LOCUS NC_006357 8092 bp DNA circular VRL 12-JAN-2005 DEFINITION Human papillomavirus type 62, complete genome. ACCESSION NC_006357 VERSION NC_006357.1 GI:53851018 KEYWORDS . SOURCE Human papillomavirus - cand62 ORGANISM Human papillomavirus - cand62 Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; Alphapapillomavirus. REFERENCE 1 (bases 1 to 8092) AUTHORS Fu,L., Terai,M., Matsukura,T., Herrero,R. and Burk,R.D. TITLE Codetection of a Mixed Population of candHPV62 Containing Wild-Type and Disrupted E1 Open-Reading Frame in a 45-Year-Old Woman with Normal Cytology JOURNAL J. Infect. Dis. 190 (7), 1303-1309 (2004) PUBMED 15346342 REFERENCE 2 (bases 1 to 8092) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-OCT-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 8092) AUTHORS Fu,L., Terai,M. and Burk,R.D. TITLE Direct Submission JOURNAL Submitted (19-SEP-2003) Microbiology & Immunology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY395706. FEATURES Location/Qualifiers source 1..8092 /mol_type="genomic DNA" /db_xref="taxon:334210" /country="Costa Rica" /isolate="Qv18091" /type="62" /organism="Human papillomavirus - cand62" gene 1..447 /locus_tag="HPV62gp1" /db_xref="GeneID:3105150" /gene="E6" CDS 1..447 /locus_tag="HPV62gp1" /protein_id="YP_115501.1" /gene="E6" /db_xref="GI:53851019" /db_xref="GeneID:3105150" /codon_start=1 /product="putative transforming protein E6" /translation="MTAGPARPTNLFLLCKEYDVDLDDLHLTCIFCKTDLSAGELLSF AIRELHVVRRKDWPFGVCAACLLREIKVRELRRWQHSCFGITVEEETGSPLAQIYIRC HACCMPLTCQEKEYQVERGVHFHKIAGVWTGRYRNCRGVCTARQQL" gene 423..713 /locus_tag="HPV62gp2" /db_xref="GeneID:3105147" /gene="E7" CDS 423..713 /locus_tag="HPV62gp2" /protein_id="YP_115502.1" /gene="E7" /db_xref="GI:53851020" /db_xref="GeneID:3105147" /codon_start=1 /product="putative transforming protein E7" /translation="MHGQAATIKDIVLQERPDVVDLHCHEQLLDSSEEEVDDRDSAEQ PVERAQQAHRVVTTCGICNCLVRLVVLSGDAELRRLQQLLTDALEIVCPGCA" gene 719..2677 /locus_tag="HPV62gp3" /db_xref="GeneID:3105146" /gene="E1" CDS 719..2677 /locus_tag="HPV62gp3" /protein_id="YP_115503.1" /gene="E1" /db_xref="GI:53851021" /db_xref="GeneID:3105146" /codon_start=1 /product="putative replication protein E1" /translation="MADAEGTNGGDGIDGTNGAGGWFMVEVIVEQTTGYQVSSDEDEN SIDTGEDLVDFIDNTRHPGDGQEVPLELFVQQNARDDAAAVQALKRKYTYSPATSSCV SWVDCELSPRLNAISLDRGHERARRRLFDQDSGYGHTQVDTGPSEGQVPGDTQQTDEN VEQEVQEDVRGGGDGEPERSVDVQQSQERTASIVELLKTSNLRATLLSKFKELYGLAF GELVRQFKSDKSVCGDWVVCAFGVYHAVAEAIKTLIQPVCLYAHIQSQTCSWGMVILM