LOCUS NC_005003 6585 bp DNA circular BCT 30-MAR-2006 DEFINITION Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06, complete sequence. ACCESSION NC_005003 VERSION NC_005003.1 GI:32470520 DBLINK Project:279 KEYWORDS . SOURCE Staphylococcus epidermidis ATCC 12228 ORGANISM Staphylococcus epidermidis ATCC 12228 Bacteria; Firmicutes; Bacillales; Staphylococcus. REFERENCE 1 (bases 1 to 6585) AUTHORS Zhang,Y.Q., Ren,S.X., Li,H.L., Wang,Y.X., Fu,G., Yang,J., Qin,Z.Q., Miao,Y.G., Wang,W.Y., Chen,R.S., Shen,Y., Chen,Z., Yuan,Z.H., Zhao,G.P., Qu,D., Danchin,A. and Wen,Y.M. TITLE Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228) JOURNAL Mol. Microbiol. 49 (6), 1577-1593 (2003) PUBMED 12950922 REFERENCE 2 (bases 1 to 6585) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6585) AUTHORS Zhang,Y., Ren,S., Li,H., Fu,G., Lu,L., Lu,G., Jia,J., Tu,Y., Qin,Z., Chen,Z. and Wen,Y. TITLE Direct Submission JOURNAL Submitted (05-NOV-2002) Chinese National Human Genome Center at Shanghai, 250 Bi Bo Road, Shanghai 201203, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AE015935. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6585 /organism="Staphylococcus epidermidis ATCC 12228" /mol_type="genomic DNA" /strain="ATCC 12228" /db_xref="ATCC:12228" /db_xref="taxon:176280" /plasmid="pSE-12228-06" gene 51..245 /locus_tag="SE_p601" /old_locus_tag="p601" /db_xref="GeneID:1463470" CDS 51..245 /locus_tag="SE_p601" /old_locus_tag="p601" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_863193.1" /db_xref="GI:32470521" /db_xref="GeneID:1463470" /translation="MKKISKLLIAFSLVTTLSYASASTGFMNDNSHEAFAKSKKKKHK GNGNKHNCFPVGNSEFCTTP" gene 341..1141 /locus_tag="SE_p602" /old_locus_tag="p602" /db_xref="GeneID:1463468" CDS 341..1141 /locus_tag="SE_p602" /old_locus_tag="p602" /codon_start=1 /transl_table=11 /product="teichoic acid translocation permease protein" /protein_id="NP_863194.1" /db_xref="GI:32470522" /db_xref="GeneID:1463468" /translation="MKSSLFILKEHFNNLYLMKRLAQFEMKISNKNNYLGTAWELINP SIQIFMYWFIFGLGFRNNRTVENIPFIFWLIVGISMWFFVNQGILNGTKAVTSKYKQV AKMNFPLSILSSYIVLSKFYTHVLLLILIMLICALNGYYPTIYTLQLLIFIPYTLLLT MTITLLTSTLAVIIRDIQMLMQALMRIIFFISSILYLPTNALVLKVIQFNPIYFIAES YRAAILYQNWFFITHWKLSLYNLAFLLITFVLGSILHVKYREQFADFL" gene 1477..1863 /locus_tag="SE_p603" /old_locus_tag="p603" /db_xref="GeneID:1463469" CDS 1477..1863 /locus_tag="SE_p603" /old_locus_tag="p603" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_863195.1" /db_xref="GI:32470523" /db_xref="GeneID:1463469" /translation="MSEQNTFVASDETVGRNRKPNRKAPKQISFRVSESEYLKLQQSA ETLNMSVPAFVKKKAQGARLVAPKLDQATRQSVAKDLSMLGANANQIAKYCNQHQHEA PNYEALERNISELRERLDEIWNMIQK" gene 1842..2042 /locus_tag="SE_p604" /old_locus_tag="p604" /db_xref="GeneID:1463466" CDS 1842..2042 /locus_tag="SE_p604" /old_locus_tag="p604" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_863196.1" /db_xref="GI:32470524" /db_xref="GeneID:1463466" /translation="MEHDPKIKMIVSAILFVMCLMILFYFIFFDPQFPVILCFSLLTF ITGIDLYISYKKKKARDTNGNN" gene 2029..3039 /locus_tag="SE_p605" /old_locus_tag="p605" /db_xref="GeneID:1463467" CDS 2029..3039 /locus_tag="SE_p605" /old_locus_tag="p605" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_863197.1" /db_xref="GI:32470525" /db_xref="GeneID:1463467" /translation="MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAAR ELYGKTDGNQGHVIIQSFQPGEVTPEQCNQLGLALAEKLVPNHQVAVYTHADTNHVHN HIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGLSVPEKDTARLRYTQTEKAIA DPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSITYRHLAEN KKVRGRKLGEDYNKGGIQHGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTERDTGV TQSDWDQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKPTSRPIINIDRDHGL EL" gene 2738..3547 /locus_tag="SE_p606" /old_locus_tag="p606" /db_xref="GeneID:1463464" CDS 2738..3547 /locus_tag="SE_p606" /old_locus_tag="p606" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_863198.1" /db_xref="GI:32470526" /db_xref="GeneID:1463464" /translation="MALKDKYNDDNNKNINQTRTSSQNDQLQTVMNQLNEIQASLNQI GTNSPKTQMSLSVADKLQNQQDLLMKRLEEIEKREYERNQRHDQLLTSIETTASNFNQ ATDFTQKRFISAARHYIERINNDNLKQDFHTAIQKELEDVKTDTQNVVKEVQNNQSEL RQANNNYKKMIDERMKSNAIVIKQYDQVIHRLTKGITAMFFIVALVMVAFLVISPLGD WLGVQHFYEWLNHVLKTGHSAWRYFMLVFYLVPYILFGVLIYAILKAYERL" gene complement(3650..3850) /locus_tag="SE_p607" /old_locus_tag="p607" /db_xref="GeneID:1463465" CDS complement(3650..3850) /locus_tag="SE_p607" /old_locus_tag="p607" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_863199.1" /db_xref="GI:32470527" /db_xref="GeneID:1463465" /translation="MLNKFSRHKRMCYSSFSISFTTFNIGVISNDKINADSKIRKIFV PSKNIKLTTYPKRQNTIKKQIK" gene 4425..5249 /locus_tag="SE_p608" /old_locus_tag="p608" /db_xref="GeneID:1463463" CDS 4425..5249 /locus_tag="SE_p608" /old_locus_tag="p608" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="NP_863200.1" /db_xref="GI:32470528" /db_xref="GeneID:1463463" /translation="MNLVPLRKFNNTEVNLFFTLCNKLKDKGNLTVNVPFEELKELSN YYSHDKKLFIQDLEKFYDKVFSLTYREETENVIRKFILFTKVEIYKDKEYVAIGVNPD LEHIINSLTSNFTKFELKEMTHLKSTYSKHMFRILKQYKHTGYVKIKIDDFRERLDIP NSYRMTNINQKVLAPIIKELGFIFNNLNINKIKAKKGRKIEWLEFTFDAEKRIHNKRQ PQMANIDKSRQYISREKTPRWLEERTYEKQIKNEYDPQLEKERKAFLKQLQLDWED" gene complement(5297..5908) /locus_tag="SE_p609" /old_locus_tag="p609" /db_xref="GeneID:1463461" CDS complement(5297..5908) /locus_tag="SE_p609" /old_locus_tag="p609" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_863201.1" /db_xref="GI:32470529" /db_xref="GeneID:1463461" /translation="MSMNKSKVAEIRKQKSLTQENLAEKAYVTVRTIQRMEAGEEVSS ETLKSVSNALDVTVNELFESISSSDKEEEIMEISKEQQKQFNYRKNELFTIKLITFSF IFVFLGLFGIFVGELNGLEQNIYRIIWIFALFLSLAIMYYFLNVFISKKLDKKYPMTI GMKNRNRKNEPVKNGWDFMARYWWIVFPIGGFLSWLIPELTGK" gene 5965..6162 /locus_tag="SE_p610" /old_locus_tag="p610" /db_xref="GeneID:1463462" CDS 5965..6162 /locus_tag="SE_p610" /old_locus_tag="p610" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_863202.1" /db_xref="GI:32470530" /db_xref="GeneID:1463462" /translation="MKRQLLQNYILKRKYISNFTKSIRKDILKVTNSRYIIVCENPQR AGWGFLFTYALVVIDKEHNQQ" gene complement(5977..6150) /locus_tag="SE_p611" /old_locus_tag="p611" /db_xref="GeneID:1463460" CDS complement(5977..6150) /locus_tag="SE_p611" /old_locus_tag="p611" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_863203.1" /db_xref="GI:32470531" /db_xref="GeneID:1463460" /translation="MFFIYYNKSISKKKPPAGTLGVFTYNDISAICYFQYILSYAFCK IRYILSFKNIILK" ORIGIN 1 cttaaaattg tgatatcttt actttaaatt aatattttgg aggggtagaa atgaaaaaaa 61 tctcgaaact tcttattgca ttttcattag taacaacact atcatatgca agtgcttcaa 121 ctggttttat gaatgataac tctcatgaag catttgctaa atctaaaaag aaaaaacata 181 aaggaaatgg taacaaacat aattgcttcc cagtcggaaa cagtgaattt tgtacaactc 241 cataattaaa atagaaaagg taaagcaata aacaattgct ttaccttttt tttaggtttc 301 atttataata ttgataatct tagaaaggta acttaatgtt atgaaatcat ctttgtttat 361 attaaaagaa cattttaata atttatattt aatgaaaaga ttagcacaat ttgaaatgaa 421 aatttctaac aaaaataatt atttgggaac agcatgggaa ttaattaatc cttcaataca 481 gatttttatg tattggttta tttttggttt aggtttcaga aataatagaa ctgttgagaa 541 tatacctttt attttttggt taattgtagg aataagtatg tggttttttg tgaatcaagg 601 tattttaaat ggtacaaaag cagttactag caaatataag caagtagcta aaatgaattt 661 tccattatct atattatcta gttatatcgt cttaagtaaa ttttataccc atgtgttatt 721 gcttatttta attatgctta tatgtgcttt aaatggatat taccctacta tatatacatt 781 acaattatta atttttatcc cttacactct gttactgaca atgacaataa cactattaac 841 ttcaacatta gctgtaatta ttagagacat ccaaatgctt atgcaagctc ttatgagaat 901 aatatttttt atatcttcaa ttttatattt accgacaaat gctttagttt taaaggttat 961 acaatttaat cctatctatt ttatagctga aagttataga gcagcaattc tatatcaaaa 1021 ttggtttttt ataacacatt ggaaactatc tttatataat cttgctttcc ttttaattac 1081 ttttgtgttg ggctctattt tacatgttaa atatcgtgaa caatttgcag attttttata 1141 aacagaatat aaagaacatt atttttgatc ttattctcat ttctttttta attttatttt 1201 tcatttgggt ttaataatta tagcaaaaat atttttggtt gctgcggttt tgatggtttt 1261 gaatttagtg gctagcaatt agccactatt ttttcgttag aaaaaatcca taaggggctt 1321 ggggattacc cccaacaagc aggcgcgtct gccacgttag tggctagcaa agccaatgct 1381 tgccaaacca cttaacgact tgatgaatct tactttatca tataaagtaa gatgtaagaa 1441 cggcgttatc tttcgaagaa agcgtggtgg gattgaatga gcgaacaaaa cacatttgtg 1501 gctagcgacg aaactgttgg gcgaaaccgt aaacccaacc gtaaggcgcc gaaacaaatt 1561 agttttcgtg tgagcgaatc cgaatattta aagttacaac aatcagctga aactttaaat 1621 atgagtgttc ctgcgttcgt taagaaaaag gcacaaggcg cccgattggt cgcacccaaa 1681 ttggatcaag caacgcgaca atcggtagct aaagatttaa gtatgttggg tgcaaatgcc 1741 aatcagattg cgaaatattg caaccaacat caacacgaag caccgaacta cgaagcatta 1801 gaacgtaaca ttagtgaatt