LOCUS NC_006298 5178 bp DNA circular BCT 27-JUN-2007 DEFINITION Haemophilus somnus 129PT plasmid pHS129, complete sequence. ACCESSION NC_006298 VERSION NC_006298.1 GI:52421262 DBLINK Project:322 KEYWORDS . SOURCE Haemophilus somnus 129PT ORGANISM Haemophilus somnus 129PT Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Histophilus. REFERENCE 1 (bases 1 to 5178) AUTHORS Challacombe,J.F., Duncan,A.J., Brettin,T.S., Bruce,D., Chertkov,O., Detter,J.C., Han,C.S., Misra,M., Richardson,P., Tapia,R., Thayer,N., Xie,G. and Inzana,T.J. TITLE Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd JOURNAL J. Bacteriol. 189 (5), 1890-1898 (2007) PUBMED 17172329 REFERENCE 2 (bases 1 to 5178) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-SEP-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5178) CONSRTM Joint Genome Institute Microbial Sequencing, Finishing and Annotation Team TITLE Direct Submission JOURNAL Submitted (02-SEP-2004) Joint Genome Institute, Department of Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000019. Haemophilus somnus strain 129Pt was isolated from the prepuce of a healthy bull at the Washington State Animal Disease Diagnostic Laboratory. This strain lacks several known virulence attributes and is relatively avirulent in challenge models. In general H. somnus is the cause of a variety of systemic diseases in cattle, including thrombotic-meningoencephalitis, pneumonia, abortion and other reproductive diseases, arthritis, myocarditis, and septicemia. Plasmid and fosmid libraries of H.somnus (strain 129Pt) were prepared and shotgun sequencing was performed at the JGI Production Genomics Facility (JGI-PGF) in WalnutCreek, CA. to a coverage of 6x. Draft reads produced one contig with reads from only plasmid libraries and one gap closed by PCR. Gene predictions were performed using Glimmer and basic analysis was performed by searching the coding sequences against the Pfam, BLOCKS, COGS and PDB databases. Six genes have been annotated and two plasmid replication proteins identified. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5178 /organism="Haemophilus somnus 129PT" /mol_type="genomic DNA" /strain="129PT" /db_xref="taxon:205914" /plasmid="pHS129" gene complement(join(5079..5178,1..107)) /locus_tag="HS_p06" /db_xref="GeneID:3021849" CDS complement(join(5079..5178,1..107)) /locus_tag="HS_p06" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_874357.1" /db_xref="GI:118216075" /db_xref="GeneID:3021849" /translation="MEKLAMRTQTKSQQSQAVFQEKILSLFEKSLTEEQRFLQDVMAG KIKLIPHEEVMEKLEFVLKNGLQR" gene complement(341..547) /locus_tag="HS_p01" /db_xref="GeneID:3021847" CDS