPTVGLVPAEDLEILLPALSDDAVKAEVVYTGPVTAPIQAGQQLAELVVHPE
DLPEMRLPLVAQADVGTGGFPVKVMTAARVLVQRFLNGPEDAT
>gi|99078562|ref|YP_611820.1| thymidylate kinase [Ruegeria sp. TM1040]
MTQNQGSGLFLTFEGIDGSGKSSQCRLLAEHLRGLGREVVLTREPGGSEGAEEIRRLVLEGDPDRWSAET
EILLFTAARRDHLERTILPALSAGKVVICDRFADSTRMYQGLSRGDLRATVDELHALMIGREPDVTILID
MDPETGLARAKGRQGTEERFEDFGLALQEKMRAGFLALADEFADRFRIVDGARDMDAVAADVARIVEAEL
EQRV
>gi|99078563|ref|YP_611821.1| DNA polymerase III subunit delta' [Ruegeria sp. TM1040]
MSEVDDLPRADQAEGAPHPRETAHLFGHAEAEAEFLSAFSSERLHHAWLIMGPRGVGKATLAWRIARFLL
ATPPVEDDGLFGAPPPPQSLDVAPDHPVSHRILALAEPGLAAITRSYNDKGRLRDQIVVDDIRVLNRFFG
LSSAEGGRRVVIVDSADEMNVNAANALLKMLEEPPARTTLLLISHQPSRLLPTIRSRCRTLRLGPLAPDD
MQTALEQAGAALPDDPTYLAALAAGSVGAAMRLLSLDGMKLYGELLAIVDSLPRLDRQRAMALAEKAAAR
GGAERFELMLTLLDVLLVRLARTGATGLAPTPEAAPNEGAILTRLSPNPQRARAWADLAATVTERTRHGQ
AVNLDPAALVLDTVFKMQDTASR
>gi|99078564|ref|YP_611822.1| TatD-related deoxyribonuclease [Ruegeria sp. TM1040]
MTTPQITDSHCHLDFPDFEGELPEVLARAAEAGVTRMVTICTKLKNEAAVRALAEKYEPVFYAAGTHPMS
AADEPLVSVEELVALAQHPKFVGIGETGLDYHYTADSAEIQKRSLSIHIEAAQETGLPLIIHARAADDDM
ARILREAYAVKEYSCVMHCFSSSASLGRAALDLGFYLSMSGIAAFPKSQELRDIFAEAPIDRVLVETDSP
YLAPPPYRGKRNEPAYTAHTAKVGAEVFGLEYAEFAARTQENFDRLFWKAAQYEAAA
>gi|99078565|ref|YP_611823.1| beta-lactamase-like [Ruegeria sp. TM1040]
MPTLRCTILGCGSSGGVPRLGGHWGDCDPKNPKNTRRRCSMLVEQDGPDGTTTVLIDTSPDMRSQLLDAG
VGRLDAVVYTHPHADHVHGIDDLRMVVFNMRERIPVYADAPTKADLLDRFGYAFIQPEGSSYPPILEMRD
IEGAFTISGAGGSIPFLPFLVEHGAIDALGFRIGDLAYLPDVAKIPEPVVPVLEGLECWIIDALRRTPHP
THFSYQDALSWIDRMQPARAVLTNMHIDLDYDTVEAETPDHITPAFDGMVIHSDY
>gi|99078566|ref|YP_611824.1| auxin efflux carrier [Ruegeria sp. TM1040]
MIFNLINVVLPVFVVVGIGYGLTLRGVFQQVQIDGLMKFAQGVAIPFLLFRAMAGIDLQSGFDPRLLISF
YTGAAICFFAGFMGARVFFKRDWEDCVAIGFCCLFSNSVLLGLPITERAFGPDALVGNYAIIAFHSPFCY
ALGITAMEIIRNRGQGGLRTATSVFRSIFKNNLILAILAGFAVNLSGLSVPEPVDDALALVAKAGLPTAL
FALGGIMVQYRPEGDLRTIAMVCCIALLLHPAIVYALGSALDVRQDLFRSGVLNAAMAPGVNGYIFANMY
GRAKRVAASSVLIATASSVVTVLLWLTLLS
>gi|99078567|ref|YP_611825.1| redoxin [Ruegeria sp. TM1040]
MFAGQKLPQVTFRTRVRDDSIEGPNPFRWQDMTTADYFAGKRVILFSLPGAFTPTCSTYQLPGFENGFED
FKAEGIDEIYCMSVNDSFVMNKWAEAQGIKNVKVIPDGSGEFTRKVGMLVAKDNLGFGMRSWRYAAIIND
GVVEAWFEEPGRDDNHAEDPYGESAPENLLKHLKEKVSEAA
>gi|99078568|ref|YP_611826.1| hypothetical protein TM1040_3597 [Ruegeria sp. TM1040]
MSRESALSRASRYFEAGDFQSDLAHLVTYRSESQNTAPEARMECRRYLEEAMLPRLRALGFDCEIIDNPD
PTGGPLLIGERREGEALPTILTYGHGDAVLGQEGRWREGLEPWVLVEEGDRLYGRGTADNKGQHLINIAA
LEAVLAERGHLGFNTRIVIEMSEEVGSVGLPDVFRAYKDRLTADVLIASDGPRLQPDVPTMFMGSRGGTT
FDLVVETHEGAHHSGNWGGLLSDPAMILAHALACITDVRGQIKVPEWRPDSLTENVRMALRDLPVAGGQG
PAVNPDWGEEDLTPAERVFGWNSFTVLAMVSGVPEAPVNAISGWARATCQLRYVVGTDPEDVVPALRRHL
DAHGFESVEIRCHERGFFAATRLDPDHPWAQFVGESIRRTSGALHVLPNLAGSLPNDSFTDILEVPTIWV
PHSYRGCSQHAPNEHVLKSVYHDALRVMAGVFWDLGEQGGPLA
>gi|99078569|ref|YP_611827.1| gamma-glutamyltransferase 1 [Ruegeria sp. TM1040]
MSALSQTQITRKYVIETAGGVVASQHRQAAEAGAAVLRAGGDAVDAAVATSFVVGVLEPWMSGPAGGGAA
VHWRADTGEAVAINFGMRSPKGLDLANYPLSGDGKAGDLFPWERVVDDRNVEGATAIAVPGTVDGIGQAH
ARWGRMSWAELLAPAIAHAKEGMLVDWYAALMIASTARNLARDPDAAALFLDDGVWPKGSGWTAVPDNRL
DQSRMADSLAHIAQHGPRAFYEGDLAQAMARDVQDKGGCLSADDLAGYRAWMGNARPVSYRNAQFHVMPG
LTAGPTFARVLEQLESADLSTPASAYVAYARALDRAYAERLGKMGDDGEVPEAPGCTTHFSVVDRDGNMV
SHTQTLLSIFGSRVVSPATGFLMNNGIMWFDPEQGRPNSLAPGKACLMNVCPILGETVDTRFAFGASGGR
KIVSAVSQLASFVVDGEMDIEAAFHTPRIDMSGGEQIIADETLPPEVLGALNAEKPTVPTRRTVSPYAFA
CPAGVMRKDGKNSGCTEVMSPWGDAITEGQT
>gi|99078570|ref|YP_611828.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MSDVLTLNGVTKTYSVKQGLFGARKPLTAVNNVSLSLGKGEVLGLVGESGCGKSTLAKLLLGLEKPTSGQ
VLVDGAPMDALDRRALAGRLQPIFQDPYSSLNPRKSIYDLISLPLRVHKIGDSTSQRKAVKEMLDVVGLP
QRVMNTYPSQMSGGQRQRVAIARALVMKPEIVICDEPTSALDVSVQSQILNLLGDLRREFGLTYLFISHD
LAVVEHLATRVAVMYLGRIVEEAPVAELFETPKHPYTRALLSSVLTPEPGLGVPETALGTAYPNPIAPPS
GCAFHPRCPLATAHCKTQAPRTIATAQGRVECHYEDPDSPMPRKDAA
>gi|99078571|ref|YP_611829.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MSDTLLSVKNLTLDIPTGSGTLHAVRGIDFDLMRGETLSIVGESGSGKSLTSLAVMGLLGKSIKRRADEM
RFENIDLLTANRRVMRDLRGNRMAMIFQEPMTSLNPAYTIGDQLTETLLLHRKVSKSAARARAIELLEKV
GITAAESRLSQYPHQLSGGLRQRVMIALALMCEPDLLIADEPTTALDVTIQAQILRLLVDLTREMNMAMI
LITHDLGVVARVADKVAVMYAGELVETGPAADVFATPSHPYTRGLLRCIPQPGKTERGAALGTIPGIVPS
LIGEVSGCAFRTRCLHARPECRADIPLRGEASHEFKCIHPDGALSHEGEAV
>gi|99078572|ref|YP_611830.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MTDATDPLYQEIQGPTPRQMLKTRALGHKGLIFGLCVVGLLVVIALLAPVLAPHNPYEQSLMNRMVPPVF
LGGTWEHPLGTDHLGRDYLSRLIYGARVSLLIGAVAALISGVIGTAMGVAAGYFGGKVDAVVTFLINVRL
AMPVVLVALAVVAILGGSLTVVVCVLGLLLWDRFAVVMRASTLQVSRRDYVAAAQVIGASTPRILLTEIM
PNIFNNLIVVITLEMAHAILLEAALSFLGLGVQPPTPSWGLMVSEGKNMMLFEPWLVLIPGAVLFLLVLA
INLMGDGLRDVTAPEGRS
>gi|99078573|ref|YP_611831.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MLPFILKRLGLALLVAFTVSFISFSLLFLSGDPAAALAGETASGEDVEALRRLYGFDRPMLVQYGEWLFA
AIRGDFGESYYFKLPVAGLIAERLQVTMLLGVCGISFALLTAVPLGVAAAIRPNSIIDRVALFLSVAGQA
MPSFWFGLILIVVFAIQLGLLPPSGAATWRHFIMPTIVLGYYAMPAIMRLTRAGMLDVLNSDYIRTARAK
GAGEGRVLFKHALRNAIIPVVSLAAVQMGFMLGGSIVVESVFALHGAGFLAWESIARNDLPTVQALILVF
SMFYIIFTFLADVLNAWLDPRMRSS
>gi|99078574|ref|YP_611832.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MFDLSLPRSALIALTLASTTAMPALAEKAAGTLNVAFTKELENVDSYFNSSREGVVMQRAVWDGLIYRDP
NTNEYIGNLATSWEWIDDTTLEFKLREGVTFHNGEPFNADDVVYTVNYVANEENGVKTQRNVNWMKSAEK
IDDYTVRIHLKDKFPAAIEFLSGPVSMYPNEYYAEAGPSGMGLKPIGTGPYKVTEVVPGQHFVLEANETY
HDSPKGQPEIAKIDIRTIPDVNTQMAELFSGSLDLIWQVPADQAEKLAQLGQFTVANESTMRVGYLQMDS
AGRSGEDNPFTNAKVREAVNYAINRQELVDALLKGSSQVVYTPCFPSQFGCVQDVTTYEYNPEKAKELLA
EAGYPDGFSTEFYAYRDRQYAEAIVSYLNAVGIDTDFKMLQYSALRDLNMKGEVPLSFQTWGSYSINDAS
AMVSQFFKHGSLDSTRDDEVLDWLNVADSSTDPDERIEYYTKAIQKITGEAYWAPMFSYNTNYVFTSDVS
YTPTADEVLRFVDMSWN
>gi|99078575|ref|YP_611833.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MEKKPNSLFVGTLAKGLRLLRAFDESHVSLSLAELVARTGLEKSAVQRLAYTLHHEGMLERDPGTRRYRP
SHAWLELAYAYYWSDPLISRALPKLIEFSRAYGEIVNLAQISGDHIIYSLRLPNQRTQFAASIVGRRLPA
LGTASGRVMLSTWSDAEVEHALETWPVHSATPKTIIDRDVIAQDIARARQEGFAITKAQMMLNEISLAVP
VISIDGRADAALQVSVSSLTFDEARLKEEILPALLDTASGIPG
>gi|99078576|ref|YP_611834.1| aminotransferase [Ruegeria sp. TM1040]
MKTTSITHRLADLGGAKWDLHTAARDRSDRGEDIVEMTIGEPDVALPEPLARAATRAIEAGRTQYSNGRG
ENGLRDALAESYSARRGRCFERDNVLCFPGTQTALYAVMQGVAETGDEVLVGDPLYATYEGVIRATGADM
VPVPLKAEHGFRMQADDIAQRITERTRAILLNTPHNPTGAILRPAELEAIAEIALKHDLWLISDEVYEDL
VFDGNSFTSPLTLEQIADRTIAVSSISKSHAAPGMRSGWAIGPRSFMDALLPVSETMLFGNQPFIADVTE
EAVRAGSTVAEGMRQRFAKRAQYLADRLEAETVLRVHRPEAGMFALVDVSPLGMDCDAFAWALLENAGVA
VMPGSSFGAHLQNWVRLALTVEDAAMTKAVDRISEFARSVAVAAQ
>gi|99078577|ref|YP_611835.1| UDP-glucose/GDP-mannose dehydrogenase [Ruegeria sp. TM1040]
MADGQPNQEQICVIGLGYVGLPLAVEFGRSRPVIGFDIDQSRIDELRLGDDRTREIDRDTLQSAQHLALT
SDISEIAAASIYIVTVPTPIDATRRPDLRPLLSATRTVAQVLKPGDTVIYESTVYPGATEEDCVPLLEEI
SGLVFNADFGVGYSPERINPGDKTRRLPDIVKVTSGSSPETAAKVDRLYASIVRAGTYPAPSIRVAEAAK
VIENSQRDINIALINELAKIFNRMEIDTEAVLKAAGTKWNFLNFRPGLVGGHCIGVDPYYLTHKAQEVGY
HPEILLSGRRLNDGMGAYVAQQMIKAMLRRRVQVVDSRILVMGLTFKENCPDLRNTRVVDVIEALRDFGV
TVDVFDPHADPEEAYAEYGLRLIQHPETECYDGTILAVAHQEFKDMGAEVLRSFGKADALLYDLKYVLPA
EDADLRL
>gi|99078578|ref|YP_611836.1| asparaginase [Ruegeria sp. TM1040]
MTICVIHTGGTIGMAPSPEGFAPKTGIVEAELDRLQRIGAIEADFRVVTASPLIDSANATSADWNWIMAQ
IAAHDDDCAGFVVTHGTDTLAFTAAALSFGLKGLRKPVVITGAMLPLSEEGSDGSDNLRDAFRAVEQAAP
GVWVQFAGKLLHGARVRKSHSVAFDAFNASPTDAAPLRAAETLGIFEYGDATALIAAVAPGMNASLISYA
VEQAAGIVLRCYGSGTVPEGLGLRKAMLQARDTGVPVLAVSQCAEGGISLGTYAAGAMLAQTGAIDGRDM
TVEAAYAKLLHALSQSADLATRREILETRLCGEWAL
>gi|99078579|ref|YP_611837.1| amino acid carrier protein [Ruegeria sp. TM1040]
MQALEQFFGVIGDLTWGWSLVPILVIFGSFITVATGFVQIEFFGRMFRVLTRGRTDTGQISAREALLVSV
GGRVGGGNIAGVAVAITLGGPGAVFWMWAIALVGMATSLVECSLAQLFKRADPLTGQYRGGPARAILHGL
GENYRWLAVIYAICLIAAFALGFNAFQGNTVAGAAEASLGIDRLWTGIFLAIVTGFIVFGGIRRIAKASE
VVVPVMAVGYLLMALIVILTNIGEIPQVLRSILANAFGFEEAVSGGMGAALAQGLRRGLFSNEAGLGSAP
NVAATAEVNHPISQGITQAFSVFIDTIIICSCTAFVILLSDVYVPGATDIDGVALTQSAMVSHLGAWSQY
FMTFAILLFAFSSVIYNYYLGENAISILTKTPHAMTLLKLVVVGIVFLGAVAPNATSVFFFSDPLMGVLA
LVNLLALMMLFPIALRVLQDFRKQLKAGVERPVLRMEDFPDLDLDPNAWPNRGQS
>gi|99078580|ref|YP_611838.1| RpiR family transcriptional regulator [Ruegeria sp. TM1040]
MTKPIDPQQANRLLSTIKSRIETLPPKLKTAAKYVIDSPGDFGLDPIRVSADKAGVSPNTLTRLAEVFDY
EGFEDFRAPFRAALVTDREADLGSEWLDQLAAGDQTSALQARAARNALNITARSLRLMTPERTTAIVDAM
TSARHCFVTASRSTHALAYYFHYVGRMALPTLELVPRHMGDAADDLLDIGPQDCLFAMTFAPYSTSTIRA
IRMAREAGATVILLSDSDTIAPGVRADHQLTFSAQSPHHFGCLSGAMVLLESLLSHLIHAGGADAQARIS
RYETLRQDSGVYWSAKRLPRTPSR
>gi|99078581|ref|YP_611839.1| PEP-utilising enzyme, mobile region [Ruegeria sp. TM1040]
MLIVALGFANHWQWQSHKTEEQLRLQATLTRPAQFAGTEIKDEELKETSYSAQETHAQGITTEEASALLS
NGDVKFFDIRETAENAMGTLPGADHIRFPDFRENPPLAPGDTVVLFCHNGNRSSETCTELAKLGIDCRFI
TGGIEKWIVEGRDFSDSRVQSLSDLRAIPEYPNKSRLINTETFKSYMAGEHVQIVDTRYPGDFETGHLPG
AINIPLRALTSEELARRISRLRKVPTVAACYDRRSCFMGQVLGLELTQAGIPFEGRYTVPWEYFIAPPPK
PHVVEWLAEQESGLWDKAIAGLSAALLWGHAKSHLLLSLLALAAISRVLVLPIALKSESDQITLRRHKAD
LEALKTRLAHDPMRKARAIRAFYAQHGLTPMRNMAALLFLPLMMLGLQAAERAAAEVAGGFLWIADLGAP
DPMWIAPVLTCGLAGAYLVLAIAKSRRAAFLWLVLGLPALFLLTMGLSAAGNLYLAMSLTGLLVQYLYVS
GAFARKIQLRKRLPDGVHALAQTEALSTAGNKALRLSQMSRAGFPVPKAVVLTDRFLNQFKDADDPKQQQ