LIRFKCSKSRETVAKCIGTLLNVPDKQMLIEPPKIRSAPCALYWFRTAMGNASEILGE TPEWITRQTVVGHAMQETQFSLSVLVQWAYDNDIVDESDLAYQYALLGNDDPNAAAFL ASNCQAKYIKDAITMCKYYKRAEQKRMSMAQWIAHRSQKVADTGDWRPIVRFLRYQKI EFVTFMSALKMFLRNIPKKSCIVIYGPSDTGKSLFCMSLLKFLGGAVISYVNSTSHFW LSPLTDAKVGLLDDATYPCWVYIDTHLRSVLDGNQISIDRKHKNLTQIQCPPLFITTN INPLEDANLKYLHSRIAVFHFMYKCPLDDKGDPVYQFNNENWKSFFQRSWAQIEGTPE EEEEEEEEDNGNTGRPFRCVPGETNRLL" gene 2619..3758 /locus_tag="HPV62gp4" /db_xref="GeneID:3105145" /gene="E2" CDS 2619..3758 /locus_tag="HPV62gp4" /protein_id="YP_115504.1" /gene="E2" /db_xref="GI:53851022" /db_xref="GeneID:3105145" /codon_start=1 /product="putative regulatory protein E2" /translation="MATLADRLDACQEKLIDFYEKDSDKLDDQVKHWQCIRLEHAILF KARQAGLTQLGHQVVPALSVTKGKAHLAIEVHLALKSLYASVYKDEPWTLQSTSLDMW NAKPQKCWKKKGRTVTVKFDCEDSKIMEYVSWGYIYVQTDTEQWCKVQGKVSYEGLYY ELEGHRHYYVVFADEAKKYGDLDKWEVHWGNTVIYEPCNSVSSTQDIVREIPPAETTR LLHTPEPTTSAQHVGTTQTTKATPVPTPPCKRQRVHGHGAERQPTVTEADSRVVDNNE YGTNSYPDSTKGRHVCDGGAAPVIHLRGEPNKLKCLRYRLRGSVPHLFVKASSTWHWT CGDSTEKDAFVTFWYANIEQRTEFLQRVTIPKGIQAMQGYMTMCM" gene 3202..3516 /locus_tag="HPV62gp5" /db_xref="GeneID:3105144" /gene="E4" CDS 3202..3516 /locus_tag="HPV62gp5" /protein_id="YP_115505.1" /gene="E4" /db_xref="GI:53851023" /db_xref="GeneID:3105144" /codon_start=1 /product="putative E4 protein" /translation="MNHATLYLAPRTLCERYPLLKLLDCYTPPNPPPVPSTWAPPRPP KPPRCRRRLVSDSESTDTERSGSPPLQKRTAGSWTITSTGPTVTLTAQKDDTCVTVAL HL" gene 4372..5799 /locus_tag="HPV62gp6" /db_xref="GeneID:3105148" /gene="L2" CDS 4372..5799 /locus_tag="HPV62gp6" /protein_id="YP_115506.1" /gene="L2" /db_xref="GI:53851024" /db_xref="GeneID:3105148" /codon_start=1 /product="putative minor capsid protein L2" /translation="MPKVLHRRKRASATDLYRTCKVSGTCPSDVIPKVEGNTLADKIL KWASLGVFFGGLGIGTASGTGGRTGYIPIGGRPPSVVDIGPVSRPPVVIEPVGATDPS IVTLVEDSSIIEAGAVHPNFTGSSGFEVTTSSTATPAVLDISPTGTTVQVSSTNFLNP AYTEPSIIDPPQTGELSGHVLTSTPTAGSHSYEEIPMVTFASNAGTGSEPISSTPLPG VRRVAGPRLGLYTKATQQVPVADPAFVSRPASFATFDNPIYDPEETIIFEHPSIYTPP DPDFLDIVTLHRPALTSRQGTVRLSRVGQRASLRTRSGKRIGARVHFYHDISPIPSTT TGDIELQPLLPSGSSSADTLYDVYADDQHLDAVLQSVPSMSSRPLVPSNATISATSVA SSHTNVTVPLSTGLSVPASTGPDVELPQFSVPVSVLTPSFPATTPYSIYIVGSDYYLF PSYIFFPKKHKRLHYFFTDGYVAAW" gene 5777..7288 /locus_tag="HPV62gp7" /db_xref="GeneID:3105149" /gene="L1" CDS 5777..7288 /locus_tag="HPV62gp7" /protein_id="YP_115507.1" /gene="L1" /db_xref="GI:53851025" /db_xref="GeneID:3105149" /codon_start=1 /product="putative major capsid protein L1" /translation="MAMWRPGDGKVYLPPTPVSKVLSTDTYVTRTNLFYYGGSSRLLT VGHPYCTLQVGQGKRATIPKVSGYQYRVFRVKLPDPNKFTLPDATLYNPDTERMVWAC