acgtgaaagg ttagatgaga tatggaacat gatccaaaaa 1861 taaaaatgat tgtaagtgcc attttatttg tgatgtgttt aatgatattg ttttatttta 1921 ttttctttga tccacaattt ccggtgattt tgtgtttttc acttttaact tttatcacag 1981 gtattgattt atatatatca tataaaaaga aaaaagcgcg tgataccaat ggcaacaact 2041 aaattaagtg cgactaaatc aacatcacgg gccatcaatt acgctgaaaa acgtgccgtt 2101 gagaaaagtg gcttaaattg tgacgtggac tatgccaaat ctagttttaa agccgctcgt 2161 gaattgtatg gcaaaacaga cggtaatcaa gggcatgtca ttatccaatc gtttcaacct 2221 ggcgaagtga cgcccgaaca atgtaaccaa ttaggattag cgcttgctga aaaactcgtc 2281 cccaatcatc aagtcgccgt ctatacgcat gcagatacaa accatgtaca caatcatatt 2341 gtacttaatt caattgacct caatacaggt aagaaattta acaataataa acaagcccta 2401 cgcgatgtga gagcgttcaa cgacgaggtt tgtcgagcac aggggttgag cgtgcctgag 2461 aaagacacag cacgcttacg ttacacccaa acagaaaaag cgattgccga ccctaacacg 2521 acgtcgacag cacaatactc atggaaagat gacatacgtg aggcaattga ccaatcaaca 2581 gcgacaaata tggaagaatt tcaaaaacat ctgaatcaac atggtattac gattgaacgt 2641 gttaccccca aaagcattac ctatcggcat ttagctgaaa ataaaaaagt acgcgggcgt 2701 aaattgggcg aagattacaa taaaggaggc atccaacatg gctttgaaag acaaatacaa 2761 cgacgacaac aacaaaaaca taaatcagac acgaacttcc agccaaaacg atcaacttca 2821 aaccgtcatg aatcaactga acgagataca ggcgtcactc aatcagattg ggaccaattc 2881 gcccaagaca caaatgagct tgagcgtcgc cgacaagctg cagaatcagc aagacttgtt 2941 gatgaaaagg ctcgaagaga tcgagaaaag agagtacgag agaaaccaac gtcacgacca 3001 attattaaca tcgatcgaga ccacggcctc gaactttaat caagccacag acttcacaca 3061 aaagcgtttt ataagcgcgg caagacatta tattgaacgg attaataacg ataatttaaa 3121 acaagatttt cacacagcta tacaaaaaga attagaagat gtcaaaacag acacacaaaa 3181 cgtagttaag gaagttcaaa acaaccaatc cgaactgcga caagccaata ataattataa 3241 aaaaatgatt gatgaacgta tgaagagcaa cgcaatagtg attaaacaat atgatcaagt 3301 catacatcgt ttaactaaag gcatcacagc catgtttttt atcgttgcct tagtgatggt 3361 cgccttttta gttataagtc ccttaggtga ctggttaggc gtccaacatt tttacgaatg 3421 gctgaaccac gtgcttaaaa cggggcattc agcatggcgt tatttcatgc ttgttttcta 3481 tcttgtacct tatattttat ttggagtgct tatatatgcc attttaaaag catatgagcg 3541 tctttaatac aaaataaata gaaaattacc ttttgtttaa tgaagaagct atatcaagct 3601 taaaatagcg tagaaaccaa aaaggagtgc tcgccttgaa ttctattgtt cactttattt 3661 gtttttttat tgtattttgt ctttttggat atgtggtcaa cttaatattt tttgaaggaa 3721 caaatatttt tctgatttta gaatcagcat ttattttatc attactaatc acaccgatat 3781 taaaggttgt aaaagatatg gaaaatgaag aatagcacat gcgcttatgc cgagaaaatt 3841 tattgagcat tgagaagaac ccttaattaa actgtttcga cgaatgtcgg gatagtgtga 3901 gctatgaaac cgacgagtcg acagttttag ggtttattaa gggttcagag gctcaatgtc 3961 aataaagcaa ttggaataat gcattaaagt tatatcactt attacttttt taaataataa 4021 aaacccacca caaatgtggt gggtttcctt tttgtctttt gaatttgtga ggggcaaatt 4081 gccccgaact ttttaatatc tttttataaa tctttttaaa acctttttag gagtcatttg 4141 atccttagag tgacaataga tttgaaatgt taaaggcaac caatcattaa actaaaggca 4201 