MAASIWRNVGPRPCAVRSSASNEDGADQSFAGVFDSVLDVNKETLCAAIRSVLASFASERADSYGSAEAG
HANILVQEMVNATFAGVLFTQDMQAPGMMLLEWVEGCGEDLVSGRKTPGTARFGRVSGLAAQDTYAPPFD
PANLLQMGRAIEALFERPQDIEWAWSEGQFYILQSRDITTVAIGSASEQAAAEEWRRLFAARSHTEDSDA
IILEQDEMSEVLPRPTPLSFSLMSNLWAPGGSLDLASRALGLPYNLPEGEDAHLVRLFGKTYVDTALKKE
LSMDLRGNRANRMRKQLTPTLEGFEREVLPALLDRIEDWQALRFEALPRHKLLKTISVLRDYFVTEIYVE
AEKINLLAAFAMQEANAAAQGDPALRSHLMQAELKYSPASLLAQCTGTEEEAQARALELMGHRAMFDYEL
STPRYYEAPGLLFTLLDPSHHGLEPAELPSGVPETLRQTLEIAIAFQDLKERAKHESLRVLSELRRALCA
LGEDTGLGSLIFYLTLDEILTADWTQVDMLRAQAEQRKHHDTLCRDLAPNAVQLSLRDCEQLSSGGVKTL
DEGTLGGICVAGSGRATGRVYRIADETAYGPEAFEGFEPGDIIVCRMVNPAWLPQVQQAGAVISVVGGWL
SHMAIVAREKQILMLVGAQGLEALSHGDVITVTDRGEIEPESDSSEALRA
>gi|99078582|ref|YP_611840.1| phosphonate-binding periplasmic protein [Ruegeria sp. TM1040]
MPKAYASVRSTAAHSPSGCGAVKRLATALVACVLLLVAAHPARAEIELVFGTYAADKPSATVRKYRPFLT
FLENQMEILLEEDVTIGLKISKDYETSIDDLAIGRVDFARFGPASYVHATDRNPGISIIAMESKKGSKRF
RGVIAVHKDSGIERVEDLAGLSFAFGDELSTIGRYLSQSYLLDAGITADQLHGYEYLGRHDLVGEAVGAG
KFSAGALKESTFKELVAKGVPIRALASFDNVTKPWLARAGLDERVLEAMKSVMLSSQNE
>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
MKAPLRKLLQSKGILSQIVVSMSLAALLVVVAVGGVARRYEVERVSEQLSEQANLTVSLLSGLMLEAIIV
EDVPVLETGLVEAITRYPKILSINIENSEGEVIAEASNSAADEAEGYVMYRRPVEFEGFVFGTMVVQWST
AEGREIVLDKVRQTITWTVLAVIAMSLLMLYLVYRLALNPLQIVHARMSNAVAGAKTGHFSLPWYSSREF
QALNVSVGVLEDSFAERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETELTP
DQELYTETIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIMLLAPKAAEKWVQLTLRYD
PDLAEFYDGDAGRIRQIVTNVVGNAVKFTSRGSVHIDVTGVARGQLMDLRISVVDTGIGIPAEKLDRIFH
AFEQVDGAATRNFEGTGLGLAISTRLLQMMKGRIHVTSSEGKGSVFTIDISLPTSDRAPVAFLPEQPVSG
LHALIVDDLELNRRILGERLRSWGLRVTEAASAMEAMLHLDEMRDATDTCDLIFLDYNMPDCDGYELALR
IRGLPNTASVPIIVISSVDPALSQSMLADIEVCHQVLKPVRADDLRGVISQALGAGSAVEERAPSGSEDA
KIMQRIKVLMAEDNRTNQVVVTRMLKSESVDIIIASNGQEAIEMYLRERPDVILMDMMMPVMDGLDATKA
IRKIENETGVRQVPIIALTANALQSHEEACLEVGMDDFLSKPIRKQALLDALHQWTEDRDSAEPQNKLEA
>gi|99078584|ref|YP_611842.1| hypothetical protein TM1040_3613 [Ruegeria sp. TM1040]
MIFLDDFIIRAALAGIGVAFAAAPLGCFVVWRRMAYFGDATAHASILGVALALTFDVSIFSGVLVTALLM
ASTISTLSGRGYAMDTLLGVMAHSALALGLVAVSFLQGVRVDLMAYLFGDILAVSRGDLAVIWSGAAMVL
GLMWWRWSSLLIATLNPELAQASGVNPRREQLVLTLALALVVAVAIKVVGVLLIAAMLLIPAATARAFSS
TPERMAVLAICIGCASVVGGIYVSFGADTPTGPTIVSTGTALFAAASIVALIGRSLRRQG
>gi|99078585|ref|YP_611843.1| ABC transporter related [Ruegeria sp. TM1040]
MRLVSLRNATIRHSGTPALENVDFHIDRGEIVTILGPNGSGKSTLLRSIIGALPLSSGTVERAQDLRIGY
VPQKLHIDPTLPLTVERFLSLPVRISKTETENALAEAGVPGLRKRQMTGLSGGQMQRVLLARALLSKPDL
LILDEATQGLDQPGSAAFYQKIASVRSQIGCAVLMVSHELHVVMAASDRVICLNGHVCCEGAPAQVASAP
EYQALFGSGTHGALALYRHEHDHSHDCDHDHAKDEHEHA
>gi|99078586|ref|YP_611844.1| ferric uptake regulator family protein [Ruegeria sp. TM1040]
MDSVGFTSHDHTRCISGGLESIETFCKDNRLQLTPVRRRVLEILLQQHRALGAYEILDYLRDEGLGSQPP
VAYRALDFLVKHGFVHKIERLNAFIACVHPGETHTPVFMICRSCDSVAEAQREPMQGQLGDAARAAGFTI
ERAVVEAEGLCPKCQE
>gi|99078587|ref|YP_611845.1| periplasmic solute binding protein [Ruegeria sp. TM1040]
MPRTVLSALFLSLSVVPALAETPRVVTDIAPVQGLVARVMDGVGAPDVLVPPGASPHGHSLKPSDARALT
SADAVFWIGDELSPWLLGSLKELAGDAHVVSLLAAPQTMRLEFREGVVFGGADHDDHGHDDHDHDAHEDH
AHDGHGHEEHDHDDHKGHDDHGAHDHDDHAHDQDAHGHDEDAHDAHDHDSHETAHDDHGHGHDDHAHDGV
DPHAWLAPENGKQWLALVADELSEIDPANADTYQNNARAGQAEIDAIVAATKADLGEAHGQFVVFHDAYQ
YFEQSFGLRALGAIALGDASDPSVARIAEMRDAVAGQEVSCVFSEPQFNAGLVDTVADGLDIKAVVIDPL
GTEIATGPSFYTDLLSEISAGFKTCLTH
>gi|99078588|ref|YP_611846.1| methionine synthase (B12-dependent) [Ruegeria sp. TM1040]
MQNFNLPKSKAFEALSKTAQERILILDGAMGTQIQKLGLDEEAFRGHGGHSCAFHSNHPQQGNNDLLILT
QPEAVEQIHYDFAMAGADIVETNTFSSTTIAQADYALEDAVHDLNAEGARVARRAMDRATAEDGKQRWVA
GAVGPTNRTASISPDVNDPGYRAVTFDDLRVAYGQQIRGLIAGGADLILIETIFDTLNAKAAVFACFEAF
AEHGERLPIMISGTITDASGRTLSGQTPTAFWHSVRHARPFTVGLNCALGADAMRPHLTELAGVADTLVC
AYPNAGLPNAFGQYDEEPEDTAAKVEIFAKEGLVNVVGGCCGTTPEHIRAIAEQVAPYAPRRIREAANV
>gi|99078589|ref|YP_611847.1| methionine synthase (B12-dependent) [Ruegeria sp. TM1040]
MSEPLLRLSGLEPFVLTKDIPFVNVGERTNVTGSARFRKLITNRDYATALDVARDQVENGAQIIDINMDE
GLIDSKQAMIDFLNLVAAEPDIARVPIMIDSSKWEVIEAGLQCVQGKPIVNSISLKEGEESFLHQASLCL
AYGAAVVVMAFDEQGQADSFERKIEICARAYKILTEQVGFPPEDIIFDPNVFAVATGIEEHDNYGVDFIE
ATRWIRENLPHCHVSGGVSNLSFSFRGNEPVREAMHAVFLYHAIKVGMDMGIVNAGQLAVYDQIDPELRE
ACEDVVLNRTPKAGGSATENLLDIAERFKGGTREEKKRDLTWRQWPVEKRLEHALVNGITEFVEEDTEEA
RQAAERPLHVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKQAVAVLLPYMEEEKRQNGGGGKDTAG
TVLMATVKGDVHDIGKNIVGVVLACNNFEIIDLGVMVPPQKILEEARVHNVDVIGLSGLITPSLDEMVHL
ASELEREGFDIPLLIGGATTSKVHTAVKIAPQYERNQAIYVTDASRAVGVVSSLLNDTQRDSYVADIQRE
YKEVAERHERAERAKTRLPLTAARENAMQIDWSGYQVKAPEFTGARVVDDWDLAEIAQYIDWTPFFQTWE
LKGVYPRILEHEKYGEAARALFKDARAMLDRIITEQWFKPRAVVGFWPANRKGDDIRLFKDDTREEELAT
FFTLRQQTSKRKSSPNLALADFVAPEGVADWVGGFVVTTGPEEVEIAERFEKAGDDYSAIMVKALADRYA
EAMAEMLHERVRRDYWGYAPTEAFAPEELIGEPYRGIRPAPGYPAQPDHTEKLTLFELLDAEVATGVTLT
ESMAMWPGSSVSGIYIGHPEAYYFGVAKVEQDQVADYAKRKGLSQDEAERWLMPILNYHPGGRTGDQDEI
AAQ
>gi|99078590|ref|YP_611848.1| putative thiol-disulphide oxidoreductase DCC [Ruegeria sp. TM1040]
MRPPYSYRDDSNVPLFSDNTPIAVMDGECALCSWGARMIHRLDRSGRVRICPVQSPLGRALLKHYGLCAE
DPTSWLYLDAGQAYMDFEGMIHAGRSFGGWGHLVVALRLLPRPVRNWLYRRLARNRYMLFGKGDICALPD
PEFRKRLIE
>gi|99078591|ref|YP_611849.1| saccharopine dehydrogenase [Ruegeria sp. TM1040]
MRVLIVGGTGVFGARLAELLVRDGHDLTLAARNFRRAQRLASKLGCAALRLDRQGDLTGIAGFDVVVDAA
GPFSTEGKDPYRLARAALKAGQHYLDLSDNAAFCAGIRSLDAEARAAGRAAISGLSTVPALSSAAVRALS
AGARPEVIESAILPGNRSPRGLAVMRSILMQAGRPMRVWRGGAWETVSGWSQPKSYDLPQGLQRQAWQIE
VPDQRLFPDHFGADSVAFRAGLELAVMRYGLAAFAYLRRLVPVPINGFVLGIFKLGADLLAPFGSGRGGM
SVMVITNGERRFWRMLAEGGDGPYVPASAIRALLRRGEFPVGAQPALEVISLAEAEGAMGDLSVTTEVVS
EPVQAIFPRVLGASFDDLPEVVRATHQTSDLSRWQGQASVRRGRSLWSRFLGWVFGFPAQAAHIDVEVVK
TVSGDSEHWQRRFGGRLFHSVLTRTPAGMTERFGPFTFLLGLRVSEGALHFPVRSARLGPLPLPRWLLPV
SIAREHERDGGFCFDVKLLTPLTGDLLVHYQGQLAPA
>gi|99078592|ref|YP_611850.1| aldehyde dehydrogenase [Ruegeria sp. TM1040]
MNEMTQVAGEYTSPFKARYDNFIGGKFVAPVKGQYFDNITPITGAKVCEVARSSAEDVELALDAAHAAKD
SWGKTSPAERANTLLKIADRIEENLELIATAETWDNGKPIRETMAADIPLSVDHFRYFAGVLRAQEGSMS
EIDHDTVAYHFHEPLGVVGQIIPWNFSVLMAAWKLAPALAAGNCIVLKPAEQTPAAIHVLIEVIADLLPA
GVLNIVNGMGPEVGGPLAESDRIAKIAFTGSTETGRIIMKAATKNLIPVTLELGGKSPNIFFSDVMAQDD
AFLDKAVEGFVLFAFNQGEVCTCPSRALIQEDIYEEFIERCIARVKAIKQGDPRDIETMVGAQASQEQQE
KIMSYLTIGVEEGAEVLVGGDAARFNGDIANGFYVQPTILKGHNKMRVFQEEIFGPVVSVTTFKDEEEAL
AIANDTMYGLGAGVWTRDGTRAYRFGRNIEAGRVWVNNYHAYPAHAAFGGYKQSGIGRETHKMMLDHYQQ
TKNMLVSYNPNKLGFF
>gi|99078593|ref|YP_611851.1| putative GAF sensor protein [Ruegeria sp. TM1040]
MSSLTRHIEHVLKTATHPGAAARSRLAASWRRSLNHHGLDPGQRRDVQRICARSLAERMEQADCMRRIAL
PKIDALFQLVGGSGCGVLLTDCDGVVLDLRASDGDTDTFNAWGLAPGADWSEASEGTNGIGTCIAEARQV
IIHREEHFHARNTAMSCMDAPIFGADGRLIGALDVSSARADQTASFNQLIAASVAQTARQIEADVFRAAF
PEARIITAEAGTAEAAILLAVDGDDIVRGATRAARKVFNLSQTGPISPRPASDLLGSDDDSNGFDGAERA
AVNRALSRTNGNVSEAARLLGIGRATLYRRMKRLGMRGE
>gi|99078594|ref|YP_611852.1| phenylalanyl-tRNA synthetase subunit beta [Ruegeria sp. TM1040]
MKFTLSWLKEHLDTDASVEEITETLTDLGLEVEEVVNPADKLGAFTLAKVVGAEQHPDADRLRVCRVMTD
EGEKQIVCGAPNAREGITVVLCKPGDYVPGLDFTLSVGKIRGVESHGMMASWKELTLGEDHDGIVELPSG
EVGDKLVDWLAANDPAKVDPMIEIAITPNRPDALGVYGIARDLAARGLGTLKASDYKPVEGQFESPIKVT
IDEDTLDGCPLFTGRVIRGVKNGPSPKWLQDRLTAIGLRPISALVDITNFFTFDQNRPLHVFDAAKVSGN
LRVHRATGGEELLALDEKTYKMQAGQMVISDDNGPESIAGIMGGEETGCTDETVDVFLESAFWDHVQIAT
TGRALKINSDARYRFERGVDPEYTFEGLERATQMILDLCGGEASDVVSAGDVPDHARSYRLNAERVQSLV
GMDIPESEQRQTLTRLGFRLEGNMAHVPSWRPDVQGEADLVEEVARIASLTKLEGKPLPRLTAGIPAPVM
TPQQRRLQMARRTAASLGYNEVVSYTFIDKAAAGLFGGGTDETMLANPISSEMSHLRPDLLPGLLQAAAR
NQARGFADVSLFEVGPAFTGGEPGEERIQISGLLVNRNGPKDVHGASRNWDVFDAKADAEAILAAIGAPA
KVQILRGGDAWWHPGRHGRICLGPKKTLGVFGELHPKTLSELGIKGTAVAFTIYPDEIPLPRKSGASRSA
LAISDLQAVERDFAFVLDSEVEALTVVNAAAGADKTLIEDVRVFDEFIGGPLGDGKKSLAIAVRLQPADK
TLTEKDIEAVSEKIVAKVSKATGGVLRG
>gi|99078595|ref|YP_611853.1| hypothetical protein TM1040_3624 [Ruegeria sp. TM1040]
MALTVYLSGEIHTDWREQIIEGARDLDVQFSSPVTDHDASDDCGVAILGAEDSKFWHDHKGAKLNAIRTR
KGIEDADIVVVRFGDKYKQWNAAFDAGYAAALGKSIIVLSQPDHQHALKEVHAAALAVADEPRQVVEILT
YVLTGKLPG
>gi|99078596|ref|YP_611854.1| hypothetical protein TM1040_3625 [Ruegeria sp. TM1040]
MTAPVLETDRLILRRHELGDFDAVAQMWAEPEVVRFISGTPSTPEESWTRLMKYIGHWSMLGYGFWAVIL
RETGAYVGDVGFANFRRDMTPSLEGVPEAGWVLSPQVHGKGIATEAVACIHHWAETETLWDKTCCIFDPE
HHVSQRVAQRLGYQASDQLGSYRGKPTLIMHRMMSR
>gi|99078597|ref|YP_611855.1| hypothetical protein TM1040_3626 [Ruegeria sp. TM1040]
MNLMPPPVPRINRRRSGPVTPEYEDSGLFKGGIIQVRLALVPVFGTTSRGDCTARGFNAAGTEVTAVFAG
RRRPHFQAIYTQLRYMYAQAQQRDLLQGGKMRDVNDIQLPVQCEGAWRAVTTTDAHGVAHKNLQFMLARW
AFQAHDGQTLKFGTAPVVAKTKISQGTSPAKAPRPYFEQGPLAQRQGAGSHE
>gi|99078598|ref|YP_611856.1| MscS mechanosensitive ion channel [Ruegeria sp. TM1040]
MEDIIEQAGAYWPLVVSGAKALVVLVLGWIAAGMISGAVRNRINKTPQIDETLGSFVSSVVRWVLLAIVL
VAVLGVFGIEATSLVAMLGAATLAIGLALQGTLSDLAAGFMLILFRPYKLGQFVDIGGTSGTVKDLNLFV
TELVTPDNVQIIVPNGQAWGAIITNYSAHDTRRLDITYGIDYGDDIEKAKAIILRLAEADGRVLTSPEPW
VRVTNLGDSSVDISTRLWCDAGDYWELKWTMIQGVKEAFDADGISIPYPHSVEIQKQA
>gi|99078599|ref|YP_611857.1| L-alanine dehydrogenase [Ruegeria sp. TM1040]
MRIGCPTEIKPQEFRVGMTPDAAREAIAHGHQVMIQKGAGLGAGFPDEDYLAAGAAIIDTAEEIFADADM
