LOCUS NC_006629 4440 bp DNA linear BCT 06-OCT-2005 DEFINITION Staphylococcus aureus subsp. aureus COL plasmid pT181, complete sequence. ACCESSION NC_006629 VERSION NC_006629.2 GI:77102894 DBLINK Project:238 KEYWORDS . SOURCE Staphylococcus aureus subsp. aureus COL ORGANISM Staphylococcus aureus subsp. aureus COL Bacteria; Firmicutes; Bacillales; Staphylococcus. REFERENCE 1 (bases 1 to 4440) AUTHORS Gill,S.R., Fouts,D.E., Archer,G.L., Mongodin,E.F., Deboy,R.T., Ravel,J., Paulsen,I.T., Kolonay,J.F., Brinkac,L., Beanan,M., Dodson,R.J., Daugherty,S.C., Madupu,R., Angiuoli,S.V., Durkin,A.S., Haft,D.H., Vamathevan,J., Khouri,H., Utterback,T., Lee,C., Dimitrov,G., Jiang,L., Qin,H., Weidman,J., Tran,K., Kang,K., Hance,I.R., Nelson,K.E. and Fraser,C.M. TITLE Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain JOURNAL J. Bacteriol. 187 (7), 2426-2438 (2005) PUBMED 15774886 REFERENCE 2 (bases 1 to 4440) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-JAN-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4440) AUTHORS Gill,S.R., Fouts,D.E., Archer,G.L., Mongodin,E.F., DeBoy,R.T., Ravel,J., Paulsen,I.T., Kolonay,J.F., Dodson,R.J., Durkin,A.S., Brinkac,L., Beanan,M., Daugherty,S.C., Madupu,R., Angiuoli,S.V., Haft,D.H., Vamathevan,J., Khouri,H., Utterback,T., Lee,C., Dimitrov,G., Jiang,L., Qin,H., Weidman,J., Tran,K., Kang,K., Hance,I.R., Nelson,K.E. and Fraser,C.M. TITLE Direct Submission JOURNAL Submitted (12-NOV-2004) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000045. On Oct 5, 2005 this sequence version replaced gi:57659839. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4440 /organism="Staphylococcus aureus subsp. aureus COL" /mol_type="genomic DNA" /strain="COL" /sub_species="aureus" /db_xref="taxon:93062" /plasmid="pT181" gene 32..976 /gene="repC" /locus_tag="SAA0001" /db_xref="GeneID:3237996" CDS 32..976 /gene="repC" /locus_tag="SAA0001" /note="identified by similarity to EGAD:10909; match to protein family HMM PF02486" /codon_start=1 /transl_table=11 /product="replication initiation protein" /protein_id="YP_184747.1" /db_xref="GI:57659842" /db_xref="GeneID:3237996" /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLS FDAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADS WDRRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDK AVKKTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELK RDMVDYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLI KEISPVDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK" gene 1138..2517 /gene="tet" /locus_tag="SAA0002" /db_xref="GeneID:3237997" CDS 1138..2517 /gene="tet" /locus_tag="SAA0002" /note="identified by similarity to EGAD:6626; match to protein family HMM PF07690" /codon_start=1 /transl_table=11 /product="tetracycline resistance protein" /protein_id="YP_184748.1" /db_xref="GI:57659841" /db_xref="GeneID:3237997" /translation="MFSLYKKFKGLFYSVLFWLCILSFFSVLNEMVLNVSLPDIANHF NTTPGITNWVNTAYMLTFSIGTAVYGKLSDYINIKKLLIIGISLSCLGSLIAFIGHNH FFILIFGRLVQGVGSAAFPSLIMVVVARNITRKKQGKAFGFIGSIVALGEGLGPSIGG IIAHYIHWSYLLILPMITIVTIPFLIKVMVPGKSTKNTLDIVGIVLMSISIICFMLFT TNYNWTFLILFTIFFVIFIKHISRVSNPFINPKLGKNIPFMLGLFSGGLIFSIVAGFI