LOCUS NC_007487 3637 bp DNA circular BCT 19-JUN-2009 DEFINITION Rhodococcus erythropolis PR4 plasmid pREC2, complete sequence. ACCESSION NC_007487 VERSION NC_007487.1 GI:77404588 DBLINK Project:20395 KEYWORDS . SOURCE Rhodococcus erythropolis PR4 ORGANISM Rhodococcus erythropolis PR4 Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Rhodococcus. REFERENCE 1 AUTHORS Sekine,M., Tanikawa,S., Omata,S., Saito,M., Fujisawa,T., Tsukatani,N., Tajima,T., Sekigawa,T., Kosugi,H., Matsuo,Y., Nishiko,R., Imamura,K., Ito,M., Narita,H., Tago,S., Fujita,N. and Harayama,S. TITLE Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4 JOURNAL Environ. Microbiol. 8 (2), 334-346 (2006) PUBMED 16423019 REFERENCE 2 (bases 1 to 3637) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3637) AUTHORS Sekine,M., Tanikawa,S., Omata,S., Saito,M., Fujisawa,T., Tsukatani,N., Tajima,T., Sekigawa,T., Kosugi,H., Baba,S., Matsuo,Y., Nishiko,R., Imamura,K., Ito,M., Narita,H., Tago,S., Fujita,N. and Harayama,S. TITLE Direct Submission JOURNAL Submitted (04-FEB-2005) Director-General Department of Biotechnology, National Institure of Technology and Evaluation, NITE Genome Analysis Center (NGAC), Department of Biotechnology; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan (E-mail:bio@nite.go.jp, URL:http://www.bio.nite.go.jp/, Tel:81-3-3481-1972, Fax:81-3-3481-8424) COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AP008933. Rhodococcus erythropolis strain PR4 has been isolated from the Pacific Ocean. This strain was capable of degrading normal alkanes as well as branched alkanes as sources of carbon and energy (Komukai-Nakamura et al., 1996). This work was supported by NEDO. Please visit our web site. URL:http://www.bio.nite.go.jp/ DOGAN ; Database of Genomes Analyzed at NITE The database contains genome sequence data, physical maps and the genomic and proteomic data of the microorganisms analyzed. URL:http://www.bio.nite.go.jp/dogan/Top. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3637 /organism="Rhodococcus erythropolis PR4" /mol_type="genomic DNA" /strain="NBRC 100887" /isolation_source="seawater" /db_xref="taxon:234621" /plasmid="pREC2" /note="This strain is also named as MBIC01337, PR4.; synonym: Rhodococcus erythropolis NBRC 100887" gene 1..888 /gene="repA" /locus_tag="pREC2_0001" /db_xref="GeneID:3711771" CDS 1..888 /gene="repA" /locus_tag="pREC2_0001" /codon_start=1 /transl_table=11 /product="replication protein RepA" /protein_id="YP_345164.1" /db_xref="GI:77404589" /db_xref="GeneID:3711771" /translation="MKSATGGVLSDRQWADAVLLPHRPFATNNLQRGQYRMSRDDALA MRYVEHSPHALLGSIVIDCDHVDAAMRAFEQPSDHPAPNWVAQSPSGRAHIGWWLGPN HVCRTDSARLTPLRYAHRIETGLKISVGGDFAYGGQLTKNPIHPDWETIYGPATPYTL