IVKVKEPQAVERKMLREGQLLFTYLHLAPDPEQTHDLLASGCTAIAYETVTDDRGGLPLLAPMSEVAGRL
APQVGAYTLQKANGGRGVLMGGVPGVAPAKVVVVGGGVVGTHAAKIAAGMGADVTVLDRSLPRLKYLDDV
FGGTFKNRYSTAGATAELIRDADMVIGAVLIPGAAAPKLVSRADLSDMKPGAVLVDVAIDQGGCFETSRA
TTHADPIYEVDGIMHYCVANMPGAVARTSTQALGNATLPFLLALADKGWRQACADDPHLLNGLNVHAGKL
TYYAVGRALGLDVLSPSLALREGT
>gi|99078600|ref|YP_611858.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MALDQVDRRILAVLQKQGRISNSDLSETVNLSASACHRRVQRLESEGYIRNYVALLDARKLGVPTTVFVE
ITLQTQADEVLDAFEKAVARIPDVLECHLMAGTADYILKVVAENTDDFARIHRQHLTRLPGVAQMQSSFA
LRTVFKTTALPVG
>gi|99078601|ref|YP_611859.1| hypothetical protein TM1040_3630 [Ruegeria sp. TM1040]
MSSEQDNTSFEWLEAELQDTLDEDFEIEFAEPMLSMELRKIYRAQHPEMLDRKVYFRNLLRLQAELIKVQ
DWVQHTGAKVCILFEGRDSAGKGGVIKRITQRLNPRVARVVALPAPSRREQSQWYFQRYVPHLPAAGEIV
LFDRSWYNRAGVERVMGFATDDQVEQFFQDVPEFERMLVRSGIILLKYWFSITDEEQQLRFLMRIHDPMK
QWKLSPMDLESRIRWEQYTKAKEDMFFRTNIDEAPWYIVEGNDKKRERLNCIEHLLTKIPYHDVPSEKVN
LPDREYNPSYERRVLPDELYVPKIY
>gi|99078602|ref|YP_611860.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Ruegeria sp. TM1040]
MIWNLPNILTVLRLLAAPALAVMFLFFSRPHADWFALVLFVGAAITDWFDGYLARSWKQETKMGAMLDPI
ADKAMVVIALMILVGYSTSHWTAWLVLPATVILFREVFVSGLREYLGDTAGSLKVTKLAKWKTTAQMIAI
ATLFSQGIFEHHLGMGGFGMDAQMVNDVLSGVIEDTQGLRFYFEGMIWSGRIGLWLLWIAAALTLITGFD
YLKKALPYLKETR
>gi|99078603|ref|YP_611861.1| molybdopterin synthase subunit MoaD [Ruegeria sp. TM1040]
MDVLYFAWVRERIGLPKETVETSAVTVAELVEELKAREERYAAAFADLSALRVALDQELAEFDAPLEGVR
EVAFFPPMTGG
>gi|99078604|ref|YP_611862.1| molybdopterin synthase subunit MoaE [Ruegeria sp. TM1040]
MRVVVQEAPFDFAAEAEAFAQGAKGAGAVVTFTGVVREADGGAMAVMEIEHYPGMTEKALANIASDAATR
WELTDALVIHRHGRLAPGDQIMMVATAARHRVAAFEAAEYLMDYLKSRAPFWKKEILEDGSADWVEAKNS
DESALSRW
>gi|99078605|ref|YP_611863.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
MIGDEPIRIRQLQALNILAESGTMSLTAKAMNISQPAVSRLLSDLSKELGYPLFSRSGRRLTLTREAQYL
LPEIQRIFGAMGQIRNLRQNIQDGTSGHLKIACLPGFSTSHLPGVVADFLAARPKTTLTIEPDRPERILD
WVIGEQYDCGITDGFRSHHALDSKTIPIRCVCIFPEGHPLEAKSVIHPEDLAGERIAHDRFGSEFYLRLR
DILDAEGIAMDNFIETRQFTCACELVSKGVCVSVVSELDAQEYIGKGVSFRPFSANITHQLSLVWPRHTP
TSILTLEFLGLFEKSLEPYAMTET
>gi|99078606|ref|YP_611864.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MTDKLAQFSRIAVVTTAMATLPMMAGAETLRLLTWGGYAPEDVIAKFEEETGHTVEVTTSNNEEMIAKLR
ATNGGGFDLAQPSQDRITSAQEEFGIYKPIDMSRINADLFIPSMLSATAANTTFEGEVYGVPHVWGTSGL
VVNTEMAGNVQDYSDLCDDSVAGKVSYRLKRPTLIGFAYSMGLDPFAAYGDSAAYQGILDQVEAKLTECK
ANVKTYWDGGDEIKNLLRSGEVVASMAWDTGGWQLNADNPDITFVAPKSGALGWIDTFVLPARGRADDAA
YDWINFVMRPEIAAMITNTAGNFTAAVDGDAAVDADLKARYQSSFDQQAIDNIKWYPPVPAGLEAMEGAS
LDRINAAN
>gi|99078607|ref|YP_611865.1| ABC transporter related [Ruegeria sp. TM1040]
MTDSHPDLECRDLVKDFSDFRAVDRVSFEVPQGSFFSILGPSGCGKTTLLRMISGFQSPSSGDLRIKGKS
MIGVAPNKRPVSMVFQHLALFPTMNIGDNVGFGLRQRGVGKAEIKTRVEQVLERVGLPGVSARRVDQLSG
GQKQRVAIARCMVLEPDVLLLDEPLGALDLKLREHMKVELKALQAEFNTTFVYITHDQSEALVMSDNIAV
MNKGRFEQIGAPHEVYHHPSTAFVAGFVGDANKFDAKLKSKNGAMLTFETPTGAQMRVEAANSDLSEGQR
AQIFLRPEAIALSPTTNEGDDAANVSPGVVETVLFNGANSTVSVRGAAGELLKVALPQTGDFATLQKGDK
LFTRWRPMDARCFAAVEAG
>gi|99078608|ref|YP_611866.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MMTSDASRLGFYLLLAPILLWLVVLIILPHVGLFLVSISEKVGPREYETGFGNYAAFFTEPLYWRTFART
AIMSILATALTLVLGFPIAYYIAKLTRGRTKTVLFLMCMIPFWVSELVRTFGWMILLRETGVFSNALQSL
GLVSGPVEMLYNDAAIMVGLVYTSILFMVVPLVTTLDSLDDSLIEAGYDLGGTSTSIMREIVIPHAMPGI
VSGCIVVFMLSLGNYLTPILLGGKDSLWFTGMIYTQFITRFNWELGSAFGFLLLALSSLVVFLGLKLSGQ
TLSKTMGRS
>gi|99078609|ref|YP_611867.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MIPTVPQPGFAKWCYRAYVTAFFIYLALPLTVVCVFAFNNSVFPSLPWEGFTLAWFFGNEAPFIGVFNER
SILRSIGTSGFVALWVSGLAVAVGTCNAFLFVRHEFRGKALLYMLMLMPLIIPGVILGISILVFSSSAAN
ALEDATGMWFDGLRPGLPLVILGQFSFITTFATLVITARLQKFDPSLEEAALNLGASKWGAIRQITLPFL
LPAIVASAVVSILMSFENFNTTLMLVGSDSPLTITMFDKLKQGSTPVLNAVSLLLIIISAVLGLLSLLFQ
KQKPGS
>gi|99078610|ref|YP_611868.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Ruegeria sp. TM1040]
MTSSLDLIMFAALMAAILMGFPVAFSIAGIAVFFAYLGWMLGVMDISLLGAFGQRVFGLLSNEVLIAIPL
FVLMGAILEKSRIAEELLDTMGRLFGQLKGGLGISVVLVGALLAASTGIVGATVVAMGMIALPAMLRAGY
DPRVASGIVCTAGTLGQIIPPSTLLIILADVMSNAYQQVQYEQGKFAVEALSVGQFFAAALIPGLVLVVL
YLLYILIRGLLRPEDMPSAPAGIARPHRTEVLRAVVPPILLIFAVLGAILGGVATPTEAASVGAIGALLM
AGLRTGGPLRSILLGAGALIALGILSGLHPVRLQRNDLSSMDLVIGLFYALLAAAGAIAVLLSLRAGLKK
RILHDAVTSTATMTSMIFATMLAASMFSLVFIGLGGEDRVAHILSELPGGPSGALLFSMLFIFVLGFFLD
FVEISVIVLPLVTPTLILMGHDPVWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEITTRHIYQGVIPF
IGLQVLGVILVWFIPGLATWLPEAIF
>gi|99078611|ref|YP_611869.1| tripartite ATP-independent periplasmic transporter DctQ [Ruegeria sp. TM1040]
MIRVADALDGINRGLAHVIRWLALLMVLVQFAIVVGRYVFGVNSIAAQESVLYMHSALFMLAAGYTLLVD
QHVRVDVFFAGLSPAGQRRVDVFGHLFLLMPSMTALLYWSWPSVRNSWSILEGPLAVGGIEAVFLLKSLI
PAFCVLVMLQSLSLLIRLLFESDRR
>gi|99078612|ref|YP_611870.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040]
MQRRAFLKTGAMGAAATALASPAIAQGKMQWKLVTAWPKNLPGPGVAAQMLANRITTLSGGRIEVKLFAA
GELVPGRGVFDAVSEGTAELYHAVPAYWGSKSKGILLFGSQPFGLRADEQFGWLYHGGGQALYDEMYGRF
GIKPFLCGNSGPQWGGWFKTEINSAEDLKGLKFRTTGLASEMASKLGMAAEATSGPAMFQGLQTGALDAG
EFIGPWTDSALGYYQVAKNYYWPGVGEPSSAEECGVNADVFAELPDDLKQVVSLACESLYNPVWTEYTTK
HALALKKMVEEDGVQVKMFPSDVIEAMGTAAAEVISELREDEDELVRRITESFISYRDSVGGYMTYADNG
QMNARASVMGY
>gi|99078613|ref|YP_611871.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MVEKRRHSWMEIRDSIRSMILNSTYGPGDKLPRDEEFALQFGCARSTVHRAMRDLAQSGVVERKRRGGTT
VRRDPVTRATLDIPITRLEVERRGSQYRHRLLRKSVQPTPPAIMANFDLSEPRNMLRVEALHLADNRPYI
FEDRWICLETVPEIADVDLTRENANEWLVRNRPYSRCDLRLYARKATPSDQDVLQSHDGDALFVMERTTW
IGAAPISSLCAVAHPGYQLFTQG
>gi|99078614|ref|YP_611872.1| Crp/FNR family transcriptional regulator [Ruegeria sp. TM1040]
MQIADWTAHFQGTRALPDATRTRLEQVSHAQTYKKGQEVFGPANLPDSLLFLLKGTIRVSQSSDNGRDIV
LYRVDAGESCVLTTACMLAEEAYNAEGIAETDVTVIQLPKSTFDQLVAEEPAFRSFVFAAYSRRLIDLLR
VVDDVAFGRIDVRLADRLLTLAGADSEIAATHQQIASELGTAREVISRVLHDFQKREMISQSRGRITILN
RVALRAMAESV
>gi|99078615|ref|YP_611873.1| hypothetical protein TM1040_3644 [Ruegeria sp. TM1040]
MAMNVGTLDRILRAALALGLLYLALMSDLALFQSAIVRYGAIAVAVVMLVVAMTRVCPFYTIFGLKTCRR
>gi|99078616|ref|YP_611874.1| protein of unknown function DUF395, YeeE/YedE [Ruegeria sp. TM1040]
MQTDFTPVLSFGGGTLIGLAAVLLMLGLGRILGATGILSGTVFVTSREELSWRVALILGMLLAPGAIYFA
TGVMPAISVPSSPAMIVIGGVIVGFGASLGSGCTSGHGVCGLSRLSLRSIVAVPTFMATAAITVFLIRHV
FGG
>gi|99078617|ref|YP_611875.1| protein of unknown function DUF395, YeeE/YedE [Ruegeria sp. TM1040]
MRFIYTVLTGLVFGVGIALSGMMNPAKVLNFFDIAGGWDPSLAFVMGGALTITFIGYRLVWRRQAPLFEG
RFQIPSSTLIDSKLVGGAALFGVGWGIAGFCPGAAIPALGTGRWEVALFLLAVIGGFFLRRLLSNLPSNV
TS
>gi|99078618|ref|YP_611876.1| beta-lactamase-like [Ruegeria sp. TM1040]
MAHYPVNMDVKPEVQAFFDEATNTISYIVKDPASSACAIIDSVMDIDYAAGRITYEHADALIDHITSQGL
QLEWIIETHVHADHLSAAPYIQEKLGGKIAIGAKIMVVQDTFGKIFNEGTEFQRDGSQFDRLLEDGDTYM
IGSMQAFAMYTPGHTPACMVHVMGNAAFVGDTLFMPDGGSARADFPGGDAGTLYDSIQKVLALPDEMRLF
MCHDYGPNGRDIAWETSVGDEKAHNIHVGGGISKEEFVKFRTQRDAQLDMPKLIIPSLQVNMRAGEVPTD
KDGHPMLKVPLNGL
>gi|99078619|ref|YP_611877.1| sulfate permease [Ruegeria sp. TM1040]
MPSFRQYFPILVWGRDYDKSALSNDLIAAVIVTIMLIPQSLAYALLAGLPPEAGIYASIAPILLYAVFGT
SRALAVGPVAVVSLLTASAVGQVAEQGTAGYVVATLTLAFLSGSFLVLMGVLKLGFIANFLSHPVIAGFI
TASGILIATSQIKHILGIRAEGHTLPEMLYSIALRLGEVNWITLLIGASATGFLFWARKHLKQTLHGMGT
PPLLADILNKAGPVAAVVTTTVVVWGFDLAEKGVKIVGEVPQGLPPLTMPGFAPDLIGALLVPAILISII
GFVESVSVAQTLAAKRRQRIDPDQELIGLGAANLGAAFTGGYPVTGGFARSVVNFDAGAETPAAGAFTAI
GLALAAVALTPLVYYLPIATLAATIIVAVLSLVDLSILKKTWTYSHADFIAVAATILLTLGLGVEIGVAS
GVILSVVLHLYKTSRPHVAEVGLVPGTQHFRNIDRHNVQTDPRLVSLRVDESLYFVNARFLEDLIQKRVT
EGCAIKHVVLMFSAVNMVDYSALESLEAINHRLKDMGVGLHLSEVKGPVMDRLQRSDFIDEMNGKIFLSQ
YEAWANLTAGAQQGAADTGQGDQLRCGA
>gi|99078620|ref|YP_611878.1| phosphomethylpyrimidine kinase type-2 [Ruegeria sp. TM1040]
MAHIALTIAGSDSGGGAGIQADLKAMSALGVYGASVVTAITAQNTRAVTAVHSIPLEVISAQIEAVLSDL
DVRAIKIGMLATPGIIGCVHEALGAFSGEIVLDPVMIAKSGDALLAADAVDSLRKELVPGATVLTPNLPE
AACLLDQPVAQSTDEMISQGLALCELGAQAVLMKGGHGAGEICEDILVSGGEVRACFRAQRQHTKNTHGT
GCTLSSAIAAGLSKGLTLPEAVQEAHEYLQGAIAQADALAVGHGHGPVHHFHAFWSA
>gi|99078621|ref|YP_611879.1| glycine oxidase ThiO [Ruegeria sp. TM1040]
MMLYSVIGAGVAGLAVATELVARGARVQVFDPAGPPGAHGCSWWAGGMLAPWCEYENAEEPVLRLGQEAI
QWWQDRTQVTHRGTLVVAGRRDIPDLRRFARRTEGFRQIDHDITELEPDLVGFSQALFFEEEAHLDPRRA
LADLYQRLMQEGVVFHAECAPDNLENVIDCRGLQARDCLKDLRGVKGEMLVIRCPDVTLTRPVRLLHPRM
PLYVVPRGDGLYMLGATMIESEDRARITARSMLELLSAAYALNPGFGEAEILEIGVDLRPAFPDNLPRIR
RLKGRIYANGLYRHGYLLAPALARGVADLVLNNIHSEMVDEDHC
>gi|99078622|ref|YP_611880.1| thiamine biosynthesis protein ThiS [Ruegeria sp. TM1040]
MKITVNGAAVEVTATTLAALLEERGFSGRVATAVNETFVPATQRATQPLSDGDRIEILAPMQGG
>gi|99078623|ref|YP_611881.1| thiazole synthase [Ruegeria sp. TM1040]
MKSFYGVELPNPLMLGTAQYPSPAVLEQAFRQSGAGVATVSLRREGAGGAGASFWKLIADLGVHILPNTA
GCHTIKEAVTTAHMAREVFDTNWIKLELIGHTDSLQPDVFQLVEAAKILTGEGFKVFPYTTEDLIVAERL
LSAGCDVLMPWGAPIGSGRGLNNPYALRAMRAEFPEVPLVIDAGIGLPSHAAQAMEMGFDAVLLNTAVAR
AGDPPMMARAMMAAIEAGQLAHAADPIEARDMAEASTPVIGKAFLS
>gi|99078624|ref|YP_611882.1| thiamine-phosphate pyrophosphorylase [Ruegeria sp. TM1040]
MTLDRFYPIFDDANWLQRMLPLGVKLVQLRIKDQPIDVVQQQITRSRGLCRQHGAVLVVNDYWQLAIELG
CDWVHLGQEDLDDADLKAIRAAGLKLGVSTHDEDELDRVLALSPEYVALGPVYPTILKHMKWHEQGLPRV