RGIEVGRGQPLGVGTSGHPLYNRLDDTENTSLLAAANDDSRDNISVDYKQTQLLIVGC KPPIGEHWTKGTLCPNAAPAPTECPPLEFKNTTIQDGDMVETGYGAIDFKSLQESKSE VPLDICTSTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEALPTDLYM KGTPGSDRQMPGSYIYAPTPSGSMVSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTV VDTTRSTNFTICTASTAAAEYKATNFREFLRHTEEFDLQFIFQLCKIQLTPEIMAYLH NMNKDLLDDWNFGVLPPPSTSLDETYHYLQSRAITCQKGAASPSPKVDPYAQMTFWTV DLKDKLSTDLDQFPLGRKFLLQAGSRPRSVAVSRKRSAPTKQSPTSAKRKRRK" ORIGIN 1 atgactgcag ggccagcaag gcccacgaac ctgtttttgc tgtgtaagga gtatgatgtg 61 gacctggacg acctgcacct aacctgcata ttttgcaaaa cagacctgtc cgccggtgaa 121 ctgctgtcct ttgcaatacg ggagctacac gtggtgcggc gaaaggactg gccatttgga 181 gtatgcgcag catgcctatt gagagagatt aaagtaagag agctacggcg gtggcagcac 241 tcatgctttg gaataacagt agaagaggaa acaggcagtc cgcttgcaca aatatatatt 301 agatgccatg catgctgtat gccattaacc tgtcaggaaa aggagtatca ggtagagagg 361 ggagtgcact tccacaaaat agcaggagtg tggacaggac ggtaccgcaa ttgtagagga 421 gtatgcacgg ccaggcagca actataaagg acattgtcct acaagagcgt cccgatgtgg 481 ttgacctaca ttgccacgag caattgttag acagctcaga ggaagaggtg gatgataggg 541 acagtgctga gcaacctgta gaacgggcac agcaggccca tagggtggtt actacgtgtg 601 gtatttgcaa ctgtttagtt aggttggtgg tgttaagtgg agacgcagaa ctcagacggc 661 tgcaacaact actgacggat gcactggaga tagtgtgtcc cggctgcgca taagtgacat 721 ggccgatgcg gaaggtacca atggcgggga tgggatagat ggtacaaacg gggccggagg 781 gtggtttatg gtggaagtca tagtagaaca aacaacaggg taccaggtgt ccagtgatga 841 agatgaaaac agtatagaca caggggaaga tctggtagac tttatagaca ataccagaca 901 tcccggggac gggcaggaag tgccgttaga attgtttgtt caacaaaatg cacgggatga 961 cgctgcagct gtgcaggcac taaaacgaaa gtatacatat agtcctgcaa caagctcatg 1021 tgtatcctgg gtggactgtg aattgagccc gcggttgaac gcaataagcc tagaccgggg 1081 acacgaaagg gccagaagga ggttgtttga ccaagacagt gggtatggcc atacgcaggt 1141 ggatacggga ccatccgaag gacaggtacc gggggataca caacaaacag atgaaaacgt 1201 agagcaggaa gtgcaagagg atgtaagggg ggggggggat ggggaaccgg aacgcagtgt 1261 agatgtgcaa caatcgcagg aacgcacagc aagtattgta gagctgttaa aaaccagtaa 1321 cctgcgagca acactgctaa gtaagtttaa ggagctgtat gggctggcat ttggagagct 1381 ggtaagacaa tttaaaagtg ataaatcagt gtgtggggac tgggttgtat gtgcctttgg 1441 tgtataccat gcagtggcag aggctattaa aacattaata cagcctgtgt gcctatatgc 1501 ccatatacaa agccaaacct gttcgtgggg tatggtaata ttaatgctta ttagatttaa 1561 atgtagtaaa agcagggaaa cagtggccaa atgcattggc acattgctaa atgtgcctga 1621 caagcaaatg ttaattgaac caccaaaaat tagaagcgcg ccctgcgcac tatattggtt 1681 taggacggcc atggggaatg caagtgaaat attaggggaa acacctgagt ggataacaag 1741 