LOCUS NC_007430 7510 bp DNA circular BCT 30-MAR-2006 DEFINITION Chlamydia trachomatis A/HAR-13 plasmid pCTA, complete sequence. ACCESSION NC_007430 VERSION NC_007430.1 GI:76789623 DBLINK Project:13885 KEYWORDS . SOURCE Chlamydia trachomatis A/HAR-13 ORGANISM Chlamydia trachomatis A/HAR-13 Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia. REFERENCE 1 (bases 1 to 7510) AUTHORS Carlson,J.H., Porcella,S.F., McClarty,G. and Caldwell,H.D. TITLE Comparative Genomic Analysis of Chlamydia trachomatis Oculotropic and Genitotropic Strains JOURNAL Infect. Immun. 73 (10), 6407-6418 (2005) PUBMED 16177312 REFERENCE 2 (bases 1 to 7510) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7510) AUTHORS Carlson,J.H., Porcella,S.F., McClarty,G. and Caldwell,H.D. TITLE Direct Submission JOURNAL Submitted (23-FEB-2005) Laboratory of Intracellular Parasites, Rocky Mountain Laboratories, National Institutes of Allergy and Infectious Disease, National Institutes of Health, 903 South 4th Street, Hamilton, MT 59840, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000052. Sequencing Center: Integrated Genomics, Inc., 2201 W. Campbell Park Dr., Chicago, IL 60612. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7510 /organism="Chlamydia trachomatis A/HAR-13" /mol_type="genomic DNA" /strain="A/HAR-13" /db_xref="taxon:315277" /plasmid="pCTA" gene complement(25..942) /locus_tag="pCTA_0001" /old_locus_tag="pCTA0001" /db_xref="GeneID:3687418" CDS complement(25..942) /locus_tag="pCTA_0001" /old_locus_tag="pCTA0001" /codon_start=1 /transl_table=11 /product="virulence plasmid integrase pGP7-D" /protein_id="YP_328709.1" /db_xref="GI:76789624" /db_xref="GeneID:3687418" /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSHLTRKNYASGINFLVSL EILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLT KGYIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQ GIRKLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNG RVFVSKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMR ISCLSSRQSVCSYCSGEEVSPLVQTPTIL" gene complement(1184..1927) /locus_tag="pCTA_0002" /old_locus_tag="pCTA0002" /db_xref="GeneID:3687419" CDS complement(1184..1927) /locus_tag="pCTA_0002" /old_locus_tag="pCTA0002" /codon_start=1 /transl_table=11 /product="virulence plasmid protein pGP6-D" /protein_id="YP_328710.1" /db_xref="GI:76789625" /db_xref="GeneID:3687419" /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQS LDRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDH FSSTTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKG DLKTKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEI LRIICSGVSLSSYNENLLQQLFELFKQKS" gene complement(1924..2655) /locus_tag="pCTA_0003" /old_locus_tag="pCTA0003" /db_xref="GeneID:3687420" CDS complement(1924..2655) /locus_tag="pCTA_0003" /old_locus_tag="pCTA0003" /codon_start=1 /transl_table=11 /product="virulence plasmid ParA family protein pGP5-D" /protein_id="YP_328711.1" /db_xref="GI:76789626" /db_xref="GeneID:3687420" /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSNQKGLHDIVY TSNDLKSIICETKKDSVDLIPASFLSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICI IDTPPSLGGLTKEAFVAGDKLIVCLTPEPFSILGLQKIREFLSSVGKPEEEHILGIAL SFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAED ILKLTHEIANILHIEYERDYSQRTT" gene complement(2746..3054) /locus_tag="pCTA_0004" /old_locus_tag="pCTA0004" /db_xref="GeneID:3687421" CDS complement(2746..3054) /locus_tag="pCTA_0004" /old_locus_tag="pCTA0004" /codon_start=1 /transl_table=11 /product="virulence plasmid protein pGP4-D" /protein_id="YP_328712.1" /db_xref="GI:76789627" /db_xref="GeneID:3687421" /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLE LYHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" gene complement(3124..3918) /locus_tag="pCTA_0005" /old_locus_tag="pCTA0005" /db_xref="GeneID:3687422" CDS complement(3124..3918) /locus_tag="pCTA_0005" /old_locus_tag="pCTA0005" /codon_start=1 /transl_table=11 /product="virulence plasmid protein pGP3-D" /protein_id="YP_328713.1" /db_xref="GI:76789628" /db_xref="GeneID:3687422" /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVA AKMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDNTVQ DILDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSSIETLLGGTEIGKFTVTPKSSG SMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTP TTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" gene complement(3980..5044) /locus_tag="pCTA_0006" /old_locus_tag="pCTA0006" /db_xref="GeneID:3687423" CDS complement(3980..5044) /locus_tag="pCTA_0006" /old_locus_tag="pCTA0006" /codon_start=1 /transl_table=11 /product="virulence plasmid protein pGP2-D" /protein_id="YP_328714.1" /db_xref="GI:76789629" /db_xref="GeneID:3687423" /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVI GLDFLSSHYHALAAIQRLLTATNYKGNTKGVILSRESNSFQFEGWIPRIRFTKTEFLE AYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTL SPIIRIYEGWEGLTDEENIDIDLTPFNSPSTRKHKGFVVEPCPILVDQIESYFVIKPA NVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYIL RMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERF EEITKKSKEQMEQLEQESIN" gene complement(5038..6393) /gene="dnaB_2" /locus_tag="pCTA_0007" /old_locus_tag="pCTA0007" /db_xref="GeneID:3687424" CDS complement(5038..6393) /gene="dnaB_2" /locus_tag="pCTA_0007" /old_locus_tag="pCTA0007" /EC_number="3.6.1.-" /codon_start=1 /transl_table=11 /product="replicative DNA helicase" /protein_id="YP_328715.1" /db_xref="GI:76789630" /db_xref="GeneID:3687424" /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCS HHKNIFIVFKYLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVS HTVFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSI RSARGRSIYDIFSQSEIGVLARIKKRRAAFSENQNSFFDGFPTGYKDIDDKGVILAKG NFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGE KLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIQLLRKEDRVDVIFI DYLQLINSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSD LRDSGQIEQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKV W" gene 6492..7484 /locus_tag="pCTA_0008" /old_locus_tag="pCTA0008" /db_xref="GeneID:3687425" CDS 6492..7484 /locus_tag="pCTA_0008" /old_locus_tag="pCTA0008" /codon_start=1 /transl_table=11 /product="virulence plasmid integrase