REWKTRIGSIPLVGIGGMSVERAPGVFEAGADIVSVVTDITLNSDPEARVRQWVEATR
>gi|99078625|ref|YP_611883.1| UBA/THIF-type NAD/FAD binding fold [Ruegeria sp. TM1040]
MSRYARQMMLPEVGAVGQARLSTARVLVVGAGGLAAPVLPLLAGAGIGHITLIDGDVVSLSNLHRQTLFQ
ETDCGRPKAEVAAQRCSALNSEIEIVAVAHALTPANAPLVLADVDLVLDCADSYAVSYLLSDLCHAQKTP
LISASVLGSGGYVGGFCGGAPSLRAVFPDAPDNSASCETAGVYGPVVGMIGALQAQMALNILLEHVPSPL
GQMVQLDCRSYRSTTFRFDHAPEPEVSFPFVAIEELQADDHIIELRADAPLLHPKARRSDAEMLLQTLPN
PQKRLVLCCATGLRAWRTAERIHPIWPGEIVLVAASAS
>gi|99078626|ref|YP_611884.1| NLPA lipoprotein [Ruegeria sp. TM1040]
MKTLIAALAMLAATPAMAQDRMTLLLDWFVNPDHGPIIIAEENGYFAEQGLEVEVVAPADPSAPPRLVAA
GQADLAVSYQPQLHLQIHEGLPLKRVGTLVATPLNCLLVLKDGPIQDLSDLAGKKIGFSVAGVEEAVLQA
MLGQHGVSSDDIEMINVNFSLSPSLMSGQVDAVIGAFRNFELNQMEIEGVEGRCFYVEEEGVPSYDELIY
VANPERMDTDKIARFLAATEKATQYIVNNPEKSWEIFAATSTELQDELNARAWVDTLPRFALRPAGFDAG
RYTRFEAFLKDSGMIDSLNPVDAIAIDVTAP
>gi|99078627|ref|YP_611885.1| TenA family transcription regulator [Ruegeria sp. TM1040]
MSEPYGKAFSLMRAEAEPAWRAYTHHAFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETH
SEMLAAVGTVNALVAEEMQLHIGICEASGISQEALFATRERAENLAYTRFVLEAGYSGDLLDLLAALAPC
VMGYGEIGKRLTAEATSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAEFTSSPRWSRLCQTFHT
ATELEVGFWQMGLTP
>gi|99078628|ref|YP_611886.1| ABC transporter related [Ruegeria sp. TM1040]
MSLAPSITIKGSASIDGTALFAPVSLTLDAGRWTCLLGGSGVGKSTILRLVCGLPTGAEFHGTITASDGG
ALPSRVAYMAQDDLLLPWATIRENVQLGARLRAEPTDRLDLDEILARVGLSDHATKHPAELSGGQRQRAA
LARTLVEDKPVVLLDEPFSALDAQTRALMQELAVEVLQDKTVLIVTHDPSEAARLGHQIAIMTPNKLMTC
PPPATSVPRPVEALETLKCQAALMRLLRGQGA
>gi|99078629|ref|YP_611887.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MKPWPVLAATVFALFLWQAIVSLTGLPKFILPGPVIVAQAWWDNLAVIAENTLVTAAEVLIGLVIGVALG
VLTALHLATSRTARLLVQPILVFTQALPVFALAPILTLWLGFGLWSKIAMAVLIIYFPVTASFFDGLMRT
PQGYLDLARTMQATPLRVLWHIRVPAALPSLASGIRLAAVYAPIGAVIGEWVGASRGLGYLMLLANGRAK
TDLMFAAMLTLGVFSVLLHLVVRRLTRDLGRHVRS
>gi|99078630|ref|YP_611888.1| BioY protein [Ruegeria sp. TM1040]
MATKDIVLIALFAALIAALGVVPQITIPMAGGVPITAQSMGVMLAGALLGAKRGGLAVVLFLVLVAVGLP
LLSGGRGGAGVFFGASGGFLIGFPIGAFMIGFLFDRHTGQPGFVPSLIYVLIGGVGVIYLLGVPWLAQVA
EISLSQALAGSLAFVPGDLIKAVLTVLIAREVRKAMPHL
>gi|99078631|ref|YP_611889.1| cobalt transport protein [Ruegeria sp. TM1040]
MLDLYVDGRSVLHRLGPGWKILALAVSGTLLFAVDHILLTLGWLCLTLALYLVAGLPLSRAWQQIRPALW
IFALIFLAQILFNSWQLGLFVVIRLAVLLMMAGLLTLTTRSSDMIDGIEAGLRPLQRLGLRTKGISLAIS
LTLRFIPVLTTVVQDVREAQSARGLDRSLFAIAIPSIIRTLRMSEEISDAIDARGF
>gi|99078632|ref|YP_611890.1| ABC transporter related [Ruegeria sp. TM1040]
MIEVQDVSLTLDDRPILRDINLTLREKRIAIVGSNGSGKSSFVRLLNGLRLPSSGRVCVDGQDTRTEGRK
LRRRVGFVFQNPDNQIVFPIVEEDVAFGLKNLGVPPKERDARVTAVLERYGLQEMRKQPAHTLSGGQKQL
LAIAGVLVMEPEYVVLDEPTTLLDLRNTLRVSQAISALEQTAIMVTHDLDLIREFDRVIVFEQGRVFADD
VPNAALERYVEAMRDA
>gi|99078633|ref|YP_611891.1| molybdate ABC transporter ATP-binding protein [Ruegeria sp. TM1040]
MSFDVDIALSQGQFRLDAQFSVPGGLTVLFGRSGSGKTTLINAVAGLIAPERGRIQIGQRVLYDSGRGVA
LPAHKRRLGYIFQDSRLFPHLSVQQNLLYAHRFLPRSSRTADPDRIVDLLGLGALLQRRPAQLSGGEKQR
VAIGRALLAAPELLLADEPLTALDEARKLEILPYFERIRDELKVPVLYVSHAASEVARLASHVVVLDHGR
VTQVGSASGVLSDPAIVPTGVRNVGSVLTAELFLQHSDGLSELRINGLELFVPRIERPIGTVMRLRVAAH
DIILSNTRPEGLSALNILPGTITAIRAGEGPGALVTLETAGGPMLARVTQRSVATLDLKVGKAIYAIMKS
VAIAPQDIGTDGL
>gi|99078634|ref|YP_611892.1| molybdate ABC transporter permease protein [Ruegeria sp. TM1040]
MLGYGPDEIQAILLSVKVGFWAMTLSLPLGILTAYALARWNFPGKSLLNGLVHLPLILPPVVTGYLLLLL
FGPAGPMGRLLANFGISVAFKWTGAVLAAAIMGFPLLVRALRLSFELIDPKLERAASTLGASPFWVFCTV
TLPLALPGVIAGMVLAFAKAIGEFGATITFVANIPGETQTLPSAIYAFLQVPGAETAAIRLVIISVLISF
AALLLSEALNRRLAKRLATT
>gi|99078635|ref|YP_611893.1| molybdenum ABC transporter, periplasmic molybdate-binding protein [Ruegeria sp. TM1040]
MDDIVSPMSHQLWKCFMKSRQFRKWSLIALFVAALTSCFATASVAADPLRIFAAASLKTALDEIAQNFSE
LHDTEVSVSYAGSSALARQIGLGAPADAFISANGAWMDVLEEQGHVRVDSRRDLLGNRLVVIAAKGAAPL
SGLNALPEKLADGRLAMAQINAVPAGLYGKAALEKAGVWPALTRHVAQTDNVRAALALVATGATPYGIVY
LTDATADARVSVVFNIPEDLHPPIVYPAAAVSDNGLSPVFLDHLQSTPAQSLFRSQGFVPMGAP
>gi|99078636|ref|YP_611894.1| hypothetical protein TM1040_3665 [Ruegeria sp. TM1040]
MSANEDSNAYWAANVRLILISLVIWALVSFGFGIILRPLLSGISVGGTDLGFWFAQQGSILVFLALIFFY
AWRMNQLDKEHGVDEE
>gi|99078637|ref|YP_611895.1| Na+/solute symporter [Ruegeria sp. TM1040]
MDQFTLNLLFVGASFALYIGIAIWARAGSTSEFYAAGRGVHPVTNGMATAADWMSAASFISMAGLIAFTG
YDNSSFLMGWTGGYVLLALLLAPYLRKFGKFTVSEFIGDRFYSPTARLVAVICLLVASITYVIGQMQGVG
IAFGRFLEIDAFWGLLIGACVVFAYAVFGGMKGVTYTQVAQYCVLITAYTIPAVFISLQLTGNPIPALGL
FGSTESGEPLLAKLNQIVTDLGFAEYTAAHGSTINMVLFTLSLMIGTAGLPHVIMRFFTVPRVSDARWSA
GWTLVFIALLYLTAPAVGAMARLNISELMWPNGTEAQAVSVEQIETDPEYAWMATWQKTGLLGWEDKNGD
GRIQYYNDANADLQAKAEANGWKGNELTNFNRDILVLANPEIASLPGWVIGLVAAGGLAAALSTAAGLLL
AISSAVSHDLLKGQLTPNMSEKSELLAARVSMAAAIVVAVLLGLNPPGFAAQTVALAFGLAAASIFPALM
MGIFSTRINNSGAVAGMLAGLVVTLLYIFLHKGWFFIPDTNSFTDADPLLGPIKSTSFGAIGALVNFAVA
YVVTNMTKETPQHIKDLVESVRVPRGAGQAVDGH
>gi|99078638|ref|YP_611896.1| cyclic nucleotide-binding protein [Ruegeria sp. TM1040]
MPLPAALTQFLASVHPYDSLPDPVLAHVAQQCALHNVAVDERLFSLGDTVSSLYIIVSGEIEITDEAGVQ
LSILGSRNSFGERALLRGERASRSARATSASEVIALPAEVFHQLIDQHESVARFFDRRRPPPRTGNSLAS
LTVEQLMTRAPVTCTPETPIRDAAALMHRHHISSICICDPDGFHGIVTLRDLNSKVIVGGIDPLEPISGI
MTEDVLTLAPQALVTDVLHLMVERNIHHVPIVNERGLLGIVTQTDLTRAQALSSADLVGRIARAEDASEM
ARATAQIPQLLVQLVEAGNRHEVITRLITDIADIATRRLLSLAEAQLGPPPVPYLWLACGSQGRQEQTGV
SDQDNCLILSDDLTDAQMPYFAKLARFVSDGLDRCGYFYCPGDMMATNPRWCQPLRVWRGYFQTWIAKPD
PEAQMLASVMFDLRPIGGDKSLFDHLQSDTLEAAAKNSIFTAHMISNSLKHQPPLGLLRGLATIRSGDHR
DELDLKHNGVVPVVDLGRIYTLQGRLRPVNTRARLEAALAAGLLSASGGADLLDAYDLIASMRLELQTKQ
IKAGQAAGNYLNPSSLSDFERSHLRNAFVVVKTMQSAVGSGTGTLG
>gi|99078639|ref|YP_611897.1| hypothetical protein TM1040_3668 [Ruegeria sp. TM1040]
MFVELIATIVAGIACAGLVMLLNILTGRRLPKWMMPVAAGLGMIGMTISNEYTWYARTTESLPKGLEVAM
TVEEQGWLRPWTQIWPYTKRFVAVDVATARTHQDLPDQKLLDLYFFGRWSPVNQAPMLFDCAEARSALLI
DGAEFGADGTVADADWRAMPKDDPILAKVCTA
>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
MLRSLSLRLRIFLFFCLLAVGAIALAAVALGFVWTRSDSEWTASELTTVILLFGFLNTGLVLGIWLLFDE
NVARPIEGLSTSLRLRAHSGIEDSIKAQAAQYLGDLAPAARALSDALAASGDQPPEQTQRLLQERERLTA
LLSEIPIATILVNAAGEIALYDAQAGAILSRIAAPRLGAPLSNYFDLTPAIGACARADRRLVAGHVTVPD
CNHAETFNLQIKSLGAEGDVIFLEADTRAERDTLSPPLVFDFDLLDQKLEGTITARRLSELNFVVFDTET
TGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDADVAQSPRIEAVIPAFHDF
AQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHT
AKGDARATAEALIRLLPLLQGKGIETFGQLLKETSKFGRLLRDINSDHVRNAPEMSDSP
>gi|99078641|ref|YP_611899.1| alpha/beta hydrolase fold [Ruegeria sp. TM1040]
MPINSDFPAPQRIKLNGITLEVFEAGSHNRGNPIVLCHGWPELAYSWRAQIPALVAAGYHVLAPNQRGFG
ASSRPADVTDYDITRLTGDLAALLEHFGYEAATFVGHDWGANVVWSMALLHPERVVRLINLALPYQTRTP
TPWIEFIEALFGADHYFVHFNRQFGVADAILDQNADQFLRNLFRKNLTMVPSEPGMMMINLARAETPLGD
PLISAEDLEVFVSAFKASGFTPGINWYRNMDRNWHILAEIDPVIRHPALMIYGLQDPIPPSENLSEFVPN
VAIRSLDCGHWIQQERPEETTQVMLEWLKAQDHAG
>gi|99078642|ref|YP_611900.1| helix-turn-helix, type 11 [Ruegeria sp. TM1040]
MKQRARQDAIVRTLRRRGSTTLAALGEEVDASRSTVLRDLSALRDAGYVIHAEQGRGGGVSLDPSSVQTT
ARLSVAEVFALIMGVASMRAAGVIPFSSLADSGVAKIEKALPPDKLRELRRMLDRLYVGPLASQVDISDL
KEMVPELLPAFEAAFLGQRRLRFQYCDAKGAWTSREIEPQAMLVLPPLWYLVAWDPSRNDFRHFRADRIS
APEVIETTRFRPRNVTFAAGVRPIRYA
>gi|99078643|ref|YP_611901.1| zinc-binding alcohol dehydrogenase [Ruegeria sp. TM1040]
MQTIKAAVCHSFGSALEIEDVVLASPGPGEVEVTLDAVAICHSDISFAEGAWGGPLPAVYGHEAAGRVSA
LGRDVDGFNIGDDVLVTLIRACRHCSACTSGQPVYCATPYDGLQGPLSTPSGAPLYQAMACGAFAEKVVV
SGSQIVAIPADMPKDVAALVSCGVITGVGGAVHSAKLRAGEDVVVIGAGGVGLNAIQGARIAGARRIVAV
DLSAEKLDVARDFGATDTVLASDLKPWRAAIDALGGKGAEVVLITVGAIPAYAQAPRYLAPGGRAVMIGM
PHSGDTAPYEPVVMAALGQGLQGSKMGDVVLQRDVPWIIDLYQQGRLKLDELISGRWSLLQINEAIADTK
TGSARRNVILFDHDHP
>gi|99078644|ref|YP_611902.1| mandelate racemase/muconate lactonizing-like protein [Ruegeria sp. TM1040]
MKLQDLDIIITAPPAPGWGGRYWTLVKLTTDTGVVGWGECYASTVGPTAMRAVIEDVFARHMQGENPENI
ELMFRRAYSSGFTQRPDPTVIGAFSGLEIACWDILGKDRNRPVHALLGGRMNDRIRAYTYLYPLPDHDIS
AFWNSPEMAAESAEDAVNRGYTAVKFDPAGPYTMRGGHMPAMSDVSRSVAFCKAIREAVGDKADLLFGTH
GQFTPAGAIRLGQALEPYSPLWYEEPTPPDSVGDMARVAKNVRIPVATGERLCTKAEFAAVLQAGAAEIL
QPALGRAGGIWEMKKTAAIAEVFGAQVAPHLYAGPVEWAANIHLAASLPNILMAETIETAFHDRLIKGSI
RVEEGFVTPPQSPGLGIEVDEELARQHPFKGDDLHLNMQETPCDYANGNAFEGGAPPIEG
>gi|99078645|ref|YP_611903.1| ArsR family transcriptional regulator [Ruegeria sp. TM1040]
MMGNASDAAALLKALAHEGRLMILCYLAAEGELSVGALEELLGKRQAAVSQLLSRLREDRLVIARRDGKT
VYYSLADGPATEVLETLHNIYCS
>gi|99078646|ref|YP_611904.1| 5-carboxymethyl-2-hydroxymuconate delta-isomerase [Ruegeria sp. TM1040]
MKLFRYRTPEGVRPGLIDAQGVARDLSGHVADVTSETLGASVLETLQSVDQSALPELTGPIDYAPCVGAI
GKFLCIGLNYSDHAEEVGATPPEHPILFMKANSAIVGANDDVRLPRGSKASDWEVELGVVIGKAAKYVSV
EEALDHVAGYCIVNDVSERDYQLHLTGQWTKGKSCDTFGPIGPWLVTADEVSDPQDLALSCDVNGTRMQT
GNTNKMIFSVAEVISHLSQLMTLHPGDIIATGTPPGVGMGQKPEPVYLKDGDVMELEIQGLGKQRQVVRA
DD
>gi|99078647|ref|YP_611905.1| cyclic nucleotide-binding protein [Ruegeria sp. TM1040]
MLHHCLKRTNRATHVKTLLSSFDDRDLTLTLEPRSRPIERSLFQFIWKYSKRDQLVLLVVTACLFPLLYL
TLELPKRIINDAIGAQSSTIEVLGQQVDQLTYLWILCGAFLLAVLAHGLTKMRINTMKGVLAERMLRRFR
YSLIARVLRFPQPYFERTSQGELVSMITSESEPMGGLMGDAVSQPVLQAGQMLTILYFLFAQNFWFGLAA
VALIPLQGWLIPLLQRRINLLNKKRIQQVRALASEIGESAAGASTLRVNGGWRYRMARVTDRLGRLYEIR