RQLATIHTPRQMPRRPDRAVGLGRNVTMFDATRRWAYPQWWQHRNGTGRDWDHLVLQH CHAVNTEFTTPLPFTEVRATAQSISKWIWRNFTEEQYRARQAHLGQKGGKATTLAKQE AVRNNARKYDEHTMREAII" gene 888..1172 /gene="repB" /locus_tag="pREC2_0002" /db_xref="GeneID:3711772" CDS 888..1172 /gene="repB" /locus_tag="pREC2_0002" /codon_start=1 /transl_table=11 /product="replication protein RepB" /protein_id="YP_345165.1" /db_xref="GI:77404590" /db_xref="GeneID:3711772" /translation="MGGAKNPVRRKMTAAAAAEKFGASTRTIQRLFAEPRDDYLGRAK ARRDKAVELRKQGLKYREIAEAMELSTGIVGRLLHDARRHGEISAEDLSA" gene complement(1149..1679) /locus_tag="pREC2_0003" /db_xref="GeneID:3711770" CDS complement(1149..1679) /locus_tag="pREC2_0003" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_345166.1" /db_xref="GI:77404591" /db_xref="GeneID:3711770" /translation="MVMAVNTTGTDRSPRPRWSLSEASKRTGVSRTTLLRRIEAGKIP GAIKTDEGWSIGIEDLIGAGIIPDRPSPPEGAHGHGRPDFDHVQRIADLERELAVAHA QRAAAEQVAVERERIIQSQAVTLLILQSKPVDDRPSAVADAAPEAEHHPPAGPSAERR PEPDNPLTWLRRQIFR" repeat_region 3141..3263 /rpt_type=tandem /rpt_unit_seq="cgattcggccggcgct" ORIGIN 1 atgaaatccg caacgggggg cgtgctgagc gatcggcaat gggcggatgc ggtgttgctt 61 ccgcaccggc cgttcgcgac gaacaacctc caacgaggtc agtaccggat gagccgcgac 121 gacgcattgg caatgcggta cgtcgagcat tcaccgcacg cgttgctcgg atccatcgtc 181 atcgactgcg atcacgtcga cgccgcgatg cgcgcattcg agcaaccatc cgaccatccg 241 gcgccgaact gggtcgcaca atcgccgtcc ggccgcgcac acatcggatg gtggctcggc 301 cccaaccacg tgtgccgcac cgacagcgcc cgactgacgc cactgcgcta cgcccaccgc 361 atcgaaaccg gcctcaagat cagcgtcggc ggcgatttcg cgtatggcgg gcaactgacc 421 aaaaacccga ttcacccgga ttgggagacg atctacggcc cggccacccc gtacacattg 481 cggcagctgg ccaccatcca cacaccccgg cagatgccgc gtcggcccga tcgggccgtg 541 ggcctgggcc gcaacgtcac catgttcgac gccacccggc gatgggcata cccgcagtgg 601 tggcaacacc gaaacggaac cggccgcgac tgggaccacc tcgtcctgca gcactgccac 661 gccgtcaaca ccgagttcac gacaccactg ccgttcaccg aagtacgcgc caccgcgcaa 721 tccatctcca aatggatctg gcgcaatttc accgaagaac agtaccgagc ccgacaagcg 781 catctcggtc aaaaaggcgg caaggcaacg acactcgcca aacaagaagc cgtccgaaac 841 aatgcaagaa agtacgacga acatacgatg cgagaggcga ttatctgatg ggcggagcca 901 aaaatccggt gcgccgaaag atgacggcag cagcagcagc cgaaaaattc ggtgcctcca 961 ctcgcacaat ccaacgcttg tttgctgagc cgcgtgacga ttacctcggc cgtgcgaaag 1021 ctcgccgtga caaagctgtc gagctgcgga agcaggggtt gaagtaccgg gaaatcgccg 1081 aagcgatgga actctcgacc gggatcgtcg gccgattact gcacgacgcc cgcaggcacg 1141 gcgagatttc agcggaagat ctgtcggcgt aaccaagtca gcgggttgtc gggttccggc 1201 cggcgctcgg cactcggacc ggccggcgga tggtgttctg cctctggcgc agcgtcagct 1261 accgccgaag gcctgtcatc gaccggcttc gactgaagta tgagcaacgt cacagcctgt 1321 gattggatga tccgctcacg ctcgaccgct acctgttcag ctgccgcccg ctgggcatga 