complement(341..547) /locus_tag="HS_p01" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_087174.1" /db_xref="GI:52421263" /db_xref="GeneID:3021847" /translation="MNVVIKNRIKSMISAHASNKIENVDMGDEEFASMLERAKSPISD EEFAFQEISRVYSECGLSYVKSAV" gene complement(558..1529) /gene="rep" /locus_tag="HS_p02" /db_xref="GeneID:3021852" CDS complement(558..1529) /gene="rep" /locus_tag="HS_p02" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_087175.1" /db_xref="GI:52421264" /db_xref="GeneID:3021852" /translation="MNDLIIRKSHPIVEAGYKLTIAEQRIILLSLAKLDNRNIENSNV TLYVKDYAEAFNLSETSAYSELERASKRLYDRSIILKGEDETTEFRWIESRTKYHKGE GRISFQFSRRVMPYLFELDKRLGFTQYELLSVSGFKSAYSIRMYELAIKLLGMRNQQV EIDELRRILQLDDKYQEFKRLKRDVINLACNEINEKSDLLLNIEPVKRGRKIIALEFQ IAKKAKSKKAEPTPEGTRKIHGVFAEIPRPQVVKGSQAETDWVNENYTRAVKQMREKG ILKSRFIEDELSTLPTEWLKVIKKYTSIINRSLSREISAELHTRKNL" gene 3309..4280 /gene="rep" /locus_tag="HS_p03" /db_xref="GeneID:3021850" CDS 3309..4280 /gene="rep" /locus_tag="HS_p03" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="YP_087176.1" /db_xref="GI:52421265" /db_xref="GeneID:3021850" /translation="MNKLTIYKSNDLVEAGYRLSLAEQRMIVLSLGQIDSRDPKQKHV TLYAKDYAKQWGVNEDNAMREIKQASKRLFERYITLKNDDETRKFRWIQESVEHHKGE GRVSFTFSERILPFLFELDFKLGVTKYELLSVSGFSSVYSFRLYELAIKLLGMRNQVI DLDEIRRILQLENKYPEYKEFNKFVLKPSLSDINEKSDLLLNIEPVKRGRKIVALEFQ IAKKAKSKKAEPTPEGTRKIHGVFAEIPRPQVVKGSQAETDWVNENYTRAVKQMREKG ILKSRFIEDELSTLPTEWLKVIKKYTSIINRSLSREISAELHTRKNL" gene 4327..4563 /locus_tag="HS_p04" /db_xref="GeneID:3021848" CDS 4327..4563 /locus_tag="HS_p04" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_087177.1" /db_xref="GI:52421266" /db_xref="GeneID:3021848" /translation="MSWLRLKRGNLDFMNDEKLTPEVLDRRAYHVRNALASFALEGEY PSNEAEDLFNKFASGEIETMDELRVQINLLYSED" gene complement(4798..5079) /locus_tag="HS_p05" /db_xref="GeneID:3021851" CDS complement(4798..5079) /locus_tag="HS_p05" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_087178.1" /db_xref="GI:52421267" /db_xref="GeneID:3021851" /translation="MKFDYLIFWSEKAEAKLLDKADYIFHDSKNEMIAEKFLNTMRSF AEKLRYVAAAYADGDFHIYPLKYGHSVKFIVIEDIVIIADFLPKGSNLH" ORIGIN 1 cgttgttctt ccgttaaaga tttctcaaac aaggataaaa tcttttcttg aaaaacggct 61 tgtgattgct gtgatttagt ttgtgtacgc attgctaatt tctccaagtt tattgacctt 121 ttcgttttaa aatcgcttac tcaatttttc aattgtatct ctgttagcaa aaaatattat 181 accgtgatta aatgggtttt aatattgttc tcgatttttc gggtaagtta ttgacatcct 241 ccccctgcct ttaggcgggg ggaggatgtc aataactaat acaggtattt caccattctt 301 atgaggatag acatgagaca gataagaggc ttcctcctca tcataccgcc gacttgacat 361 aacttaatcc acactcacta taaactctac ttatttcttg aaaagcaaac tcctcatcac 421 taattggaga ttttgctctt tccaacatag aagcaaattc ctcatccccc atatctacat 481 tttctatttt attgcttgca tgtgcagaaa tcatagattt aattctgttc ttgataacaa 541 cgttcatttg actttcctta taaatttttc ctggtatgta attcagctga aatttcccgt 601 