FEIYQKKFFMKFLNNFITQLTPFFFYAVGGYLVLEGKVSLGALVAALAAYKDLASPWKELLTYYNQTQDM
SLRWEVILERFAPPDMVDERLMEGEPEELPHLDGDIVLKDVSVRDADGNLILEELSATFPKGELIGIAAP
SEEDRRALAEVLTREVLPASGTVTLAGHDIRELHQMVLATRIGHATSRPALFKGSFGENVLMPLRVRPLE
DPSDARAVRDAIRAGNSPDPFGVNWVDPKIAGFEKPEELRDWWLRIVEGIGSDTALLRRGMDQVFDREEH
PKLAQALIDLRPRVQRALMDAGLDAFARFNNPAHYNPALPVVENLLYATRSVPITYELLREQTEFLQTLR
RIGLDKDLVALAQDVLEMLRQIFGMDGTVHPLFRKLGLEASDYEAALQLLQKVKSRGTEALEPEELAQMM
IVPFSISAEALGPAFSSEIENRILSLRDSHGRELLETLDDLFVPLNKDRFAPGFTVLENAIFGKISDNAG
ARAEDLRKTVAEVIDAAGVREMVVELIFDLPVSVGGQGLGQSFAEPLAFCRASIKRPDILILDGALASFD
RATRRAMQDNLRDLLPQSTLIFLEPAFKDPDRFDHYFEMRQGRLKDERAAERGAADEDSASAADLSRKLR
ALESTELFSGLNRRQLRLLAFSARWYEATPGTAVFHKDDAATDGAYMIIEGEAGLYLPAEDPGTKSQLIA
KVGPGRLVGELGLIRKEPRALSMIAESDLTCLRIGEEEFLAVVENDANTAFKLLQVVAGYVSS
>gi|99078648|ref|YP_611906.1| hypothetical protein TM1040_3677 [Ruegeria sp. TM1040]
MPEHVGTVLLLICLFEVKHMFADFYLQTKKMLSGRCQYFHPGRAQHAGVHALASVVVLFVMGSPAWFIAL
ICAVEWFIHFNIDFWKAHHTECNKLDPTQGAFWRAMGTDQLLHHLTYVGMTAAWAAVCL
>gi|99078649|ref|YP_611907.1| ThiJ/PfpI [Ruegeria sp. TM1040]
MPRLAVILTQGFADWEYGVLCGLGRAYFGLDVRFVTPVPGDVISMGGLVARVSDGFELLDSWEPDAVVVI
GGTLWEHPDAPDLSGLLEGAQARGAVLAGICGGTLALARAGVLNTLRHTSNDASFLGLHAAGYAGAALYV
DQPKAVRDGKVVTAAGTAPVSFAAEIMTALDVPLETVQQLKSMLGAEHIGTQARSV
>gi|99078650|ref|YP_611908.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
MRLDDRDRRILTLLQEDSRMSNADLAESVGMSASALWRRVRSLEEAGVIKRYGAVVVPQAMGLNFEALVQ
VNLTRHAPEHLQEFIRAVEGNPHVVECYATTGQADYHLRILAPDLEAYNQFLEQFLFQLAGVASAQTHVI
LKTVKRDTPVVP
>gi|99078651|ref|YP_611909.1| 2-oxoacid ferredoxin oxidoreductase [Ruegeria sp. TM1040]
MTELSHAFETYQLEDRYARTKGRVFLTGTQALARIMLDQARRDRAAGLNTAGFVSGYRGSPLGGVDLEFW
RARARMEEAGITFMPAVNEDLGATAVLGAQQAVLDPDCEVEGVFSMWYGKGPGVDRSGDALKHGNAYGSS
AKGGVLVVAGDDHGCVSSSMPHQSDVAFMSWFMPVLNPADVGEFLSFGEYGIALSRYSGTWVGFKAVSET
VESGRSVELPEDRDFIRPELPDYPGGLHIRSSDLPSPEIETRIRAKLQAVRAFAEANPIDRRIYDLPEAR
FGIVTTGKGYLDLMEALRLLDLNEDTCRRLGIDIYKVGMVWPLARAEALRFVKGKEEVLVIEEKRGIIES
QFKEYFYDWPGDKPKKMVGKYHAAGEPLIPWVGELSPLMLVPVVAERLDRFFPELKLRDKARALTEQPPN
LLNIPGATRTPYFCSGCPHNTSTKVPEGSTANSGIGCHVMASWMGRNTAGYAQMGGEGVPHVVASKYNGG
KHVFQNLGEGTWYHSGSLAIRQAVASGANITFKVLYNDAVAMTGGQPVDGPVSVAGIAQAGRAEGVERIA
LISDDIAKFTRSDFPAGTSFHDRADLDLVQRELREIKGVTLLIYEQTCATEKRRRRKRGKMEDPKRFAYI
NDLVCEGCGDCSVESNCLSVEPKDTPFGRKRKINLSSCNKDFSCLNGFCPSFVTVEGATRRKRELKDLDP
AALTVDLPAPDLPALGKPFDLLVTGVGGTGVVTVGALITMAAHLEGKGSSVLDFTGFAQKFGTVLSYIRL
AKSPEEVHQVRTDLCAADAVIACDAVVSSAPKASAHYREGSRVALNLAEMPTGDIVLRRDASLDIPARAR
AVASVVGAGNVTALNANAIAETLLGDAVLANVIMLGFSWQQGLVPVSLTALQQAIVLNGVAIEKNQLAFA
IGRAMAAAPERLAAHYSETEATEESLQDLIKRRVSFLTAYQNEDYAGIYSDLLQRLHRALPANHADRLTA
SAARSLFKLMAYKDEFEVARLMSGKSFRDELDRTFAGDFKVNYHLAPPLLNIKTDARGRPAKRAFGQWMT
PVLSLLSKGKALRETPFNPFGYHSEARMHRELRDWFQNMLEDIISHPTALAPDMLDTTLKAPMDIRGYGP
VREAAAQKVKQEVDALRLT
>gi|99078652|ref|YP_611910.1| TetR family transcriptional regulator [Ruegeria sp. TM1040]
MPPKPVLHRDNPDAEPLIGNIKVTREDWLKMGLDVLIRDGEERVKVLALAEAMGVSRSSFYWYFKSRQDL
LDALLTCWEETNTAGLIRQANAPAERITGAVLNVFRCIANPNLFDTALDFAIRDWARRSEPVRARMRAGD
DARVAALTMMFARYGCAEMEAITRAKVLYYMQLGYDMAEPEESYAYRLSMTPEYLKVFTGQTPTEAELRE
FEDYSRQFWRDVSP
>gi|99078653|ref|YP_611911.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like [Ruegeria sp. TM1040]
MRPLLSVENLSIGFGRDAPVVQNVNFEVNPGETLALVGESGSGKTISCRAVLRILPRTARLHSGRMILRG
DQDELDLARISERQMRHDVRGNRIAMIFQEPMRSLSPLHRIGNQVVEIIHLHRSVSEEAAKREVLECFER
VGFPDPERTWRSYPFELSGGMRQRAMIAMAMVAKPDLLIADEPTTALDVTTQAQVLGLMKDLQRETGMAM
VLVTHDLGVVANMAEQVVVMHKGRVMEAGPAEPILRAPAHPYTKDLFEAAPKIPPAISPAPQEQQDLILE
LRNVTKTFTMRSGKSWSKPTLVRACDSVDLRLPRGKTLAIVGESGSGKTTAARIALGAETVDAGGEVLFR
HAAGAEALEVHDMDRDARRAFQRQAQMVFQDPYSSLSPRQRIFDTLAEPLEIHGIGARADHKARAAEMLR
LVGLPGDMLSRYPHAFSGGQRQRLSIARALMLDPALLVCDEPTSALDVSVQEQILTLLEEIRDARQLSYL
FISHDLAVVARIADEVAVMRRGLIVEQGPPEVLFHNPKHPYTKALIAAQPVPDVDRPINLKLVAQGAGAP
ESWPEAFRFAGENAPPLVPLDPGHKVRCHV
>gi|99078654|ref|YP_611912.1| extracellular solute-binding protein [Ruegeria sp. TM1040]
MSNARPLLSFTSALAFLLLPLATVAQPTVQESAFWSHEVSAGDLPPAAERIPAEPLVVNLAAKGRSPGIP
GGTLNTMVTRSKDIRQMVVYGYARLVGYNENYELVPDVLQSFESEGDRKFTLHLREGHKWSSGDPFTSAD
FEYWWTHIANNRELNPTGPPDFVRVEGELPEVTFPDDTTVVFEWSTPNPSFLQVLAQAVPPFIYRPSAYL
KQFHKDFADPEALEEEIDYARVKSWAALHNKRDNMDKFDNPDLPTLQPWINATAGKKIRHQFVRNPYYHR
IDENGVQLPYIDTVEMEIVSGGLVAAKSNAGEADLQARGLDFRDIPILRKGEANGDYRTELWSSGTASQI
AIYPNLNAADEVWRATLRDVRVRRALSVAINRAAINKSLYFKLAKPGAMTVLEKSPFFEQELRDAWAQYD
PDLANTLLDEAGLTERDGYGIRRLPDGRPMELVVETAGERQEVENALQIITDDWRDVGVKLVMRPLDRDI
LRNRVFSGTTMASVWYGWDNGLPQSYTSPAYLAPTDQVFLSWPKWGQYYQTSGAVGEAPDMAPAQRLMEL
LDDWNKAPDANKRAEAWHEMLEIHAENVFAIGLVAAAPQPVVVSNRLRNVPKTAIWAWDPGAHFGVHRMD
EFYFEDGEG
>gi|99078655|ref|YP_611913.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MEILRYALYRFGTMLLTLLLVSVLIFWIINLPPGDFLSNQIAELRATGQEAGVAKAEFLRKEYALDRSLA
EQYLIWMGFWPGPHGFSGMLQGNFGWSFEFDRPVAEIVGDSLWLTVLVNLAAVLFVYIVALPLGVLAAAK
SRTMIDYTAAFIGYLGLATPNFLLALILFYYGHQYLNLPIGGLMAPEFEGEPMSWEKVKSILIHLIVPTF
VIGTSGASAMMQRLRANMLDELGKPYVETAVAKGMRPSRMLAKYPLRVAFNPFVADIGNLLPAMVSGSVL
VSVVLGLQTIGPVLLQALKSQDMFLSGFVLMFVALLTLIGTMISDVLLVLLDPRIRYEGRKS
>gi|99078656|ref|YP_611914.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MSEKHPDGRFVDDAPYDPQASIRELERKDLDAPNWVLIWRKFKTHRLGLISGIFLLFCYVMLPFVGFIAP
YGPNERNAEHLYSPPQSVNFFHEGEFLGPFIYPLTSEADLETFQWVVKPDYDNPQQIRFFCEGAEYRLAG
LIPANTHLFCAPEGATLFLWGSDRLGRDIFSRILFGAQLSLTVGLIGITVSFVLGIFFGSVAGYFGGKID
WVINRAIEILRSLPELPLWLALSAAVPSTWSPVAVFFIISIILGILDWPGLARSVRAKFLSLREEEYVRA
AEMMGASSGRVIKKHLLPNFMSHLIASATLSIPAMILGETALSFLGLGLRAPAVSWGVMLNDAQNLANIE
IYPWTAIPMLPIIVVVLAFNFLGDGLRDSLDPYQQ
>gi|99078657|ref|YP_611915.1| L-carnitine dehydratase/bile acid-inducible protein F [Ruegeria sp. TM1040]
MSMFDALPPLDAYHVVGEGQRPSVYAVSELANDCLGAVGLEMAKLIEVLGLAPGAPDVTVDQRLASLWFG
YSFRPVGWEMPSLWDPIAGDYPCADGWIRLHTNLPHHRAAALSVLGCNADREGVAKAVLTWQGDALEAAV
VGAGGVAAAMRSREEWLAHPQGAAVCQEPLVDWIKPRRVVLRARPEASAARPLMGVRVLDLTRVLAGPVS
TRTLAGFGAEVLRIDPPDWDEPGVLQDISLGKRMARLNLRTEAGRAHLRALLAEADVLVHGFRPGALDNL
GLDLATRDAIAPNRIEVTLNAYGWTGPWANRRGFDSLVQMSAGIADAGRDWAGAQKPTPLPVQALDHATG
YLMAAAVLSALSAAARQEPVGVARLSLARTAEALVAIPKRLSGPEISTAEPCDFATCEEASGWGAGLRLS
PAVKINGCEMGWDMPAQPSGTHPPQWNEPQT
>gi|99078658|ref|YP_611916.1| MscS mechanosensitive ion channel [Ruegeria sp. TM1040]
MSRLTALLRLWLIAATIGLLGSVPADAQSTLVSQGTSEEARSQSDLADAIRQAAEAGVGVVIVDSSGRAL
SGAEVVAQAGSAMEEEPGVMGGASSMMKAQSELRDFRSKLNERLKSLPSSYIEMAYILRATSPDGRIITY
VKVVLITTVLLLIGRWLSTEIYGKRLIKSYVVSRIEEKPEGYAGKMPFLFIRFAAGLGGTLFAMIFALIV
TLLVFGPSGDVSIEFTSLAVYLTFFVARTISDLWRMVLSPYLSQYRIPSLSDRDAKRLYFWLSGLATFDF
VAVMVSTWVQDFGLNYNIYALTYSLLMLASSLLAILLVLFNARAISGAIRHVGDAHVVAWPNRLLSWVWA
PIVILYIAFGWLALTFDLVLENPSALPPNMGLFAVLTSILVVYGLINYVIEQFTSRRRIIETTDDTTQSD
DENSEDAQEKTTARHPIATYKDLARRAAGILAFLVGAVSLIFIWNPEFAMEDAPWLDRAIDVLVILFIGY
LVFHIARIWIDSKIEEETQDQPDGELGDEGGGSSASRLATLLPLFRGAILAVVVVTIILIVLMEIGINVS
PLFAGAGVVGLAVGFGSQTLVRDIFSGAFFLIDDAFRRGEYIDIGSVKGTVEKISVRSFQLRHHLGALHT
IPFGEIQVLTNYSRDWVIMKLPLRVTYDTDVEKVRKLIKTLGKELLNDPVIGHNFIQPLKSQGVIEMQDS
AMIIRVKFMTKPGDQWLVRKKVFQEIRDLFEREGIKFAHREVTVRVVDDTGEKVPEAKRDAALGAAQAAI
EDDLMDSNDGGDDR
>gi|99078659|ref|YP_611917.1| hypothetical protein TM1040_3688 [Ruegeria sp. TM1040]
MSASPLPRFGPSDRGPRILFYSHDTFGLGHLRRSRALAAAITSADPKASAMILTGSPVAGRFAFPNRVDH
MRLPGVIKRADGSYASRTMGMSIEETTELRAGLIRSTAEQFAPDILVVDKEPTGFRGELIPTLDLLQERG
QARLVLGLRDVLDEPEVLRAEWERKSALEAAETYYDEIWIYGLHDVYDPTAGLPLSKETQARMHWTGYLR
RDLGEVGEPPEQPYVLITAGGGGDGAMMVDLAISAYERDPTLTPRAMLVYGPFLSGDTRAAFEDRVAALD
GRVSAVGFESQIETLFAGAQGVICMGGYNTFCEVLSFDKPAVIVPRTTPRLEQWIRASRAEELGLVTMLD
ETRDGWTPEAMIGAIRALERQPNPSKAISDGLLDGLDYVTERVNALLQQLPREVSA
>gi|99078660|ref|YP_611918.1| glycosyl transferase, group 1 [Ruegeria sp. TM1040]
MTGKRPALAVLVKGWPRLSETFIAQELVALEAAGQPFEIWSLRHPTDTKTHPLHDRLQAPVHYLPEYLYD
APARVAEARTRAQTLPGYAAAYEVWRADLRRDPTHNRIRRFGQACVLAAELPPEVRGLYAHFLHTPASVA
RYAAIMRGLPWSFSAHAKDIWTSPEWELREKLSAASHGAAFGATCTGFGAKHLQELSDGTPVDLIYHGLD
LSRFPAPPARVLRSPNAPFHMMSVGRLVEKKGFDRLIAALALLPRDLDWHWTHIGGGGLGDLLQGMAEDA
GISARITWRGACDQPEVIDAMRAADLFVLPSRVASDGDRDGLPNVLMEAASQGLPILSTPVSAIPEFIES
GTHGLLSSDAPEALADAMLRLAHAPEEAQRMAKAALLRLRAEFGMDPGIAQLNTRLNAMLKDAG
>gi|99078661|ref|YP_611919.1| glycosyl transferase, group 1 [Ruegeria sp. TM1040]
MSASRIAFYAPMKAPTHPTPSGDRAMAQNLMELLQLGGAEVILASELRLYDKLGDPAHQQLLQRRAADEV
SRLVEELPPVDAWVTYHNYYKAPDLLGPAVAEARGIPYVQIESTRAKKRLKGPWAAFAQAAHEAADQAAV
IFYLTDQDRQTLERDRAGDQQLVHLRPFLPQDVLPPARAESDDAGRTLLAAGMMRPGDKLASYALIAETL
RHLEKTERASDWQLLIAGDGPARTEVDALMAPFGDRVRFLGQLGPEAMIDAYRAADLFLWPGVNEAFGMV
YVEAQSHGLPVVAQDRPGLRDVLLPGDYPAPDAGARALAARVVHLLADASERKDLGRRARDHIARHHLRP
AASATLWAALKPLFREHSA
>gi|99078662|ref|YP_611920.1| phosphoglycerate mutase [Ruegeria sp. TM1040]
MIRLALLRHGHTDWNRAGRIQGRSDITLDAAARQELAAHALPGTWKDADLWSSPLKRAAETAELVAGRAP
QTAAALIEMNWGDWEGQQGALLRADPQSGFRDIEHWGWDYRPPGGESPAEVWARVAPWIATLTRDTVAVC
HIGIMRMILARAHGWDFDGPAPFQVKRNRLFVVEISGDQLDPWTEPVRLEKRAS
>gi|99078663|ref|YP_611921.1| hypothetical protein TM1040_3692 [Ruegeria sp. TM1040]
MKVLIAVTHLLGTGHLSRALTLGRAFSRLGHAVTVISGGFPAPQLSLESVQIEQLPPLRSDGVAFTRLLG
EGGEVADEAYLARRVHQLETVVQAREPDVLITELYPFGRRALRAEFRALLEAAKALPRPPLILSSIRDIL
APPSKPQKAVDADAMIERYYDGVLVHSDPKATRLEVSWPVSDMLAAKLHYTGYVAPPAAAPHPDGVGKGE