SMVPYMMKTIYHVNVATIGNSVIFPGTMSVIVFGYFGGFLVDRKGSLFVFILGSLSIS ISFLTIAFFVEFSMWLTTFMFIFVMGGLSFTKTVISKIVSSSLSEEEVASGMSLLNFT SFLSEGTGIAIVGGLLSLQLINRKLVLEFINYSSGVYSNILVAMAILIILCCLLTIIV FKRSEKQFE" gene 2703..3944 /gene="pre" /locus_tag="SAA0003" /db_xref="GeneID:3237995" CDS 2703..3944 /gene="pre" /locus_tag="SAA0003" /note="identified by similarity to EGAD:21785; match to protein family HMM PF01076" /codon_start=1 /transl_table=11 /product="plasmid recombination enzyme" /protein_id="YP_184749.1" /db_xref="GI:57659840" /db_xref="GeneID:3237995" /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLN YDLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQ FFEYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALT AFQDRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIK QKNDKLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQK QIKAAQDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKP LKENIEIALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELY SEQEQQQEQQKNQKRDRGMHL" ORIGIN 1 aacgaaattg agattaagga gtcgattttt tatgtataaa aacaatcatg caaatcattc 61 aaatcatttg gaaaatcacg atttagacaa tttttctaaa accggctact ctaatagccg 121 gttggacgca catactgtgt gcatatctga tccaaaatta agttttgatg caatgacgat 181 cgttggaaat ctcaaccgag acaacgctca agccctttct aaatttatga gtgtagagcc 241 ccaaataaga ctttgggata ttcttcaaac aaagtttaaa gctaaagcac ttcaagaaaa 301 agtttatatt gaatatgaca aagtgaaagc agatagttgg gatagacgta atatgcgtat 361 tgaatttaat ccaaacaaac ttacacgaga tgaaatgatt tggttaaaac aaaatataat 421 aagctacatg gaagatgacg gttttacaag attagattta gcctttgatt ttgaagatga 481 tttgagtgac tactatgcaa tgtctgataa agcagttaag aaaactattt tttatggtcg 541 taatggtaag ccagaaacaa aatattttgg cgtgagagat agtaatagat ttattagaat 601 ttataataaa aagcaagaac gtaaagataa tgcagatgct gaagttatgt ctgaacattt 661 atggcgtgta gaaatcgaac ttaaaagaga tatggtggat tactggaatg attgctttag 721 tgatttacat atcttgcaac cagattggaa aactatccaa cgcactgcgg atagagcaat 781 agtttttatg ttattgagtg atgaagaaga atggggaaag cttcacagaa attctagaac 841 aaaatataag aatttgataa aagaaatttc gccagtcgat ttaacggact taatgaaatc 901 gactttaaaa gcgaacgaaa aacaattgca aaaacaaatc gatttttggc aacatgaatt 961 taaattttgg aaatagtgta catattaata ttactgaaca aaaatgatat atttaaacta 1021 ttctaattta ggaggatttt tttatgaagt gtctatttaa aaatttgggg aatttatatg 1081 aggtgaaaga ataatttacc cctataaact ttagtcacct caagtaaaga ggtaaaattg 1141 tttagtttat ataaaaaatt taaaggtttg ttttatagcg ttttattttg gctttgtatt 1201 ctttcatttt ttagtgtatt aaatgaaatg gttttaaatg tttctttacc tgatattgca 1261 aatcatttta atactactcc tggaattaca aactgggtaa acactgcata tatgttaact 1321 ttttcgatag gaacagcagt atatggaaaa ttatctgatt atataaatat aaaaaaattg 1381 ttaattattg gtattagttt gagctgtctt ggttcattga ttgcttttat tggtcacaat 1441 cactttttta ttttgatttt tggtaggtta gtacaaggag taggatctgc tgcattccct 1501 tcactgatta tggtggttgt agctagaaat attacaagaa aaaaacaagg caaagccttt 1561 ggttttatag gatcaattgt agctttaggt gaagggttag gtccttcaat agggggaata 1621 atagcacatt atattcattg gtcttaccta cttatacttc ctatgattac aatagtaact 1681 ataccttttc ttattaaagt aatggtacct ggtaaatcaa caaaaaatac attagatatc 1741 gtaggtattg ttttaatgtc tataagtatt atatgtttta tgttatttac gacaaattat 