gatagcgatc gattgatgat acttgtatat tttttaatga ccttaagcca ttctgttggc 661 agtgtagaaa gttcatcctc aataaatcga gattttaaaa tccctttttc ccgcatttgc 721 ttaactgccc gtgtataatt ttcgtttacc caatctgttt ccgcttgaga acctttaaca 781 acctgtgggc gtggtatttc agcaaataca ccgtgaattt tacgagtacc ttcgggcgtt 841 ggttcggctt tttttgactt cgcttttttg gctatttgaa attctaacgc tataattttt 901 cgaccacgtt taacaggctc gatatttagc agtaaatcag atttttcgtt aatttcatta 961 cacgccaaat tgattacatc acgctttaaa cgcttaaatt cttgatactt atcatcaagt 1021 tgtaaaattc gtctaagttc atcaatttca acttgctgat ttcgcatacc taacagcttg 1081 atcgctaatt cgtacatacg aatagaatac gcacttttaa aaccactaac gcttaaaagc 1141 tcgtattgcg taaaacctaa tcgcttatct aattcaaata aatacggcat aactctgcga 1201 ctaaattgga aagaaattcg cccttcccct ttatggtatt ttgtgcgact ttcgatccat 1261 cgaaattccg ttgtttcatc ttcgcctttt aaaataatcg aacgatcata caagcgtttt 1321 gacgctcgtt ctaattcaga ataagccgat gtttcactta aattaaacgc ttccgcataa 1381 tctttaacat atagcgttac gtttgaattt tcgatatttc tattatccaa tttggcaagg 1441 cttaatagga taatccgctg ttctgcaatc gttaatttat aacctgcttc cacaattggg 1501 tgcgattttc taataattaa atcgttcata aatcaacctt acagtgatag gatttagtgt 1561 attggtgcta taatatcata aaacagcacc aatacaccaa aaaatagcac ctttaacacc 1621 aaaaaatagc acctttaaca ccaaaaaata gcacctttaa caccaaaaaa tagcaccttt 1681 aaatctcgca agccttatat atcaaggctt gccgaagtca gaaagaaaga aagaaagaaa 1741 gaaagaaaga aataaggctg tcgccttatt ttttcttttt ttttgcagaa aagtgccaaa 1801 cttggcacca aagttcgggg attagttaaa tacgacctaa aggacgtggt tttacggcac 1861 gattagataa acctattctt cgattttaaa gcatctattt gagctgtaga gatttttttt 1921 aagggtaagg tatactaccc taccacttta ttaaattaat gctttaatgc tcgatttaga 1981 gctaaatttt aaatagtact aaaaatcaac agacgaataa tacaaaaaaa tactatttca 2041 gaaataaaaa aacttaacta gaacattttt tgactttttt acttctggag ttatacatta 2101 aaatgtgggc aggaaagatt cgatttttga tactttgcca aaaaatttat cagacagtgc 2161 cgtaaaacca cgtcctttag agcgtggata taaggcacaa atatgatata cttcttgctg 2221 ctaacagagg tcgctttaga ctctcaatga cggcataatc agggcaggac gtgcccgtag 2281 cgtctgtgaa gtgaatcgca ttggcggtca gcagcagaaa cccaccgaga gtagcccatt 2341 gcttgcaatg ggagctggta ggaatctcct tgctttagct aggggaggac gtcaacaagg 2401 tgaaaaaata caatgtcgaa aatgagaaaa tccacgttaa aacgtggatt ttctcttaaa 2461 tagaccccga atacacttac caaggcatcg caccttactc atttctaagc cgtcctatga 2521 tcgatttcat cgggttgcca taggttgtat tagtattatg gagtcttttc ttaatatgtc 2581 aagtttacta ttgatgcctg ttcatcactt ttggtgtaaa aactctgaag gacaagatat 2641 aggatttgag cctatggcga atacatccga gtaaagtgga tttattttat ttcataaaat 2701 aaggccaact ttacatatct tgcccactct tttaagtaaa cttttaatat acacaacgta 2761 gtatctaggt ataaaaaagg ttttatttag tattattagg ttttatttag tattattagg 2821 ttttatttgg tattaccaaa gtttaaaaaa gttttttcta gtgtaaaaaa gataaaaaaa 2881 tagggctgaa