acaaacagtt gtgggacatg caatgcaaga aacacaattt agcctatcag tgcttgtaca 1801 gtgggcatat gataatgata tagtggacga aagtgaccta gcatatcaat acgcattgct 1861 gggcaatgac gaccccaatg cagcagcctt tttagcaagc aactgccaag caaagtatat 1921 aaaggatgca attacaatgt gtaaatatta taaacgggca gaacaaaaac gtatgtctat 1981 ggcacagtgg atagcacata gaagccaaaa ggtagctgat acaggggact ggagacctat 2041 agtacggttt ttaaggtatc aaaaaataga atttgtgaca tttatgagtg cactaaaaat 2101 gtttttaaga aatataccca aaaaaagctg tatagtaata tatgggccaa gtgatacagg 2161 gaaatcattg ttttgcatga gcctattaaa gtttttagga ggggcagtaa tatcctatgt 2221 gaattccacc agccactttt ggttatcccc cctaacagat gctaaagtgg ggctactgga 2281 cgatgccacg tacccatgct gggtatatat agatacacat ttacggagcg tgctggatgg 2341 aaaccaaata agcatagata gaaaacataa aaacctgaca cagatacaat gtcctccctt 2401 atttattacc accaatataa atcctttgga agacgcaaat ctaaaatacc tgcatagtag 2461 aattgcagta ttccacttta tgtacaagtg tccattggat gacaaggggg acccagtgta 2521 tcaatttaat aatgaaaact ggaaatcctt ttttcaaagg tcctgggcac aaatagaggg 2581 tactcctgag gaggaggagg aggaggagga ggaggacaat ggcaacactg gccgaccgtt 2641 tagatgcgtg ccaggagaaa ctaatagact tttatgaaaa ggatagcgac aagcttgatg 2701 accaagtaaa acactggcag tgcatacgcc tggaacatgc cattttattt aaggcaagac 2761 aagcaggact aacacagttg ggccaccagg tggtgccagc acttagtgtt acaaaaggaa 2821 aagcccacct ggcaatagaa gtgcatttag cattgaaaag tttatatgca agtgtgtata 2881 aagacgaacc atggacattg caaagcacgt ctttggacat gtggaacgca aagccacaaa 2941 aatgctggaa gaaaaaagga cgaacagtta cagttaaatt tgattgtgag gactctaaaa 3001 taatggagta tgtaagctgg gggtacatat atgtgcaaac agataccgag caatggtgta 3061 aagtacaagg aaaggtaagc tatgaagggc tatactacga actggagggc cacagacact 3121 actatgtagt atttgcagac gaggctaaaa aatatgggga ccttgacaaa tgggaggtcc 3181 attgggggaa cacagtgatt tatgaaccat gcaactctgt atctagcacc caggacattg 3241 tgcgagagat accccctgct gaaactacta gactgctaca cacccccgaa cccaccacca 3301 gtgcccagca cgtgggcacc acccagacca ccaaagccac cccggtgccg acgccgcctt 3361 gtaagcgaca gcgagtccac ggacacggag cggagcggca gcccaccgtt acagaagcgg 3421 acagcagggt cgtggacaat aacgagtacg ggaccaacag ttaccctgac agcacaaaag 3481 gacgacacgt gtgtgacggt ggcgctgcac ctgtaataca cctgcgaggt gaaccaaaca 3541 aattaaagtg tcttagatat agattacgcg ggtctgtacc acatttattt gtaaaggcgt 3601 cctccacgtg gcattggacc tgtggggaca gcacagaaaa ggatgcattt gtaacatttt 3661 ggtatgccaa tatagaacaa cgcacagaat tcctgcaacg tgtaacaata ccaaaaggca 3721 tacaagcaat gcaagggtat atgaccatgt gtatgtaacc atatatatat gtacatatat 3781 attactgtaa tcacatatag ctacgtgtgt aaacaatatt gtttgtgctg tatctgagcc 3841 aggtttatac agtaaggtac