pGP8-D" /protein_id="YP_328716.1" /db_xref="GI:76789631" /db_xref="GeneID:3687425" /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEV IMHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKT SWTEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSL QTASFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQT EKRIIITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKI TPHVLRATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI" ORIGIN 1 aatatgaata taattttaat tatatcacaa tattgtgggt gtttgtacta gaggacttac 61 ctcttcccca gaacaataag aacacacact ttgtctcgat gagagacagg aaatacgcat 121 gatttcctca tcttttaatc ctatttgctt taaatgaatc aaagcgcttg cacgaagtac 181 tctgggagta atttttattt tcatagcact atggaactct gcaagcctaa aattatgcgc 241 aacctgactt gttgttacag gaatccctat tttagaaaca aatactctcc catttctccc 301 acaagtgtat ttttgcaact cttccattaa gctgatagga aatgtgatta gaattttggt 361 ttctttattc tgtctttttt taatgcgaaa ggaaatctga ttggatgcaa aaaatagatc 421 gtctgtgcgc aaagacaaaa tttcgtctaa cttacggatc ccttgtacaa tcaatttacc 481 gattaaatag tctctataat tcactatccg gagcgcttca aaaaaaactg tccattcctg 541 cttagaaatc gattctgttt tgattttgtc tcggatttta aaaaatgtag tgtttccaaa 601 atctttcaat ggaatagcgg gtttaatata tcccttggtc aatctataca aaaactttgt 661 gaaagatatg tagcatgccg ctctagcctg tttagaggcc tctgaaacga cttttccatt 721 aaaaacatct agagacttga ttttaaacaa agattcgctg tggtcaagag aaatagcctt 781 tatcaaggtt tccgataaat ccagaatctc taaagaaaca agaaagttaa tcccagacgc 841 ataatttttt ctagttagat gagataaagt agataaccaa atttccgacg cgtccccaaa 901 agttaagaac aatctacttt tatggaaagc catcgagccc attttcttaa ccaaagctat 961 tcaaaatcgg agctctaaga ttttaagaaa ttttttaaca aaagtccatt atgaccaagt 1021 ctaccaccct accaccaaga gttgcaaagt ctaccaccaa gagttgcaaa gtctaccacc 1081 aagagttgca aagtctacca ccaagagttg caaatctctc tcgtaaaatc aaatccctaa 1141 ataaatatat atataataaa tatatatatg agctgacgga ggatcagctc ttttgcttaa 1201 aaagttcaaa aagctgttgt agaagatttt cgttatagga ggacaaagaa actccggaac 1261 atatgatgcg aagtatctct attaagaaat cagataattg gcgattcttc tctgaatcag 1321 acttatctat cgtttctcta acgtctttgt ttctagatga aggaagaaat tgatccaaca 1381 cccttatcgc cgatgagttc gacattccac atactttccc tatcacatcg accttggttt 1441 ttaaatcgcc ttttctagcg gccaaaatat atgcggattt ataggggatc gattgaaact 1501 ctttttgtag agtttggttg gggaggttta taaaaagctc gtaatatgca agagcattgt 1561 aagcagaaga cttagttcta aaaactaact ctatccaaga tgaaaaagtt gttgaggaga 1621 agtgatcctt actcaggatt tttctagcat tatagatttt ttctcctaaa agaagtacgt 1681 gttgcttctg tatggatttt atctgaccag taagcagttt taccgctagg atgtcttctt 1741 gataaaattc ttcatccgaa tagttttggg actctgataa aaataatcga tccaaactct 1801 gactttcctc agaattcaaa gttgctgaga atagttcaat ggaaggaagt gtcttcttaa 1861 aatctagaga agcggcagtt tgattttttt taaaaaagac atccgcttct ttttttagtt 1921 tgttcacgtt gtcctctgag agtaatctcg ttcatattcg atatgcaaaa tatttgctat 1981 ttcatgcgtt aacttcagaa tatcttctgc ggccctagaa tttggataga cattagctac 2041 agaatcttct ttaagaagag aacggctgag agaaatatct cgacgaattt ttgttgaaaa 2101 aagcttgttt ttgtaaatag actcgataat gtctatatac atttggttag tcgagttacg 2161 atcatcccaa aaagacaaag ctattccaag aatgtgttct tcttcaggtt ttccgaccga 2221 acttaagaat tcacgtatct tttgtaaccc tagaatagaa aaaggttctg gagttaaaca 2281 