ILVSAGGGSVGDALYACAIEAAKEMPDYSWRILVGGADAAARIAELHDPSSPASLEPARSDFRAMLPHAA
ASVSMCGYNTALDLLQSGTPAVLVPFDAGKEVEQTLRAKSLSPLPGFEVEAAATLTPARLATALRRVMQD
TQRSLDGFEFDGAGQSVEIAATLLRGQRA
>gi|99078664|ref|YP_611922.1| hypothetical protein TM1040_3693 [Ruegeria sp. TM1040]
MTEGWDALDAELEQWAAAGLRLPLWWRDDDAVTPTDALTRLEAMATRLDLPVHLAVIPKAAEDALAQHVS
QSSHLIPVVHGWAHVNHANPDKKTCEFPSTRPVDEALTDAEQGVERLKHLFGARLQPMFVPPWNRISPAM
LPWLAGLGFAAISTYGPRKRTQAASGLVQINTHIDPIDWKGGRGLMPEAQILQKLVANLQARRSGQQDNA
EPLGLLTHHLVHTDEVWEFCDTLLRRLLEGPAHPWRFNERIN
>gi|99078665|ref|YP_611923.1| hypothetical protein TM1040_3694 [Ruegeria sp. TM1040]
MSRLDSMLRRLTAQRDGLNWAAQEISLLTGDVLDLGLGNGRTYDHLREVMPERRIWVIDRVLQCHPSCVP
PEENFLQGEAAPMLDRLAEGGHKLALAHYDLGFGIKEKDVAEAAKLSPVIARVMVPGGVIVSGQPLVGFK
EIDGPEGIPEGRYMFYRVE
>gi|99078666|ref|YP_611924.1| phosphonate metabolism PhnM [Ruegeria sp. TM1040]
MTQEMILANATLILAGETRTGCVKISDSVIADIADGSSVPAGAVDLEGDFLSPGLVELHTDNLERHIEPR
PGVDWPHAAALVAHDAELASTGITTVFDAMRVGSIPSGKGRYIKYARQLASEMLDLRTKDMLKISHFLHL
RAEVCSETLAEELAEFTAEDRVGLVSLMDHTPGQRQFRDIAKLEQYVKSKRGMSDEEFINHVAQLKDLRA
RFGDLHEATTVAEAARFGAVLASHDDTTADQVQTSAGHGIRLAEFPTTVEAARACHAHGIKVMMGAPNLI
RGGSHSGNVAARELADLELLDIVSSDYIPAALLQAAVKLGEIWGDLARGMATVTAAPAASVGLTDRGVLE
VGKRADLIRFRTREGVPMLRAVYSRGARVA
>gi|99078667|ref|YP_611925.1| hypothetical protein TM1040_3696 [Ruegeria sp. TM1040]
MTFTRYAIYYAPCADAAWSKWATSWLGWDIVAGREVAHPSAGALDVTTITATPRKYGLHATLKPPMRLAD
GHDESALRGACEALAARLPPVQLEGLQVERLGRFLALRPIGDVGAPNALAAACVTELDGFRAPAPDAEIA
KRRAGGLSAEQDAHLLQWGYPYVLDQFRFHITLTGKLPKRELPAVEAYLAEALVPLLPQPFVINDLALMG
EAEDGRFHLIQRYALSA
>gi|99078668|ref|YP_611926.1| phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN [Ruegeria sp. TM1040]
MSVPADTSPAKGPVIAVVGPSGVGKDSLMSGLAVADPRLRSMRRVITRAPEAGGEDYQPVSEAEFQALVE
ADVFALHWNAHGLRYGIPRDIEKLREGATGVLVNLSRAVLLQAQEVFDDFRVISVTARPEVLAARLAGRG
REDAAEVERRLARASLALPEGLRQVHEVDNSGALSAAIVEAQAIIQAERA
>gi|99078669|ref|YP_611927.1| phosphonate C-P lyase system, PhnL [Ruegeria sp. TM1040]
MTASQTPMIDIQNVSKTFTLHNQGSALIPVMEGANLSVSPGECVGLVGASGAGKSTLMRLIYGNYLAASG
HILIGGLDVANAEPREILELRRKTLGYVSQFLRVVPRVSTLDVVAEPLLSVGTPVEKARDRAASLLAQLN
IPERLWTLSPTTFSGGEQQRVNIARGFAYDYPAMLLDEPTASLDAQNRATVLGLIESAKARGAAIIGIFH
DEAAREQVCDRFVDVSAFAPKAAA
>gi|99078670|ref|YP_611928.1| phosphonate C-P lyase system protein PhnK [Ruegeria sp. TM1040]
MHPLLKVNNIKKMYGHRIGCTDVSFDLYPGEVMGIVGESGSGKSTLLNCLAGHLDTDGGEVIFDTRDRGP
VDTLTMSEPERRMLGRTDWAFVHQHAREGLRMSVSAGGNIGERLMAVGDRHYGNIRDRAVDWLDRVEIDE
SRVDDRPTAFSGGMQQRLQIARNLVTGPRLVFMDEPTGGLDVSVQARLLDLLRGLVREMGLSAIIVTHDL
AVVRLLADRLMVMKSGHVVETGLTDQVLDDPQHAYTQLLVSSVLQV
>gi|99078671|ref|YP_611929.1| phosphonate metabolism PhnJ [Ruegeria sp. TM1040]
MSDYNFAYLDEQTKRMIRRAILKGLAIPGYQVPFASREMPMPYGWGTGGVQVSAAALTPDDTFKVIDQGA
DDTTNAVSIRKFFERTAGVATTEETEKASIIQTRHRIPEADLREDQILVYQVPIPEPLRFLEPRETETRK
MHALEEYGLMHVKLYEDISQHGAIATSYAYPVKVEGRYVMDPSPIPKFDNPKMEMAAIQLFGAGREQRIY
AVPPYTKVVSLDFEDYPFEATKAEHPCDLCAAEDSYLDEVIVDDQGGRMFVCSDTDYCRSRREAGHVGRL
GQNAPLNTGPEAA
>gi|99078672|ref|YP_611930.1| phosphonate metabolism [Ruegeria sp. TM1040]
MYVAVKGGERAIDNAHAWLAEERRGDQSIAELSLAQIREQLKLAVNRVMAEGSLYDPDLAALAIKQSRGD
LIEAIFLMRAYRTTLPRFGNSKPVETADMTCDRRISATFKDVPGGQVLGPTFDYTHRLLDFKLAAEGEVP
EAPAAEPRLEPTPHVTSFLRGEDIIQTEEDSDATPKDITREPMSFPADRATRLQTLTRGDEGFVLGMAYS
TQRGYARNHAFVGELRIGTVAVEMDIPELGFAIEIGEVELTECETVNQFKGSKTEPPQFTRGYGLVFGQT
ERKAISMALVDRALRWKELGEDDLGAAAQDEEFVLSHCDNIQATGFLEHIKLPHYVDFQSELELVRKLRR
EAEAARTEAEQAREAAE
>gi|99078673|ref|YP_611931.1| carbon-phosphorus lyase complex subunit [Ruegeria sp. TM1040]
MPDTEIYTGGFADPAVASAHAFRAAMDVMARPGEIREITGGSAPEGLSQAAASLILTLADPETGLFLAPD
VDSAALRGWITFHTGAPIVRAAKADFAVGGWDALMPLEQYRIGTSEYPDRSATLIVESPAFEPPNAMLRG
PGIKEHARMYLPDVALMQRNAMLYPLGVDVFFTSGSEIAALPRSTQIQPEG
>gi|99078674|ref|YP_611932.1| phosphonate metabolism PhnG [Ruegeria sp. TM1040]
MTQERTPEDRKAWMSLLATAPEARLASLFEAFGHSPEHAFLRAPETGGVMVRGRTGASGAPFNLGEMTVT
RCTLKLVSGEVGHGYVQGRSKRQAEMAAKLDAMMQTEAAPELENKILTPLRTERDAAREARAAKAAATKV
DFFTMVRGED
>gi|99078675|ref|YP_611933.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MTKAASRTPVWKSIAITLTDDIAQGRYDRGAKLPAEAQLAERFGVNRHTVRRALADMSEQGLVHARRGAG
VFVAAKPTDYPVGKRIRFHQNIRRAGRVPSKKVLRLETLAADAREADVLELEPGDPVVVYEGLSYADDHP
VALARTLFPADRLPGIIDALQSHDSITAALKACGVEDYTRRETRITAKLATATQALHLRTSEGAPILRTT
GISDDLNGVPIEFGRTWFAGDRVTLTVGDD
>gi|99078676|ref|YP_611934.1| hexapaptide repeat-containing transferase [Ruegeria sp. TM1040]
MPKLSASDPYAHPGCSLTNSTFGAWVEIGANTRVANSAFGDYSYCDRMCDIANAQIGKFANIASCVRIGA
TDHPMEKASLHHFLYRSASYWEDAEDDADWFAHRKSRRAEIGHDTWIGHGALIKPEVTIGHGAVVAAGTV
VTKDVAPYTIVGGNTAKLIRRRYTEPVAERMIALAWWDWDHATLRAALADFRALPAEAFLEKYE
>gi|99078677|ref|YP_611935.1| phosphonate ABC transporter permease [Ruegeria sp. TM1040]
MTTLDLNTAPLKGQMDKLFFKKRLMNFGIPALILAYLTYVFFAFDVPGLWERASMDNARTLVSDTYSYKT
HVTRDNRTGDVTYAVEGERKGEYPEGMSPEWVTPGATTVIDLTGGHVVRFGPETIEYDIPGYGLVTATPS
RSQGVQAVLPEGEVPAWINLSKNRLAITTDAGRLTVTRNRAEVFRYFYGWELFFFTLDSPYHGMGPLELV
GHAVSGEAGAIWNDFWTNKMWRHSDVAWAIGETILMAFLGTFGAGLVALPLAFLGTRNFMPVRIIRFATR
RVFDFVRGVDSLIWTVVLARAFGPGPLTGALAILITDTGTFGKIFSEALENVDEKQIEGVASTGAKPVQR
YRFGVIPQITPVLLSQLLYFLESNTRSATIIGAITGGGIGLLLTQAIITQKDWEEVSYYIVLIILMVMVM
DWFSGWLRKRLIRGDEGGH
>gi|99078678|ref|YP_611936.1| phosphonate ABC transporter permease [Ruegeria sp. TM1040]
MADLTAQAPGSVAEIKAQYADLTRRKRIYGGVLLALFIALMVAGFRTADDRNAGSFADGYQRIFDYPAEV
LSEAVEKIAELPAHVVHFLPALIETLNIAGASTLIGAIFGTLLSLLSTRGMAPWPALIPLFRRIMDICRA
IPEIVIALVLIFLLGGGPVPAMIAIAIHTAGALGKLFSEVNENASLKPVEGLNSTGASWAQRMWLGVIPQ
VGPNYVSYALLRFEINIRASAILGFVGAGGIGYELKNSMSWGQGKYDEAAAIFILLFVTIVVVDQISGTL
RDRLTHGNRKGA
>gi|99078679|ref|YP_611937.1| phosphonate-binding periplasmic protein [Ruegeria sp. TM1040]
MKHLILAALASTALTTPVLADDISEFRIGILGGENAQDRLNSNECLRAKTEELLGVETKLFAPADYNGVI
QGLLGGTIDMAWLGASGYAKTYLSDPEAVEPVLVKVNVDGGYGYYSVGFARKDSNINALEDVKGKVFGFG
DPNSTSGYLIPSIEIPQATGSTMQSGDYFGEVKFTGGHEQTIVAVANGDIDAGVTWADGLGNWEDGYNSG
ALRKAVDAGLVDMNDLVQIWQSKPIPEGPVVLRKALPEDVKVKMTALMASMPAMDYDCYYSVAAGDSKGF
QPISHEAYEVIIEARKLKSN
>gi|99078680|ref|YP_611938.1| phosphonate ABC transporter ATP-binding [Ruegeria sp. TM1040]
MLRINKLTKRFGDKTAVETATLDIDKPCMLGIIGRSGAGKSTLLRMINRLGDATEGSISFEGREITTLKG
KDKRAWQSECAMIFQQFNLVPRMDVVSNVLHGTLNRRSTLATVFNLYPMADIHKAIEILDRLGIAEHAPK
RAEALSGGQQQRVAIARALMQDPKIILADEPIASLDPMNAQTVMEALRRIHEEDGRTVIANLHTLDTARR
YCDRVVGMRDGRIVFDGLPEQLTTGVAREIYGAGADFSEAATSTAIETLEQTDAVRTAEAYV
>gi|99078681|ref|YP_611939.1| ribulose-5-phosphate 3-epimerase [Ruegeria sp. TM1040]
MSFDRSIKIAPSILSADFANFGQEIQAIEAQGADWVHVDVMDGHFVPNLTFGPAAVKAFRPHVKTVMDVH
LMIAPVDPYIDAYADAGADVLTAHVEAGPHIHRTLQAIRAAGMKAGVALNPGTPAEAVAHLLDLTDLICV
MTVNPGFGGQKFIDMTAKIRSLREMIGDRPVHIEIDGGVDPTTAPLVVEAGADVLVAGSAVFRGGSVEAP
EVYGENIRKIRAAANA
>gi|99078682|ref|YP_611940.1| hypothetical protein TM1040_3711 [Ruegeria sp. TM1040]
MTSDSEAQAVEVVSDPGCQQMVGYQTQFDAAGTCRVTLDLAARHLNRHRILHGGMVATLMDVACGHTAGR
YFDPEGNASVVTVALNLSYIASTSAG
>gi|99078683|ref|YP_611941.1| hypothetical protein TM1040_3712 [Ruegeria sp. TM1040]
MNGEKTILVAGTWDTKDDELSYLSEVIRGQGGQVLSMDVSVLGEPKLPTDVSKHDVAEAAGSSIQRAIDS
GDENTAMQIMGAGSARLALDLWRAGRIHGVIVLGGTMGTDLALDLCAALPLGVPKYVVSTVAFSPLLPPE
RIPADLQMILWAGGLYGLNDICKASLSQAAGAVLGAARAVEAPSFERPMVGMTSFGKTVLRYMVTLKPEL
EKRGFDVAVFHATGMGGRAFESLAGEGAFAAVMDFAPQEVSNHLFGGLSAGEGRMTHAGHAGVPQLIAPG
CYDLVDFVGWQGAPEQLRGRECHAHNRLLTSAMLDARERQRVAQEMCNKLARASAPVTVFLPRAGCNEWD
RAGGDLHDAEGLRAFCDEMRRGVPENAQLQELDCHINDAEFTNAVLAQFDAWIKEGVIVR
>gi|99078684|ref|YP_611942.1| betaine-aldehyde dehydrogenase [Ruegeria sp. TM1040]
MATATAKDVDRAVVSARRAFDDGRWSGLAPAARKKVLHRIADKIEAEALALTVLGVRDNGTEFNMALKAE
AGSAAGTFRYYAEALDKVAGEVAPTAPDVLGLVHRAPVGVVGAIVPWNFPLMIGAWKLAPALAMGNSVVL
KPAETASLSLLRLAEICADCGLPDGVLNVVTGPGAVTGAALSEHMDVDVMVFTGSGATGRRLLVASARSN
LKRCYLELGGKSPNIVFADAKDLDHVAKVSAMGIFRNSGQVCVAGSRLLVEASIHEEFVARVVAHAQALR
VGDPLDMNTQIGAVNSETQLAANLAHVERAAAQGGEVLCGGGRILSETGGTYMAPTVVAGVTQDADLFQK
EVFGPVLSVTAFESEDEALRLANATDYGLAAGVWSQDLSRAHRCVAGIRAGVVHVNTYGGADNTVPLGGV
GQSGNGHDKSLHALEKYVDLKTAWIQL
>gi|99078685|ref|YP_611943.1| hypothetical protein TM1040_3714 [Ruegeria sp. TM1040]
MDLILSALEILMRWDVALALLAGSVGGVLIGAIPGVGPAVAIAILLPATFSLDPIVGLTVLLGIYGSSMY
GGAIPAILINTPGTAVNALTTYDGYPMTARGEPRRALSLAYSASFFGGIFSVICLILFAPVLAKVAPLFG
AREIFLAALLGLILVVVAHRGQALIAGALACLGIFLNTIGMEPVKYTQRYTFGTDALGSGINLIVVVLGL
FAISQAFILLTDEDEKIRLTKLRGGVFQGLRELARHPRVASVSAGFGVVMGMIPGVGEFTAQFMSYTYAQ
KTSKRPQDFGNGSSEGLIAAETANNAVPAAAMVPLLALGIPGEALTAMMLSVFYVHNVVPGPGLFQNQMD
FVVALYLALLILNVLVLVFLLAATKSLVQVVRIPNRFLGVGILTLSFVGVYSLRNSVTDCFMAAGFGLFG
FILKRLQLPAVPIILGMVLGGIMEVKLRAAMARVKTPFDFIDRPVAFILFSLILIVLAAHLFRIVKEARE
LKEAEWQTKTSSTRFGALLLRRRASFLKEHGKKVRARHARLLRRLTDLF
>gi|99078686|ref|YP_611944.1| hypothetical protein TM1040_3715 [Ruegeria sp. TM1040]
MARRIFRPATCLPHPDRFPSQRPFMQSERERRFIGPRRGQLLFVLSFLALAVMLLSQIGTQTAWVRKTDF
FAQPRFWPAVGVGGMVVFTALHLWRLPFRRIDRSDLREAQRWAAALEYMLWFMGYVVLVPLAGYLPVTLV
FVPLLAWRMGYRSPQMMAISAGFAVFIVLFFKGVLAVRIPGAALYEYLPDAWRSFAILYL
>gi|99078687|ref|YP_611945.1| hypothetical protein TM1040_3716 [Ruegeria sp. TM1040]
MTMTTVLKGCVAAAGLALTAGAAAADYPEKPVNFIVPWPPGDLEDVLTRMIAEDFQEKYGVAAAVVNKPG
GGGGPFPGAIEVANAPADGYTVGSFVIGVPVMGHQIDIPPLTPAKFDPLGIFLTYPFVIATSGDSPYSSM