cacacctgca ttgtgcaaac gttaccaatc ctggataact 3901 tgctatgttg tatatgtggg tggtgtgatg tgcttttgct gcttatactt ttctggcttt 3961 cccagctgtc tgccctaact gcctttgctg tgtttttttg tattatatat gtgggatttg 4021 ggcttttgta tttgcaggtt atgtggtaca ttggtatgct gtaaaccaca accagccaac 4081 cactgctgct attgtgtata tacatagtag gtgtatttgc aggtgtttag taggtatgca 4141 tcctgttatg gtacgctcct atgacggggg caccgatatt gtggtgttgg ggtctgatga 4201 cagtggtcta ctgtttttat tgtgcctcat agtggcatta atactgtttg ctatatacaa 4261 gttgttgcaa ttgtaactac cagcgttgta cataccatat ttctgttatt gttgctttat 4321 tttttatatt ttgtatgttg caataaatac atttatacat tggctttcaa tatgcccaag 4381 gtactgcatc gtcgcaagcg tgcatctgcc actgaccttt atcgtacctg caaagtatca 4441 ggcacgtgtc cttctgatgt cattcccaag gtggaaggca atacattggc agataaaata 4501 ttaaagtggg ccagccttgg ggtatttttt gggggtctag gtattggtac ggcctctggc 4561 acgggtgggc gcaccggcta catacctata gggggccggc ccccgtctgt ggtggacatt 4621 ggccccgtgt cccgcccccc tgtggttatt gaacctgtgg gcgctacgga tccatctatt 4681 gttacccttg ttgaggattc cagtattatt gaggccgggg ctgtgcatcc caattttaca 4741 gggtcctcag ggtttgaggt caccacatcc tctaccgcca cccctgctgt tttggacatt 4801 tcccctaccg gtaccactgt acaggttagc agtaccaact ttttaaatcc tgcatatact 4861 gagccatcca ttatagaccc tccccaaact ggtgagcttt cgggtcatgt gcttaccagt 4921 acacccacag ctgggtcaca cagttatgag gaaatcccta tggttacctt tgcatcaaat 4981 gctggtacag gctctgaacc tattagtagc accccattgc ctggtgtgcg gcgcgttgca 5041 gggccccgcc ttggtttata cacaaaggcc actcagcagg tgcctgtggc tgaccctgcc 5101 tttgtgtctc gtcctgcatc ctttgcaaca ttcgacaatc ctatatatga ccccgaggaa 5161 actattattt ttgagcaccc cagtatttac acaccgcctg atcctgactt tttagatatt 5221 gtgactttac acaggcctgc tttaacctct cgccagggca ctgtacgcct tagtcgtgtt 5281 ggccagcgtg cgtcattacg cacccgtagt ggtaagcgta ttggggccag ggtacacttt 5341 taccatgaca tcagccctat acccagtacc accactggtg acattgagtt gcagcccttg 5401 ctgccttctg gctcctcctc tgctgataca ttgtatgatg tatatgcaga tgaccagcac 5461 cttgatgctg tattacagtc tgtgccttct atgtcttcca ggcccttggt tcccagcaat 5521 gccaccatat ctgccacgtc tgtggcatcc tctcatacta atgtcactgt accattatcc 5581 actgggttgt ccgttccagc gtccactggc cctgatgtgg aattgcctca gttttctgta 5641 cctgtgtctg tgctaacgcc ttccttccct gcaactaccc catattctat atatattgta 5701 ggttctgatt attatttgtt cccttcctat atttttttcc caaaaaaaca taaacgtctt 5761 cactattttt ttacagatgg ctatgtggcg gcctggtgac ggcaaggtat acctgcctcc 5821 cactcctgtt tctaaggttc tcagtacgga cacctatgtt acacgcacca acctttttta 5881 ttatgggggc agctcccgcc ttcttactgt gggacatcca tattgtactt tacaggttgg 5941 ccagggtaaa cgggccacca ttcctaaggt gtctgggtat