1381 gcaacggcca actctcgttc aagatccgcg atccgctgga catggtcaaa atcagggcgg 1441 ccatgaccgt gggcaccttc gggcgggctg ggtctgtccg gaatgattcc agctccgatg 1501 aggtcttcga ttccgatcga ccagccttca tcggttttga tcgcacccgg aattttgccg 1561 gcttcaattc tccggagcag cgtcgtgcgg ctgacgcctg tccgtttgga cgcctcggac 1621 agtgaccaac gaggacgtgg cgaccggtca gttcctgtgg tgttcacggc catgaccata 1681 acgcgaattg tgcttgtcca ggcggaccac actcacgcgt gtaccgcttc tacttttcgc 1741 caatttcgca gtcgcccaac ccttttgcgg catgtaacaa gttgcagcgg ccagccgatt 1801 cgggcaagca tcgggttgct cgcttttaac tcgtgagcac cacgattagg ggaggaaact 1861 gtgatcggaa aacgagttct gacaatggcc gccgtgtgcg cagcaactac cggagttctg 1921 ggaatggggg tgggggtcgc aagtgcagac tctttgccgc cctctgtgtg ttcatctgca 1981 accggatgct ccggaaacgg aaacgcaaac cccatcaacg gcaccaacac aatcaaggat 2041 cgcgcgggct gcgctatcgg actgggtatg aatgcgttcc ccgctacctg gccggtacga 2101 gtaatcggcg tcggcgccgg cgcttacttc ggctgcaact agaaggatct ccggtcacgc 2161 acctaaagtt gcagtgtgaa cactcagaag agaaggcagt tgagctggcg ggccgcgctc 2221 ggcatcggtg tgttgtacat ccttgtcggc ctgttcttcc tcagcaacgg gacgacaacc 2281 gcggctgtca ttttcgtcat tttgggcgta atcacagcac tcgttccgtg ggtccagaaa 2341 tggtggacag cacgatccgc agtcaaacac tgacgcgata gaggcctgac ctagaaactc 2401 cccggatgac acgatgtcgt gtcatccggg gagtttcttt tgcgctcagt agcaagcagt 2461 tcagcggcat cggcgcttct cgcacacgca gtggcagcct attcgcggac gtggacagcg 2521 cggatgaggt ctgccagggc gcgccgggtt cggtcgtgtc gggggtcgtg tgtgagctgc 2581 ccggtgcgca cttgttcggt gagtgcggtg atcacttccg cacaggctcg ggggctgccc 2641 agcacgacgg gcaccgccgt catcggaaca ctcggcagta tcgcggccgt cgtcctcagt 2701 cgttgaccgg cccagcgcag cgccccggaa cgggcaccgc gccagcgcgg tcagacttag 2761 ggcacctaag gcactatctt gctccgccag tccgccgccg agctcctcgt gatcgctcgc 2821 gcacccgccc gaccagggcg gaatccaaaa ccccggggtt ttgcaatatc ttgctccgct 2881 cgaggtgacc gaacaggcga gaatttctcc gcgcaccacc gacacatttc gaccgaagga 2941 catcgatgct tccggaccga ctgaccgcgc tcgcctccgc cgcacacaac gccggagcac 3001 gtgagaacct ccacaacctc ggcggcgtcc accacgacgc acaccacgcc accctcaccc 3061 tcgatcgcta cacacccgag aagctcccag cgtcctcctg ggccgcgata ctcgaccacc 3121 acgcacgcac accgcactaa cgattcggcc ggcgctcgat tcggccggcg ctcgattcgg 3181 ccggcgctcg attcggccgg cgctcgattc ggccggcgct cgattcggcc ggcgctcgat 3241 tcggccggcg ctcgattcgg ccgagcagaa gagtgaacaa ccaccgacca cgcttccgct 3301 ctgcgcgccg tacccgacct acctcccgca gctcgagcag ctcccgggag taccgccgta 3361 ctcacccacc tgtgctcacc atccaccgac gcaaagccca acccgagcac acctcttgca 3421 ccaaggtgcc gaccgtggct ttccgctcgc agaggttcca gaagaaatcg aacgatccag 3481 cgcggcaagg ttcaaaaagc aggggttggt ggggaggaga ttttgggggt gtcgccggga 3541 tacctgatat ggctttgttt tgcgtagtcg aataattttc catatggcct cggcgcgtcg 3601 gactcgaata gttgatgtgg gcgggcacag ttgcccc //