1801 aattggactt ttttaatact cttcacaatc ttttttgtga tttttattaa acatatttca 1861 agagtttcta acccttttat taatcctaaa ctagggaaaa acattccgtt tatgcttggt 1921 ttgttttctg gtgggctaat attttctata gtagctggtt ttatatcaat ggtgccttat 1981 atgatgaaaa ctatttatca tgtaaatgta gcgacaatag gtaatagtgt tatttttcct 2041 ggaaccatga gtgttattgt ttttggttat tttggtggtt ttttagtgga tagaaaagga 2101 tcattatttg tttttatttt aggatcattg tctatctcta taagtttttt aactattgca 2161 ttttttgttg agtttagtat gtggttgact acttttatgt ttatatttgt tatgggcgga 2221 ttatctttta ctaaaacagt tatatcaaaa atagtatcaa gtagtctttc tgaagaagaa 2281 gttgcttctg gaatgagttt gctaaatttc acaagttttt tatcagaggg aacaggtata 2341 gcaattgtag gaggtttatt gtcactacaa ttgattaatc gtaaactagt tctggaattt 2401 ataaattatt cttctggagt gtatagtaat attcttgtag ccatggctat ccttattatt 2461 ttatgttgtc ttttgacgat tattgtattt aaacgttctg aaaagcagtt tgaatagtta 2521 tattatattt tggtttagaa ctatgagtgg ctagcatttt gccactcatt ttttgcgtta 2581 gcaaaaacag gtttaagcct cgcagagcac acgtattaac gacttattaa aaataagtct 2641 agtgtgttag acttaaacta ttaaatacac atgaaacctt tgtgcttagg agtgattttt 2701 atatgtctta ttccattgtt agagtttcaa aagttaaatc tggaacaaat acaacgggca 2761 tacaaaaaca tgttcaaaga gaaaataata attatgaaaa tgaagatata gaccatagta 2821 aaacttactt aaattatgat ttggtaaatg ctaataaaca gaattttaat aacttgattg 2881 atgaaaaaat cgaacagaat tatacaggca aaagaaaaat tagaacagac gcgattaaac 2941 acattgatgg tttaattaca tcagacaatg atttctttga taatcaaacg ccagaagata 3001 caaagcagtt ttttgaatat gctaaagagt ttttagaaca agaatacggt aaagataatt 3061 tattatatgc aacagttcac atggacgaaa aaacaccaca tatgcattat ggcgttgttc 3121 caataactga tgatggtcgt ttaagtgcta aagaagttgt aggtaataaa aaagctttaa 3181 cagcgtttca agatagattt aatgagcatg ttaaacaacg aggatatgat ttagaacgtg 3241 ggcaatcaag acaagtaaca aatgctaaac atgagcaaat aagtcagtat aaacaaaaaa 3301 cagaatatca taagcaagaa tatgaacgtg agagccaaaa aacagaccat ataaagcaaa 3361 agaacgataa attaatgcaa gagtaccaaa aatcgttaaa tacgcttaaa aagcctataa 3421 atgttccgta tgagcaagaa actgaaaaag taggtggttt atttagcaaa gaaatacaag 3481 aaactggaaa tgttgtaata agccaaaaag atttcaatga atttcagaaa cagataaaag 3541 ctgctcaaga tatttcggaa gattacgagt atataaagtc tggtagagcc ttagatgata 3601 aagataagga aatacgagag aaagatgatt tattaaataa agcagttgag cgtattgaaa 3661 acgcagacga taattttaac caactttacg aaaatgcaaa gccacttaaa gagaatatag 3721 aaatagcgtt aaagctttta aaaatcttac taaaagagtt agaacgagtt ttaggaagaa 3781 atacctttgc ggaaagagtt aataagttaa cagaagatga accaaaacta aatggtttag 3841 caggaaactt agataaaaaa atgaatccag aattatattc agaacaggaa cagcaacaag 3901 aacaacaaaa gaatcaaaaa cgagatagag gtatgcactt atagaacatg catttatgcc 3961 gagaaaactt attggttgga atgggctatg tgttagctaa cttgttagcg agttggttgg 4021 acttgaattg ggattaatcc caagaaagta ccaactcaac aacacataaa gccctgtagg 4081 ttccgaccaa taaggaaatt ggaataaagc aataaaagga gttgaagaaa tgaaattcag 4141 agaagccttt gagaatttta taacaagtaa gtatgtactt ggtgttttag tagttttaac 4201 tgtttaccag ataatacaaa tgcttaaata aaaaaagact tgatctgatt agaccaagtc 4261 ttttgatagt gttatattaa taacaaaata aaaaggagtc gctcacgccc tgatcaaagt 4321 ttgtgaacga catcattcaa agaaaaaaaa cactgagttg tttttataat cttgtatatt 4381 tagatattaa acgatattta aatatacatc aagatatata tttgggtgag cgattcctta //