agccccaaaa gagccgatag gctctatatt tttgtttttt agtttttttc 2941 ggtttctttt tttatataac aataagttaa aaacttatac gactagaaat ttcctgttat 3001 cgacttgatg tttaaattta tttaactagg tgttttctgc aaaaaaaaga aaaaataagg 3061 cgacagcctt atttctttct ttctttcttt ctttctttct ttctgacttc ggcaagcctt 3121 gatatataag gcttgcgaga tttaaaggtg gtgtaattta cggttaaagg tggtgtaatt 3181 tacggttaaa ggtggtgtaa tttacggtta aaggtggtgt aatttacggt taaaggtggt 3241 gtaatttgac attaccactt aaatgagtgt aacatctacc gtaaatctca ccgcttaaag 3301 aatgttttat gaacaaatta accatttata aatcgaatga ccttgtagaa gctggctatc 3361 gccttagcct tgctgaacaa cgaatgattg tgcttagttt ggggcaaatt gatagccgtg 3421 atcctaaaca gaaacacgtt accctttatg caaaagatta tgcaaagcaa tggggggtaa 3481 atgaagataa cgcaatgcgt gaaataaaac aggcaagcaa aaggcttttt gagcgttaca 3541 tcacattaaa aaatgatgat gaaacgagaa aattcaggtg gatacaggaa agcgtagaac 3601 accataaagg tgaagggcgt gtatcattca cttttagtga aaggatcttg ccatttttat 3661 ttgagcttga ctttaaatta ggcgtaacaa aatatgaatt attgagtgtt tcaggtttct 3721 ctagtgtgta ttcttttagg ctttatgagc ttgcaataaa attattggga atgagaaatc 3781 aggttattga tttagacgaa attagacgta ttttgcaatt agaaaataaa taccctgaat 3841 ataaagaatt taacaagttt gttctgaagc cgtccttatc cgacatcaac gaaaaatcgg 3901 atcttttgct aaatatcgag cctgttaaac gtggtcgaaa aattgtagcg ttagaatttc 3961 aaatagccaa aaaagcgaag tcaaaaaaag ccgaaccaac gcccgaaggt actcgtaaaa 4021 ttcacggtgt atttgctgaa ataccacgcc cacaggttgt taaaggttct caagcggaaa 4081 cagattgggt aaacgaaaat tatacacggg cagttaagca aatgcgggaa aaagggattt 4141 taaaatctcg atttattgag gatgaacttt ctacactgcc aacagaatgg cttaaggtca 4201 ttaaaaaata tacaagtatc atcaatcgat cgctatcacg ggaaatttca gctgaattac 4261 ataccaggaa aaatttataa cttacccgaa aaatcgagaa caatattaaa acccatattg 4321 tagattgtga gttggttaag attgaagaga gggaatttag attttatgaa tgatgaaaaa 4381 ttaacgccag aagttttgga tcgacgggca taccatgtaa gaaatgccct ggctagtttt 4441 gctttggaag gggaatatcc ctctaatgag gcggaggatc tatttaataa atttgcttct 4501 ggtgaaattg aaaccatgga tgaactgcga gttcaaatta atttattgta ttctgaagat 4561 taggaaggta aaaatggcaa ctgtagttca aaaagatgtt ttaattgagg cgattgccca 4621 ggttcaaggt tatttattac gtagcttacc ctcctctgac tctatgaatg atgatgaact 4681 atttttgtgt gagctacgtg agaaaattta tagcactcat cgaataataa ggcaccatca 4741 catctagatt gtagcattgc gaaatgagaa agggagttaa aactaaaact acaaccacta 4801 atgtagattt gaaccttttg gtaagaaatc agcaatgatg acaatatctt caatcacgat 4861 gaactttact gaatgaccgt attttagcgg atagatatga aaatcaccgt cagcgtaagc 4921 tgctgcaaca taacgcaatt tttccgcaaa cgaacgcata gtatttaaaa atttttctgc 4981 aatcatttcg tttttactgt cgtgaaaaat gtaatctgct ttgtctaata atttggcttc 5041 agccttttca gaccaaaaaa taagataatc aaatttcatt agcgttgcag tccgtttttt 5101 aatacaaact caagtttttc cattacttcc tcgtgaggaa ttagcttgat ttttcctgcc 5161 atcacatctt gtaaaaaa //