aacaattaat ttgtctcctg caacaaaagc ttctttcgtt aaccctccta ggctaggtgg 2341 agtgtctatt atgcagatgt cataaaaagg agcgcagtac tcattcagaa ataactttaa 2401 gttgttacta ggtcctctat gaatatccaa ttctctaaac tgttcggata aaaatgatgc 2461 aggaattagg tccacactat ctttttttgt ttcgcaaatg attgatttta aatcgtttga 2521 tgtgtatact atgtcgtgca agcctttttg gttacttctg acactagccc ccaatccaga 2581 agataaattg gattgcgggt ctaggtcagc aagtaacact tttttcccta aaaattgggc 2641 caagttgcat cccacgttta gagaaagtgt tgtttttcca gttcctccct taaaagagca 2701 aaaaactaag gtgtgcaaat caactccaac gttagagtaa gttgtctatt cagccttgga 2761 aaacatgtct tttctagaca agataagcat aatcaaagcc ttttttagct ttaaactgtt 2821 atcctctaat ttttcaagaa caggagagtc tgggaataat cctaaagagt tttctatttg 2881 ttgaagcagt cctagaatta gtgagacact tttatggtag agttctaagg gagaatttaa 2941 gaaagttact ttttccttgt ttactcgtat ttttaggtct aattcgggga aatctttttt 3001 cacatcttta acaattttaa taaaatcgtc cctcactttt cttttatttt gcataacaaa 3061 ccccgtaatt cgaactgttt tctctaaata taaaacctat aagaaaaatc caataaaaat 3121 tgtttaagcg tttgtttgag gtattacttc caaaaaagat acattagaag tatttgttat 3181 tcctaaaata tcattgccat tagaaagggc attaacccat accacaccgc tttctaaacc 3241 gcctacacgt aatgaatacg ttgttggagt caatcctgta ttagtaatgc tggttcttag 3301 actacataaa ttaggaacgc ctgatgagta tccataacta atcgcgcagg gcttagaatc 3361 accttctcgt accaaagcta gaacaacgcc gccttccatt cttgatgcaa taatatctgc 3421 tgagactaag aacatgctcc cagagctttt gggtgtgact gtgaattttc ctatttcagt 3481 tcctcctaat aaagtttcaa tgctactggg agtgaataac ccgttgcatt gaattttatt 3541 agtgattgga aagttgttaa aagctttcaa caaacctaga gaagggtctg ttttgatttt 3601 gtctaaaata tcttggactg tattatcaac aatagtatca gcaattccat caagaatttg 3661 atctcccaac ttttctagaa taagctggta agctttttcc gcatccaaac caattgtaat 3721 agaagcattg gttgatgaat tattggagac tgttaaagat attccatcag aagctgtcat 3781 tttggctgcg acaggtgttg atgttgtccc aaggattatt tgctggtcct tgagcggctc 3841 tgtcatttgc ccaactttga tattatcagc aaagacgcag ttttcagtgt tatacaaata 3901 aaaaccagaa tttcccattt taaaactctt ttttattttg agctttaaat aaattaggtt 3961 tttagtttca agcttgctat taattaatag attcttgttc taattgttcc atttgttctt 4021 tagatttctt agttatttct tcaaagcgct ctttatttag atatagaatt tcttttttag 4081 agagtttaga agaatccaga aattcaatac gttttcttct agataaccag ccaagctgaa 4141 tggcgatttc tatacattta tcgatagcta actcgatttt tttccagttc cttgtacaga 4201 tgtaccgatt catccttaaa atatatgcaa gacttttaac gttaacgttt aataacaagt 4261 tttctggcca agaattatcc ttagttaatt ttcgtctctt tttcgcagct gctgtaatca 4321 cccagtcgat aaatgtgtaa gcatactttg atgcatttgg gaaacgcatt tttatttctt 4381 ggtatacatt tgcaggcttg attacaaagt aggattctat ttgatctacc aagataggac 4441 atggctctac aacgaaccct ttatgtttcc gtgtagatgg tgaattaaaa ggtgttaagt 4501 ctatatctat attttcttcg tcagttaaac cttcccatcc ttcgtaaatc ctaatgatcg 4561 gagaaagagt ttggtaacgg tctactattt gtgttccatt agtccatcga gttctagttg 4621 ccactattaa aaacggttga tgtcctaaat ggtataaggc ttctaaagca gtttcagctt 4681 cttttccact aaactcatac ttatttctgg atgttttata ccgcttaact ccataagcct 4741 ctaagaattc agtttttgta aaacggattc ttggtatcca tccttcaaat tgaaaactat 4801 ttgattctct ggataaaata accccttttg tgttcccctt gtaattcgtt gcggtcagta 4861 atctttggat agctgctaat gcatggtaat gagatgaaag