AELAEYAQDNEVVLGHFGDVLTPTQVTKAFAKSAGFEWGADAAFDALDCNTLASGDADVINTTLQLILPC
LDDIKVLVSITDDRIPLVPDAPAIGELNPDLDIALWNGLFVTKDTPQDVRDKIIEVAQETVFSERAQAVA
AETGALVYWQNADESAARVASDIETMARIGETLE
>gi|99078688|ref|YP_611946.1| IclR family transcriptional regulator [Ruegeria sp. TM1040]
MGTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRLAA
LREASVPILSASRRVLRELSEDTGETTHLSLLQGEQLASLSHAYSSRNATKVMMEDAEVLTFHGTASGLA
VLAYSEPSFVDAVLAAPLTARTPQTQTDPAAIRAEIAEVRRTGLAQSIGGFEAEVHSHAVPIFGPDRAVL
GALAVAAPTSRMTPDQKRTIPPALRAAGLSLTERIGGACPPEFPTDIAA
>gi|99078689|ref|YP_611947.1| hypothetical protein TM1040_3718 [Ruegeria sp. TM1040]
MTAHQPDANFLKEHNARSLWHPMAHPGDSLANPPTIVTGASGVRIKDVDGHEVVDAVGGLWNVNLGFSCQ
PVKDAIAAQLDVLPYYSIFRGTTNDQVIQLAEELRDFFAPDGLSRAFFTSGGSDSVETALRLARQYHKVR
GEPARVKYLSLKKGYHGTHFGGASVNGNANFRTAYEPLLAGCHHIPAPYTYRNPFNETDPERLAQLCLAA
LEDEIAFQGAGTIAAFIMEPILGAGGVIPPHESFMPGVAEICRRHGILLIADEVITAFGRTGSWSGSRHW
GVQPDMMCTAKAITNGYFPFGALMLSERLVEVFEKDDTGKAAIGHGYTYSGHPVGAAAALACLAETKRLN
VPENAAARGAQIFEGLQDLAARYDLIGDVRGGHGLMSALELVSDRATKAAVDKKVINRLQEVAYQNGAMV
RVSGPNIILSPPLVLTEADAAQILSALDAGFAAVN
>gi|99078690|ref|YP_611948.1| methyltransferase FkbM [Ruegeria sp. TM1040]
MASDALPVVSQEIAATCLGVKVPQSSFLTETRIKRINAARYEGQEIAGALHVVCEEDRVLEVGAGLGIVG
AVIAVNAKPQKVLSFEANPELVPVIHALHDMNDLGSQVELRNQVLFAGTDRPQTMAFHLRNSFLGSSLLN
EAGRPSRVVEIPTVDAAEVIAEFKPTVLVMDIEGGELALLEALDLSAFRAIVIEFHPEAYEVKGMRRCKT
ILREAGFEKVDDVSTRTVWTCTRNIETS
>gi|99078691|ref|YP_611949.1| glutamate--ammonia ligase [Ruegeria sp. TM1040]
MKTRLRALFCDHLSIMRGKYLPHSKIGDDETRFCRSVFGTHYDRDLLDAPGSMVKQGLPDMTLRWRHDDI
RDSWHASTKIVLGDLYDDEGELLTLCPRGALKRAVADWQGKGLSPKIGIELEAFALQPDEYGRLVPYDAP
GGVVYGTGPFADPLRFNDRIWAMADEMGFSLDMITAEFDSPQFEYTLTFDDAVKAVDDIVLFRLMAREIA
LEYGIVLTFMPKPVAQAGGSGMHVNLSFTDEAGGNALSSGPRGGPDHMNDLARGCLAGFLHHHKGLAGLI
APTANSYMRLQPGSLSGFWQNWGGDHRNVTTRISSEGGAKARLEHRMADASSNPYTTVAALLQAARLGVE
RGYALGPMETGDGFDRTDTRESTAMTLKGAVADLEKDTSLAEAVGPDLVANHVYMKQKEVRKTRDLEGDA
LRDFYVHFV
>gi|99078692|ref|YP_611950.1| cytochrome P450 [Ruegeria sp. TM1040]
MTIWTPTDDGYADLSSHDAFANGAPHNTFARLRRDDPLHWTEYSDGENFWSVTRYDDITKMNKNTEIFSS
ARGIRMEDQTYEEYLARRTFQETDPPEHSQVRMKLLKAFSKTTMAQYEADIRDLCAEILDEALAKGSFDA
TKEIARQLPMRMLGRVVGLPDADLPWLVEKGDALIANTDPDFTSHVLDKMDTDEFRMMPFNSPAGAELYI
YAKELMEAKERAGDTSGVLNMILQPARDGSVITETEFRNFFCLLVAAGNDTTRYSIAAGIQAMCHQPELL
AQMQAGGEIWETAADEIIRWATPALYFRRTATQDVEMHGKTIREGDKVLYWFASANRDDSYFDDPFRVNL
MRNPNRHLSFGQFGPHVCLGMWLARLEVTVLFQELSKRIKSIEPNGAHKFLRSNFVGGIKELPVRVEAA
>gi|99078693|ref|YP_611951.1| glutamine amidotransferase class-I [Ruegeria sp. TM1040]
MTNTDESAFAHRYPKDGEKFTALIQMARPEWHCDVYAVKDGVFPENIRCYDGAMITGSPASTRSGAHWVA
QLLDLIRQMHAMRLPLFGACFGHQAIALALGGRVDNLPGGWVHGRTENHLVARPEWASDLPDVVSIYGSH
VEYVCTLPKGAQPLMSRADHTTGFMIGDHIATSQHHPEMTHAFICALTEELRQKMGPEVYARAQESLAQE
VDQPALAEAIARFFETASASRGRPADPSP
>gi|99078694|ref|YP_611952.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
MAGQTETLIGAILADIDAGRLAPGQEIDEAALASHHGVSRTPIREAYIQLEATGLIRRLPRKGAVLFKPT
LEEFLAIQEVHAQLEGQAAGLAARRISPDLRAELERITKDCADHASSKGDADPDGYYQLNLRFHETVALG
AANPFLVEMIKTNARKLMAYYRARYRYPGAIAQSALEHREIAELILSHDRNGAEAAMRAHVQFDQVTVMD
LLAALG
>gi|99078695|ref|YP_611953.1| phenylacetate-CoA oxygenase subunit PaaA [Ruegeria sp. TM1040]
MYAQMVKSTGTGVKSTEEMSAEERAFQARIDAGEKIEPKDWMPEGYRKTLIRQIGQHAHSEIVGQLPEGN
WITRAPTLERKAILLAKVQDEAGHGLYLYCAAETLGVSRDEMTEMLLDGRMKYSSIFNYPTLTWADMGAV
GWLVDGAAIMNQVPLQRTSFGPYSRAMIRVCKEESFHQRQGFDIMMKMAQGTPQQKAMAQDALNRFWYPA
LMMFGPSDKDSVHSAQSMAWKIKMNTNDELRQKFVDQTVPQAEYLGLTVPDENLKWNEEKGGYDFSEPDW
EEFFEVIKGNGPCNTDRLAARNKAWDDGKWVREGMMAHAEKKRARKMAAE
>gi|99078696|ref|YP_611954.1| phenylacetate-CoA oxygenase subunit PaaB [Ruegeria sp. TM1040]
MKTEWPLWEIFIRGQHGLSHRHVGSLHAPDAEMAIKNARDVYTRRNEGVSIWVVEAAQITASSPSEKGPL
YEPSESKVYRHPSFYDIPEDVGAM
>gi|99078697|ref|YP_611955.1| phenylacetate-CoA oxygenase, PaaI subunit [Ruegeria sp. TM1040]
MSHDAAFYEFLLRMGDNTLILGHRVSEWCGHAPVLEEDIALANTALDLIGQTQMWLGLAAEVQGEGKTAD
DLAFLRDAWDFRNLLLVEMPNGDFGQTLMRQFLFDAWHVLQLRALTGSSDERIAAIAAKAVKEATYHLER
SAETVVGLGDGTEESHARMQAALDYLYPYVGEMFLSDVVDAALVEAGIAPDPASLRADYDDTLARVLGEA
TLALPKARRARGGGRDGKMHTEHLGHLLTTMQWMQRAYPGATW
>gi|99078698|ref|YP_611956.1| phenylacetate-CoA oxygenase, PaaJ subunit [Ruegeria sp. TM1040]
MTDTQSNQPALAQIWEWLDAVPDPEIPVISLVDLGIVRNVEWGDDRLIVTLTPTYSGCPATSVIRLDVET
ALAAHGIERVEIKTQIAPPWTTDWLSDKGRARLEEYGIAPPSPAGGPDHCPRCGSPDVTRVSQFGSTPCK
AHWRCTSCLEPFDYFKCI
>gi|99078699|ref|YP_611957.1| ferredoxin [Ruegeria sp. TM1040]
MARFHPLEVTDIKKTIRDAVVVTLKPLNGAAAEFDFTQGQYLTFRRDFDGTELRRSYSICAGKDEGILQV
GIKRVDGGAFSTWANTVLKVGDTVEAMPPQGRFFTDLDAAAEKHYLGFAGGSGITPVLSILKTTLQAEPQ
SRFTLVYANKGINSIMFREEIEDLKNRYMGRLSVIHVLETDAQEVDLFTGLVTQEKCAELFERWIPIQSV
DTAFICGPEPMMLGIAEALRTAGLSDEQIKFELFASNQPGRAAKKATSGDAAASAPVTAAITLDGATRSV
TLDRNTSVLEAALENAMDAPWSCRAGVCSTCRCRVIEGEVEMAANHALEDDEVAKGFVLSCQAYPLSDAL
VVSYDE
>gi|99078700|ref|YP_611958.1| aminotransferase [Ruegeria sp. TM1040]
MAVGKTIRTYFNGQWHDGDVPIMSAADHAAWLGSSIFDGARWFDGVSPDLDKHCARANASAEALMMAATV
PADEMVEIVREGLKGFSPDSAVYIRPMYWATDGDQTLIAPAPEATQFAISLEEIPMAAESASATLTRTQF
RRPVLESSVVNAKAGCLYPNNARMLREARAKGFTNTLTCDVMGNVAETATANIFMVKDGEVFTPIANGTF
LAGITRARHIENMRADGITVHEAVLSYAHFETADEVFMSGNMSKVTPVTAFDDVSYQHGPVTRRVRELYW
DWAKSGA
>gi|99078701|ref|YP_611959.1| hypothetical protein TM1040_3730 [Ruegeria sp. TM1040]
MRKFLVVLDDSRECLNAMRFAAMRAANTGGGVVILSVIPPDEFNHWIGVGEVMREEARERIHAHFEVFAK
WMRDRQGVDPELVIREGDTVPEILAQIEADPEVGVLVLGAASDRKGPGPIVTQLTRTAGTLPFPITIVPG
DMSKERLEAIT
>gi|99078702|ref|YP_611960.1| putative lipoprotein [Ruegeria sp. TM1040]
MTRVLMCLGVAALLAACGADGEPVRPSLNAGLGISGSGVHVGGAIGVRKGPVSVSIGL
>gi|99078703|ref|YP_611961.1| argininosuccinate lyase [Ruegeria sp. TM1040]
MTDKTSNQMWGGRFAAGPDAIMEAINASIGFDQRMAAQDIAGSRAHAAMLAATGVITDNDAEAIREGLLT
VLSEIESGSFQFSTALEDIHMNVEARLKEIIGEPAGRLHTGRSRNDQVATDFKLWVRDQFDAAEKGLLAL
IKALVDQAEAGADWVMPGFTHLQTAQPVTWGHHMMAYVEMFGRDLSRVRDARKRMNESPLGSAALAGTSF
PIDREMTAKALGFDRPTANSLDAVSDRDFALEFLSVASICAMHLSRFAEELVIWSSAQFRFVTLSDRFST
GSSIMPQKKNPDAAELIRAKVGRIFGANTALMMVMKGLPLAYSKDMQEDKEQVFDAADNWMLALAAMEGM
VKDMTGNRESLAAAAGSGFSTATDLADWMVRVLKVPFRDAHHVTGALVAMAEGRGVDLPDLSLEDMKSVH
EGITEDIFTVLGVENSVNSRMSYGGTAPAQVRAQVARWKEILG
>gi|99078704|ref|YP_611962.1| redoxin [Ruegeria sp. TM1040]
MRIVRQLSLYMALALGANAAFGADLSAVEALREGDMKKLVFHTEAKPASDATFELADEAGQGHLSDYEGK
YVLLNFWATWCPPCRKEMPMLSALQEEFGGDSFEVVTLATGRNNPAGIKKFFDEIGVTNLPRHQDPKSAV
ARDMTVLGLPITVILDPKGNEIARLRGEADWNSDSARAVIRALVAGS
>gi|99078705|ref|YP_611963.1| diguanylate phosphodiesterase [Ruegeria sp. TM1040]
MKKRHFWKNDIPEGAENPLSAAIVARDRNVVDMVAEAVRHDQTLLAYQPVVQSRAPDAIAFYEGYIRVMD
ATGRIIPAREFMSVIEDRELGRKLDCLALEQGLRVLQRNPNIRLSINMSARSIGYSQWNKVLERFLERDQ
FLGERLVLEISEASAMATPELVIDFMDQMQQHGIAFALDNFGAGTTAIGHFRDFFFDAVKIDGQYVRGVH
ASHDNQAVIKALIAIAKQFDMFIVAESVERQEDADFLIEAGVDCLQGFLYGAPTISPPWQNENDSRARA
>gi|99078706|ref|YP_611964.1| acetyl-CoA acetyltransferase [Ruegeria sp. TM1040]
MTNVVIASAARTAVGSFGGAFATTPAHDLGAAVLEAVVARAGIDKSEVSETILGQVLTAAQGQNPARQAH
INAGLPKESAAWGINQVCGSGLRAVALGAQHIQLGDASIVAAGGQENMTLSPHAANLRAGHKMGDMSYID
TMIRDGLWDAFNGYHMGQTAENVAEQWQISRDMQDEFAVASQNKAEAAQKAGKFADEITPFVVKHRKGDI
TVDADEYIRHGATIEAMQKLRPAFTRDGSVTAANASGLNDGAAATLLMSADEAEKRGIEPLARIASYATA
GLDPSIMGVGPVFASRKALDKAGWSVDDLDLVEANEAFAAQACAVNKDMGWNPEIVNVNGGAIAIGHPIG
ASGCRVLNTLLFEMKRRGAKKGLATLCIGGGMGVAMCVERP
>gi|99078707|ref|YP_611965.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Ruegeria sp. TM1040]
MARIALVTGGSRGIGAAISKTLQAQGCQVAATYAGNDAAAAQFTEETGIKTYKWNVADYEDSKAGIAQVE
ADLGPIDIVVANAGITRDAPFHKMQPEQWQQVIDTNLTGVFNTVHPVWPGMRERGFGRVIVISSINGQKG
QFAQVNYAATKAGDLGIIKSLAQEGAAKGITANAVCPGYIATEMVMAVPEKVRDAIIGQIPTGRLGEPEE
IARCVAFLASDDASFINGSTISANGGQFFV
>gi|99078708|ref|YP_611966.1| DNA-binding transcriptional activator GcvA [Ruegeria sp. TM1040]
MSDRLPPLTALRAFDAAARHMSFAKAADELSVTPAALSFQIKSLEEHLGAPLFRRLNRAVELTEAGAALA
PGVDEGFQALSAAWRQARRVLDTTSLTVTAGPALTAKWLAPRLYEFARSHPDIDLRLSAGLKMVDLRRDH
VDVAIRFGYSVDDYLVAQAARPEWLTPVMTPELCAKYPTPQSLRDAPLIYDDSIGFLSPSCDWPTWFRAM
GLEFTPGHGTHFSHADHAIDAACAGLGVALGRRPMIIKDVQEGRLVAPFKVAIETDAKFHFLCLPSSQDR
PQIRAFREWFFSEIEKTAHMWDDFTIIPVKDL
>gi|99078709|ref|YP_611967.1| hypothetical protein TM1040_3738 [Ruegeria sp. TM1040]
MTRPRATAVGFVAVLLWALLALLTFGSSPTPPLLLNTICFTIGGIIGLIWVQMTGSWAELRRVRLRVYAF
GSIGVFGYHALYFSALRAAPAAEAGLIAYLWPLLIVLLSGLLPGERLRAGHFIGAVLGFAGAACIITGGG
VGFQAQYLPGYGLALLCALFWSSYSVGSRLIGDAPTSSVAVFCLLSAVASGALHVLLEDTIWPANSLGWA
SALLLGLGPVGLAFYVWDIGVKQGDIQMLGTSSYAAPLLSTLILVLAGIAAPTWGLALATVLITAGAVLA
ARASAKAPAHTLVEGQTVTPPAG
>gi|99078710|ref|YP_611968.1| hypothetical protein TM1040_3739 [Ruegeria sp. TM1040]
MSLSSHLNQLKKKHEHLSFEVEQAERSPAIDRMHVKSLKKEKLRLKDEIERLSPV
>gi|99078711|ref|YP_611969.1| methyltransferase small [Ruegeria sp. TM1040]
MAEPQSFAQDELSLDAFLGGQIKLLQPKSGYRAGVDPVLLAAAVNAKSGDSVLELGCGAGQAFLCLAARV
SGLSIVGVELQPAYAELARRNAAVNAVPAEVVVADLSNLPATLRQRRFSHVIANPPYYRAGAHSQAKDPG
RRTALGEGTPLELWFDVAARRLTPKGYLHMIQRVERLPDMIAAAQGRLGSLEVLPLSPRVGRATELVILR
ARKGGRAEFRLHAPLVMHQGDAHHRDGEDYSPAVRAVLREGSALPWPDIGRN
>gi|99078712|ref|YP_611970.1| hypothetical protein TM1040_3741 [Ruegeria sp. TM1040]
MDMKELLRSTDPTVLAFATALLNGEGIDCFEMDVNMSVLEGGIGIFPRRLLVHADDLEDARVVMRDNDLP
VSDRG
>gi|99078713|ref|YP_611971.1| farnesyltranstransferase [Ruegeria sp. TM1040]