accaatcatt aaactaaagg caaccaatca ttaaactaaa ggcaaccaat cattaaacta 4261 aagaaacttt ttttatatta ggtttcttta tgttattatt gtttataaca tagtgattat 4321 aagtatttac aattaaagtt aataggaatc tttattctat ataggtttct tttagattgg 4381 agtggagtta gttgagtgga gaaacagtag tatataaaaa tgatatgaat ttagttccac 4441 tgagaaaatt taataatact gaagttaatc tattttttac tttgtgtaat aaattaaaag 4501 ataaaggcaa tttgactgtt aatgtgccat ttgaagaatt aaaagaatta agtaattact 4561 atagtcatga taaaaagctt tttattcaag atttagaaaa attctatgac aaagttttct 4621 ctttaacata tagagaagaa actgagaatg ttattagaaa atttattctt tttactaaag 4681 tagaaattta taaagataaa gagtatgtgg ctattggtgt taatccagat ttagaacata 4741 ttattaattc attaactagt aacttcacta aatttgaact taaagaaatg acacacctta 4801 aatctacata ttctaagcat atgttcagaa tacttaagca gtataaacat actggctatg 4861 taaaaattaa aattgatgat tttagagaac ggctggatat tcctaatagt taccgtatga 4921 caaatattaa tcaaaaagta ttagccccta tcattaaaga attaggcttt atttttaata 4981 accttaatat caataaaata aaggcaaaaa aaggacgtaa aattgaatgg ttagagttta 5041 cttttgacgc tgagaaacgc attcacaata aacgacagcc acaaatggcg aatatagata 5101 agtcacgaca atatataagt cgggaaaaaa cgccgagatg gttagaagaa cgtacttatg 5161 aaaaacaaat aaaaaatgaa tatgatccac aattagaaaa agagcgaaaa gcatttttaa 5221 aacaacttca attagactgg gaagattaaa acaaaagatc tttagccccc ttgctaaaga 5281 tcttttgttt tgtattttat tttcctgtta attcaggaat tagccaactt agaaaccctc 5341 caataggaaa aacaatccac caatatctag ccataaaatc ccagccattt tttacaggtt 5401 cattttttct atttctattt ttcattccaa tagtcatagg atatttttta tctaattttt 5461 ttgaaataaa aacatttaaa aaataataca ttattgctaa gctcaaaaat aaagcgaaaa 5521 tccaaatgat gcggtaaata ttttgttcta aaccgtttaa ctcacctaca aagattccaa 5581 atagtcctaa aaacacaaaa ataaaactaa atgttattaa tttaatagta aaaagttcat 5641 ttttacgata attaaactgc ttttgttgtt ctttagatat ttccattatt tcctcctcct 5701 tatcagaaga cgagatagat tcgaatagtt cattgactgt cacatctaat gcgtttgaga 5761 cacttttaag tgtttcacta ctaacttctt ctccagcctc cattctttga attgttctta 5821 ctgttacata agccttttct gctaaatttt cttgagttaa cgatttttgt tttctaattt 5881 ctgcaacttt tgatttgttc atactcataa actactcctc aactaaaaaa atgaacacga 5941 aaaattgccg acagatgggc gacaatgaaa cgacagttac ttcaaaatta tattcttaaa 6001 agaaagtata tatctaattt tacaaaaagc ataagaaagg atatactgaa agtaacaaat 6061 agcagatata tcattgtatg tgaaaacccc cagcgtgccg gctgggggtt tctttttact 6121 tatgctcttg ttgtaataga taaagaacat aaccaacaat aattggaaaa atgagcttat 6181 ctagtacaaa tagcaagatt atcattgtat gtgacacctc ctttgtgcac ggaagtgctt 6241 ttccagtata acaaaaaact acaatttaaa acggtgtgtt atcacgtgaa attgtgaata 6301 aagatacaaa agttcactta atgaaaaaga atgaaaacac gtgagaacaa cgatgtataa 6361 aagatgaata aacgataatc acaagacaaa ggcttaaacg ttgatttaac agcgtttaag 6421 cctttattgt tagttgacat aattactgat tataggtagt tagtttgtat agaatacgta 6481 taatttgtaa aattgaatag aatattaaaa aattctatat tttactcttc aaaaatatat 6541 gctaaaacca attaataaat ttatattttt ttcgtcttga ttttt //