cagtacaggg tgtttcgtgt 6001 gaaattacca gaccctaata aatttacttt acctgatgca accttatata atccagacac 6061 ggaacgcatg gtatgggcct gcaggggcat tgaggtcggc cgtgggcagc cactgggtgt 6121 tggcaccagt ggccacccgt tatataacag gttggatgat acagaaaata cctctttgtt 6181 ggctgctgct aatgatgaca gtcgggacaa tatctctgtg gattataagc agacccagtt 6241 gttaattgtg gggtgtaagc cccctatagg agagcactgg accaaaggta ccttatgccc 6301 caatgctgcc ccggccccca cggaatgccc tccgttggaa tttaaaaata caactattca 6361 ggatggtgac atggtagaaa cgggctatgg ggctattgat ttcaaaagct tgcaggaaag 6421 taaatctgag gtgcccttgg atatatgcac ctccacatgt aaatatcctg actatttgca 6481 aatggctgca gaaccttatg gcgattgtat gtttttttgt ttgcgccgtg agcaaatgtt 6541 tgccagacat ttctttaaca gacatggcac tatgggcgag gccctgccca ctgacctgta 6601 tatgaaaggt accccaggca gtgacagaca aatgccgggc agttacattt atgcccccac 6661 tcctagtggg tctatggtgt cgtctgattc tcagttgttt aataagccat attggctgca 6721 gcgggcgcag ggccataata atggtatttg ttggtttaat gaactgtttg ttactgtggt 6781 ggatactact aggagtacta attttactat ttgtaccgcc tccactgctg cagcagaata 6841 caaggctacc aactttaggg aatttttgcg acacacggag gaatttgatt tgcaatttat 6901 atttcaattg tgcaaaatac agttaacccc cgaaatcatg gcctacctgc ataatatgaa 6961 caaggacctt ttggatgact ggaactttgg ggttttacct cccccttcca ctagtttaga 7021 tgagacatat cactatttgc agtctcgggc tattacatgt caaaaggggg ctgcttcccc 7081 gtcccccaag gtggacccgt atgcgcaaat gacattttgg actgtggatc ttaaggacaa 7141 gttgtctact gatttggacc agtttccttt ggggcgtaag ttcttgctac aagcagggtc 7201 tcgccctcgg tctgttgctg tgtcccgtaa gcgttctgca cctactaagc agtcccctac 7261 ctctgctaaa cgaaagcgca ggaagtaact gtatgtatgg tatgtgtgtg tgtgctctgt 7321 actgtgttgt gcgcgtttgt cagtgtgttt tgttatatgt atgtatggcc tgtttgtata 7381 tgttgtgtat gtacccccct cctcccgctg ttgtatatgt atttatggaa tgtatgtgtt 7441 gtttgtgcat tattaaactg tgtgtcactg tgcctaatgt ccggtgcgcc ctgtgagtaa 7501 gtgtgtgtgt gtgtatttgt ttgtacgcct tgcacactat gttatttcct taccactcct 7561 tacattagtg cctccatttt gtgtgctaca ttttgtatga ccccattgtg ttaccccgac 7621 cgttttcggt tgcgcgcctt tttggtttct atagtggcac actgccacac tgtacacaaa 7681 aggtttctaa tccttaggca actcatttcc tgcgttggca gcatactgtg ttttacacct 7741 gggcgtgcct gacatattct tggcggccta caactgtttt gcacacaaat tatacagtgc 7801 acttactcat tttgcaataa aactgctttt aggcacattc tttgtgctga ctaccatgtc 7861 ctaattgctg gtttggcttt tataaacttt ctacaagcca actatgtgtc ctataaacta 7921 agcatgcttt gtgcaaacct gttttaacat acaaggtggg gcaatgtgta agtctacttt 7981 tcccttataa taatttacaa caatcatctg tataataaag tagggaggta ccgaaaacgg 8041 tcgaccggga agggtacata taaaagcaaa ccgtgtggtc agcacagtag ca //