MNQVMTKTPQGKPHELLAETLAPELEAVNLLIRERMASQHAPRIPEVTAHLVEAGGKRLRPMLTLAAARM
CGYEGEHHLKLAATVEFIHTATLLHDDVVDESAQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMVDTGS
LRVLDILANASATIAEGEVLQMTAATDLGTTEEIYLQVVRGKTAALFSAATEVGGVIAGASEAQVKALFD
YGDALGIAFQIADDLLDYQGDTAKTGKNVGDDFRERKLTLPVIKAIAQAGDEERAFWHRTIAKGRQEEGD
LEHALSLMAKYATLEATRADAIGWADKAKSALADLPEHPIRTLLIDLADYVVSRLN
>gi|99078714|ref|YP_611972.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Ruegeria sp. TM1040]
MTITEVFAPAKVNLSLHVTGRRADGYHLLDSLVAFASIGDRLRLSPAEELSLSVSGLFADGVPEDSRNLV
WRAAEGADWRGHIGLEKSLPHGAGIGGGSSDAGAVLNAFRSQGHTVPKALALSLGADVPVCMHASAARMQ
GIGEEITPIPLPKLPALLVNPGVEVPTGAVFSGLASRENDPMPSEVPRFDGVADCAGWLGAQRNDLEPAA
IAAAPLIERVLSDLRASRAALLARMSGSGSTCFAIYPTLKAAHFAAYEIGAEHPEWWCVATELS
>gi|99078715|ref|YP_611973.1| tetratricopeptide TPR_2 [Ruegeria sp. TM1040]
MPVSYLRSLTCAAALLLTTGPMAVADGLAGAYLAGRAATYESDFAASAKYYTRALVRDPQNITLMENLVY
AQLALGEVESALPVAERMWQAGVSSQVANIVMAGNLALQENYDALLARDSEQFEISPLVDGLLDAWAYMG
KGAVSQALDQFDAVAQQDGLRFFALYHKALALASVGDYEGADQLFAANEGQLGRSSRRAAIARIQVLSQL
GRNDQALEVLVDSFGEGFDPALTEFADQLAMGETLRFSITPTARDGMAEVFYSLGQALSGEAASDYVLMY
ARMAAKLSPGHVDAVLLSAGLLDQMGRYELSIATYKQVPRDHPDFHAAELGRAEALRRSANPQAAAEVLE
QLARDFPQHVAVYIDLGDLMRQQENYAEAAKAYTRALELSPDETTNRWFLYYARGICNERLKNWEAAEAD
FRAALEIDPDQPQVLNYLGYSLVERQEKLDEALSMIERAVAARPESGYIIDSLGWVLYRMGRYDEAVGHM
ERAVELMPVDPVVNDHLGDVYWAVGRKLEAEFQWRRALSFVEPEDKDAEANPDRIRRKLDVGLDVVLAEE
GAEPLQVANDDH
>gi|99078716|ref|YP_611974.1| electron-transferring-flavoprotein dehydrogenase [Ruegeria sp. TM1040]
MAEIEREAMEYDVVIVGAGPAGLSAAIRLKQLDADLQVVVLEKGSEVGAHILSGAVLDPCGLDALMPDWK
DKGAPLNVPVKDDNFYMLGEAGEIRIPNAPMPPLMNNHGNYIVSMGNVCRWMAEQAEELGVEIFPGMACS
ELVYGDNGEVKGVVAGVFGLEEDGSYGPNTEPGMELHGKYVFLSEGVRGSLSKEVIAKYGLSDGKEPQKY
GVGMKEIWEIDPAKHKEGSVTHTMGWPLNSNAGGGSFIYHLDNNQVYVGFVVHLNYKNPHLYPYMEFQRF
KHHPMVAELLKGGKRVAYGARAITEGGYQSMPKLTFPGGALLGCSAGMVNVPRIKGNHNAMLSGKAAAEA
AFEAIKAGRQSDELTGYEADVRDGPIGKDLKMVRNVKPMWSKWGLTASLALGGLDMWTNNLFGLSLFGTL
GHGKNDAEATEPAENHKPIDYPKPDGVLSFDRLTNVSFAATNHEESQPCHLRLGNKDTPISVNLPKYDEP
AQRYCPAGVYEVVEKDGKPEFVVNFQNCVHCKTCDIKDPSQNITWTTPQGGDGPNYPNM
>gi|99078717|ref|YP_611975.1| MerR family transcriptional regulator [Ruegeria sp. TM1040]
MPASHGLSIGYLAERTGLAVSAIRYYETQGLLEPWRNAGGQRRFHRADIRRLSFILIAQKFGFTLPEIRE
QLQSLPNKRPPTKEDWSRLSEGFRTHLDARIAMLEKLRDDLDGCIGCGCLSLPTCALYNADDRAAKNGQG
PRYLMGDRPKT
>gi|99078718|ref|YP_611976.1| glyoxalase/bleomycin resistance protein/dioxygenase [Ruegeria sp. TM1040]
MSATLEHANICVTDPHKTAAWMEKVFGWRIRWQGPAIGGGYSVHVGSDNSYLALYAPPEDLGEAPARYSA
KGGLNHLAVVVADLDAAEQAVSDAGYTPRSHANYEPGRRFYFEDEEGVEYELVQYD
>gi|99078719|ref|YP_611977.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEGRIKELEGVLS
LADVIDPSKLSGAIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLNVKSPIARALIGKEEGDSVEVR
TPGGDRSYEILDITYG
>gi|99078720|ref|YP_611978.1| hypothetical protein TM1040_3749 [Ruegeria sp. TM1040]
MTSERSPNEQTKAPRQSDLRLPELESGSRPSLGLAEAIALVLGVLWALVVVAVYVLAPDMALSTEWNAPL
VRILAVMLPVLMLLVAAIALRSARIMREETERLHAAISSLRHMYLAHTQAAAVVSEPSVAKKLDEIAETA
RKTETVLATFQSSRATPTRLAIPSKAMEAVAEQGSFELGTSAEEISPPLSNDHFIRALNFPDSAEDEEGF
VSLRLALKDRHAAQVIQAAQDVLTLLSQEGIYMDDLRPDRARPDVWRQFAHGARGRSVAALGGVRDRSSL
ALSSARMKQDPLFRESAHHFLRRFDQIFTRFEQDASDAEISALSDTRTARAFMLLGRVAGTFD
>gi|99078721|ref|YP_611979.1| GCN5-related N-acetyltransferase [Ruegeria sp. TM1040]
MNIALRPARPEDASSLAALSVEVWVGTYLRQGITAHFADYVLSEFTPARMEALIHAPDQNIIVSQNEDGI
DGYIRVSHRCPDPLAGGHQTEVATLYVQPRHQGKGLGRALLLAGLQAAHEAGATSIWLTTNSENAPAIAF
YLAQGFERIGITQFRIEDQAYQNDVFARVLDH
>gi|99078722|ref|YP_611980.1| molybdopterin molybdochelatase [Ruegeria sp. TM1040]
MTLTPPPLSNDCFALPQGVDWTPVDQALALLQERLGPVTSADTVSLSEALGRVLAEDAVALRSNPPQPNT
AVDGYGFSGGRPEGAQVLPLQEGRAAAGVPYGGTVPQGHALRILTGAALPEGVDTVVLEEDVRTDGQSIA
FNGPLKQGANTRKAGEDVNAGEVILRRGRVLTPADLALTSATGLNSLVVRQRLRVAVISTGDELVEPGQA
ARDGQIYDANRPMLLALMQQFGFATVDMGRIQDDRAALAAALDQAAAQADVILTSGGASAGDEDHVSALL
RESGAMQEWRIALKPGRPLALGMWQGTPVFGLPGNPVAALVCTLVFARPAMGLLAGAGWSEPQGFEVPAA
FSKRKKPGRREYLRARMRSGCAEVFKSEGSGRISGLSWAEGLVELPDGAMDVAPGDPVRFIPFASFGMS
>gi|99078723|ref|YP_611981.1| hypothetical protein TM1040_3752 [Ruegeria sp. TM1040]
MLDWSGGNDTGPTPRRDAIWACVVRAGEAQAPVYLRNRQLASDWLKDLVDSELRAGRRLAIGFDFPFGYP
QGFAAALTGEADPLVLWQWFADRIEDAPKLNNRFDLAGDINLRLQPGGQGEGPFWGNGLKRDIAGLPRRK
TQYHNPFAERRQVEYRAKGSFTCWQMSGAGSVGGQVMMGLPVLQRLRREFAPHVSVWPFEPLETPVALLE
IWPSLTVGACPDGWIKDAWQVHSVALDLAGLPVADLNRYLTVTAPIALEEGWIFAVEPDR
>gi|99078724|ref|YP_611982.1| molybdopterin-guanine dinucleotide biosynthesis protein B [Ruegeria sp. TM1040]
MKIYGVTGWKNNGKTGLMERLVAEFTARGLTVSTLKHAHHSTDVDQPATDSYRHRAAGASEVVLASPNRV
AIMQELRGADEPSLTALLARMRPVDLILVEGYKREPHPKIEAHRAEAGTALIAPDDPTIRAIASDTPLDL
DRPVFDLDATPEIADFIAKELGL
>gi|99078725|ref|YP_611983.1| molybdopterin-guanine dinucleotide biosynthesis protein A [Ruegeria sp. TM1040]
MIQPLGVILAGGLATRMGGGDKGLLSLGGQSLMARVIDRLSPQVRQMALNVNGDGARFDDFGLPVIPDSI
DGFAGPLAGVLAGLDWAAEQGADTIVTVAADTPFFPTDLVEQLVAAADGQDTPLVLATTPKSGDEILKSG
GKGRVNRHPTFGLWPVALRDDLRAALQDGLRKVVLWTDRHDGREALFDAEPFDPFFNVNTPEDLARAEAL
L
>gi|99078726|ref|YP_611984.1| hypothetical protein TM1040_3755 [Ruegeria sp. TM1040]
MERDFGIWGVFGFMAWIVAGFSALAFFWKMTSTLGRYFSAMETTPWQHRTTLGWRIENPIVPTLGVRKDY
SHRRLFWRLTLWGAPPQLVHSQEALSALQSYRCLVLSIYLMQALAVVLFGFFFTWALLWLSIGVTVAALL
VLWPAPWTENVT
>gi|99078727|ref|YP_611985.1| formate dehydrogenase family accessory protein FdhD [Ruegeria sp. TM1040]
MSKLNVSTEYRIAPDPGNPHLTRKVTGMDHLGHETEISVVEERPLTIYLNRQEIVTAMTIGDYPEYLALG
FLKNQGMLSADDVVTRVDYDEEVETVVVRTEVETSHEEKLQKKTRTSGCAVGTVFGDMMAGLEGVNLPQT
PVKTSWLYKLAHEINRTPSLYLEAGAIHGTVLCQEDRPLVYMEDVGRHNAVDKIAGWMLSEGAAASDKIL
YTTGRLTSEMVIKTAMMGIPVLASRSGFTAWGVEIARQVGLTLIGRMRGQRFVCLAGEERLVRDVDPAAM
PEEDRKHRRKSAD
>gi|99078728|ref|YP_611986.1| AzlC-like [Ruegeria sp. TM1040]
MTISTAKSAFWKGVRDSAPFVLVTGPFGLLFGVLAAEAGLNVVEALSFSLAVFAGSAQFTALQLMQEHTP
TLIVLISALAVNLRVAMYSASLTPYLGDAPLWQRAFAAYLTVDQAYALSMIEFERRSDWGTPERMAYFFG
TNGLVAPAWMAATITGALVGASIPDSLGLDFVLPIAFLAMIGPMLRTPAHVIACFTACAVSLPATLMPYN
LGLIVAGIAGMMAGAQAEVWFERKNTAAEAKQ
>gi|99078729|ref|YP_611987.1| branched-chain amino acid transport [Ruegeria sp. TM1040]
MTETEMAFDHGTLWLVIAGLAIGSYGLRFAFIGLVGNRTMPAWLMRHLRYTAVAIIPALVAPLVVWPAPT
QGEPSLIHFAAAALTFVVAVFSKNVLLAMATGACSLWTLMYVFG
>gi|99078730|ref|YP_611988.1| putative lipoprotein [Ruegeria sp. TM1040]
MRTPILILALCAALAGCAAPQRPDADPETIASVAYRDAGKPSMTLITVVNNRTGEGGHTALMVNASERVI
FDPAGSFYADIVPERQDVLFGISPRIFQAYRSAHARSTFHVVTQEVPLTPEQAQIAYQLVTTNGRVAGAF
CANATSSILQQIPGFESIDVTFYPVKLQEQMAQFPGVVTDKYYEDDSEDLKAGLAQGNAALNAPAGG
>gi|99078731|ref|YP_611989.1| hypothetical protein TM1040_3760 [Ruegeria sp. TM1040]
MAEHKHGSMDITVQEKTYASFMTFVTRFTIGLVIFAVFLAIFAT
>gi|99078732|ref|YP_611990.1| hypothetical protein TM1040_3761 [Ruegeria sp. TM1040]
MNMKAAFMALLAYGIFSTHDVVVKFISAEVSAFQIVFFSSLLSFPLLTLMIVKDATPGTFRPNQPGWVAL
RSLMMALIPGCAFYAFSVLPLAQTYALLFATPFLITLLSIPMLGEKVGLPRMAAVIVGFAGVLVVLRPGG
TELGLGHVAALLAAFGNAFQSVILRKLRHTERRVVLMLFPILTTVVIMGLTMPFVYVPLSGTQMGGLAII
SVFGFCATLLLVFSYSIGESAVVAPMQYSQIIWAIVFGALLFDETVDLLTILGAGIIIASGVFIVMREAR
GGRSSTTPVLQSRSRPMLSSGFGLSNLAKAKFDEKGSE
>gi|99078733|ref|YP_611991.1| 3-isopropylmalate dehydrogenase [Ruegeria sp. TM1040]
MSNPSILILPGDGIGPEVMAEVRKVISWFGAKRDIQFDVSEDLVGGSAYDAHGTPLHDDTMAKAQEVDAV
LLGAVGGPKYDALDFSVKPERGLLRLRKEMDLYSNLRPAQCFDALADFSSLKKDVVAGLDIMIVRELTSG
IYFGEPRGIIEEGNERVGINTQRYTESEIERVARSAFELAMRRGKKLCSMEKANVMESGILWREVVTEVS
KDYPEVELSHMYADAGAMQLCRWPKQFDVIVTDNLFGDLLSDAAAMLTGSLGMLPSASLGAPMANGRPKA
LYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDMGTEADRLEAAVEKVLADGVRTADLLGEEGVTPV
STSEMGDAVVEALNASL
>gi|99078734|ref|YP_611992.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
MSARAAFALLLCHLFWTSASDAGPQSGTLRVATFNTELSRKGPGLLLRDLRRGDDQIRAVVGTIVEAGAD
ILALQGVDWDYDLYSLRALQHRLKGAGQDYPYAFAVRPNSGLASGLDLDGDGRLAEPEDSWGWGQFTGQG
GIALLSKHPIAASKAVNLTDMLWKDLPGHRMPVTLDGTLYPDAETAARLRLSSTNHWAVPVTLENGQFLW
ILSFHAAPPVFDGAEDRNGRRNADEILIWTYLLDGTLDAQIPDPFVLMGDANNDPERGEGQNDAITRLLH
HPRLQDVTPSDEAGQHSVIWDSTGPMRVDYVLPSAGLSVAGSGILRSNGSRHGLIWVDIRR
>gi|99078735|ref|YP_611993.1| hypothetical protein TM1040_3764 [Ruegeria sp. TM1040]
MLARITSAAIRGLLVALLIVLPSLLLPVAATQSPEIVAFTALLAGGLIFAEYFSNFPSFLEFRDAPPLNR
SRFFFVSLCMILLSLLAGHPFQPTGFSALVHKFAFLVGDALDFAYSPVHLARLMMPEHVPQYTVDLVRAA
AGLAYLLSLISIAYFAFVIRLRNWPLSSGAFNVWVNLPLFDPTTGGDVVTRLQRDAKLHIVAGVLLPFLL
PALVQMTASVFDPALLGSPQLLIWCVTGWAMVPASLITRGMARLRVADLIEQKRRSFNHDKDLQVV
>gi|99078736|ref|YP_611994.1| binding-protein-dependent transport systems inner membrane component [Ruegeria sp. TM1040]
MQKAEILQSMGEAISLALALVMSGDADLFEIVGLSLRVSLSATVFACLIGLPIGALVAISRFPGRGACLV
LMNALMGLPPVVVGLLVYLHLSRSGPLGFLGLLYTPTAMIIAQTILIAPIVAALSRQVIEDLHAEYAEQF
RSLCLSRAQAVAALLWDARYSLLTVGLAGFGRAVAEVGAVIIVGGNIDHLTRVMTTAIALETSKGDLALA
LALGVVLLVIALGVNAAVQGLRMSARRQAYV
>gi|99078737|ref|YP_611995.1| ABC transporter related [Ruegeria sp. TM1040]
MSSIDTLSFTSDARRVLEDPNLMPLRVRGLVLQCGDTTILQDLDLDLAPQGCTAIMGPNGAGKSMLLKLL
HGLIEPSTGDITWGGTVPSAVTARQAMVFQKPVLLRRSVAANVDFVLKTRRKSGTTRDALLAHVGLLHKA
RDPARRLSGGEAQRLALARALACEPEVLFLDEATASLDPASVKAIEDLILDASAKGIRIIFVTHDIGQAK
RLADDVVFLQGGRVAEHSPARSFFSDPQSSAARDYLNGRLVF