aaaatcaaga cctataactt 4921 ctaccatccc attttgagcc aatttgggag atatcttaat agattgacca ggtcttcttc 4981 caaacttctg attttcaagg tggataggac ttttgatgaa gtggcagtta ctataattta 5041 ccatactttt ttaatagcgg agaatttact aatttttgga tcgaaatgta ataccgaaga 5101 gaaaaccgat ccatgtctat ttttcccaac agttatctca caattagaag acgattcctt 5161 cctattgata aacaaaatca catctgcgtc ttgctctatt tgaccgctgt ctcgcaaatc 5221 tgaaagcatg ggaactttat ttgctctatc ctcaactttt ctagatagtt gggataaaca 5281 aactatagga atgtttagct ctgaggctaa acctcttaag gttctagata tatctgctat 5341 ttcattttga cgattttctc caaccgatga gttgatcaac tgcaagtaat cgataaatat 5401 tacgtctact cgatcttctt ttctcagcaa ctggatctga ttcgcgatta aattaagctt 5461 atactgacta tcactgcaga tataaaaatg tgattctcta actgtttctc cagcttcttc 5521 tactcggaat aattcttctt tagagagatc ccctctttgt aatttttcac cagatattcc 5581 tgttaaatta gcaataatcc gctcaacaat ttgacctgcg ctcatttcta gagataggaa 5641 accaactcta cgctgttgag taaccgcaag atttatcgcc atgtctatag ctaaagctgt 5701 tttccctata gatggcctag ctgctataat cacgaaatta cctttagcta agataactcc 5761 tttatcatca atatccttgt atcctgttgg gaagccatca aagaaagaat tttgattctc 5821 agagaacgct gctcgtcttt tttttatacg agccagcact ccaatttctg actgtgagaa 5881 tatatcataa atagaccggc ctctagcgct gcgaatagaa aaagtctttg ctatagcact 5941 atcaagcctt ccctttatac gctcaagcaa tagaaacgga gatctacgca atggattttc 6001 attgtactca ttaaacgagc ggaaaatgaa attgctcaaa ttttcttcag cgctacacac 6061 gctcaaatca tcgaggaaaa ccgtatgaga aacggatcta agcttgtcat ttgataaagc 6121 atcatgcaac attaacccga gatacgattt gtccatatct ttgatacgac gccgcaaaag 6181 ctcttcccaa gccgagtcta cagttatagg taatccattg tcttttaagt atttaaatac 6241 tatgaatatg tttttatgat gggaacactt aaactcataa ttagcaagct gcctcagaat 6301 atactcagta gagtcttcaa atatcagagc tttacctaac aacgcatact cgatatcttg 6361 catgcgattt tctatttcgg aacgagtttt catgtttata taaaaaaata ccgagcgtgc 6421 tatcctgtta acaacctgat tatttcacta atcaggacat tttgcggata ggttatatca 6481 cgagggattt catgggtaaa gggattttat ctttgcagca agaaatgtcg ttagaatata 6541 gcgaaaagtc ttatcaggaa gttttaaaaa ttcgccaaga atcctattgg aaacgcatga 6601 aaagcttctc cttattcgaa gttattatgc attggaccgc atcactcaac aaacatactt 6661 gtagatcata tcgaggatct tttttgtctt tagaaaagat tggtctattg tctttggata 6721 tgaatctgca agagttttcc cttttaaatc ataatctaat cctagatgcg attaaaaaag 6781 tttcctctgc caagacttct tggaccgaag gtactaaaca agttcgagca gcaagctata 6841 tttccttaac aagattccta aacaggatga ctcaaggaat agtcgctata gcgcaacctt 6901 ctaaacaaga aaatagtcga acatttttta aaaccaggga aatagtaaaa acggatgcga 6961 tgaacagttt gcaaacagca tccttcctaa aagagctaaa aaaaatcaac gcccgggatt 7021 ggttgatcgc ccagacaatg ctccaaggag gtaaacgctc ctctgaagtc ttaagcttgg 7081 agattagtca gatttgtttc caacaagcta ccatttcttt ctcccagctt aagaaccgtc 7141 agacagaaaa gaggattatt ataacttatc ctcagaagtt tatgcacttt ctacaagagt 7201 acatcggtca acgaagaggt tttgtcttcg taactcgctc cggaaaaatg gtggggttaa 7261 ggcaaatcgc ccgcacgttc tctcaagcag gactacaagc tgcaatccct tttaagataa 7321 ccccgcacgt gcttcgagca accgctgtga cggagtacaa acgcctaggg tgctcagact 7381 ccgacataat gaaggtcacg ggacacgcaa ccgcaaagat gatatttgcg tacgataaat 7441 cctctcgaga agacaatgct tcaaagaaga tggctctaat atagcctaaa ggtgtttttt 7501 ctggcaacag //