LOCUS NC_004924 5616 bp DNA circular BCT 19-JUN-2009 DEFINITION Aeromonas salmonicida salmonicida A449 plasmid pAsa3, complete sequence. ACCESSION NC_004924 VERSION NC_004924.1 GI:32453769 DBLINK Project:16723 KEYWORDS . SOURCE Aeromonas salmonicida subsp. salmonicida A449 ORGANISM Aeromonas salmonicida subsp. salmonicida A449 Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas. REFERENCE 1 (bases 1 to 5616) AUTHORS Boyd,J., Williams,J., Curtis,B., Kozera,C., Singh,R. and Reith,M. TITLE Three small, cryptic plasmids from Aeromonas salmonicida subsp. salmonicida A449 JOURNAL Plasmid 50 (2), 131-144 (2003) PUBMED 12932739 REFERENCE 2 (bases 1 to 5616) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5616) AUTHORS Boyd,J.M., Williams,J., Curtis,B., Kozera,C., Singh,R. and Reith,M. TITLE Direct Submission JOURNAL Submitted (16-MAY-2003) Institute for Marine Biosciences National Research Council of Canada, 1411 Oxford St., Halifax, NS B3H 3Z1, Canada COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY301065. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5616 /organism="Aeromonas salmonicida subsp. salmonicida A449" /mol_type="genomic DNA" /strain="A449" /sub_species="salmonicida" /db_xref="taxon:382245" /plasmid="pAsa3" gene 123..347 /gene="relB" /locus_tag="ASA_pAsa301" /old_locus_tag="pAsa3_01" /db_xref="GeneID:1496843" CDS 123..347 /gene="relB" /locus_tag="ASA_pAsa301" /old_locus_tag="pAsa3_01" /note="RelB" /codon_start=1 /transl_table=11 /product="antitoxin" /protein_id="NP_861560.1" /db_xref="GI:32453770" /db_xref="GeneID:1496843" /translation="MLAIRLPSEIEERLANLAQETGRTKTFYAREAILTHLEELEDYY LAERVMENVRKGEERLFSLDDVERDLGLES" gene 313..600 /gene="relE" /locus_tag="ASA_pAsa302" /old_locus_tag="pAsa3_02" /db_xref="GeneID:1496844" CDS 313..600 /gene="relE" /locus_tag="ASA_pAsa302" /old_locus_tag="pAsa3_02" /note="RelE" /codon_start=1 /transl_table=11 /product="toxin" /protein_id="NP_861561.1" /db_xref="GI:32453771" /db_xref="GeneID:1496844" /translation="MTWSAILAWKVELTDTAKKQLARLDKTQSQRITKYLRRIMMLEN PRDAGKALTGNLRTYWRYRVGDYRVVCDIRDNDLVIVAVIIGHRSEVYGGS" gene 709..1338 /locus_tag="ASA_pAsa303" /old_locus_tag="pAsa3_03" /db_xref="GeneID:3722527" CDS 709..1338 /locus_tag="ASA_pAsa303" /old_locus_tag="pAsa3_03" /note="Orf4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_861562.1" /db_xref="GI:32453778" /db_xref="GeneID:3722527" /translation="MKAIIPLLLALIPLIYIYLKHYAKKANGIVQANLALERLDAQLT SESWWGAKNEFNTLTLNSLKYPEMILYMEKLPVTKRNTRCVSYMKLISVLDELERIPN DVLLSNQDKFDVSSMEMDCLFNKLWKDFDIKAINEDIIAAKIDIVLSIAQSILYFARN GETTQAKRAIMRAGGDEPPLETMHLREEAASVVEFFLLELSSIKKLTAN" gene complement(1772..1840) /locus_tag="ASA_pAsa3s01" /old_locus_tag="pAsa3_s01" /db_xref="GeneID:3722525" misc_RNA complement(1772..1840) /locus_tag="ASA_pAsa3s01" /old_locus_tag="pAsa3_s01" /product="RNAI" /note="antisense RNA; regulator of rep" /db_xref="GeneID:3722525" gene 1914..2900 /gene="rep" /locus_tag="ASA_pAsa304" /old_locus_tag="pAsa3_04" /db_xref="GeneID:1496845" CDS 1914..2900 /gene="rep" /locus_tag="ASA_pAsa304" /old_locus_tag="pAsa3_04" /note="Rep; ColE2-type replication protein" /codon_start=1 /transl_table=11 /product="replication primase" /protein_id="NP_861563.1" /db_xref="GI:32453772" /db_xref="GeneID:1496845" /translation="MVKPALQAAAFVERLPRRPYCTDDPAHGLLIRPQATALAYRHIQ HNPPPHVACLVFDVDSPDGYEAWKEAGLPAPNWVTVNPLNCHAHYGYYLAAVVARTSA AKQKPLRYLAAIEHVLAKRLGADMGYAGLITKNPVHGDWWTIWHHSEPFSLDYLAEFC PDADLAAYSRRSRKEVGGLGRNVTVFDNVREWAYSAVRAYWRPNGYEAWGDAVRSACD SANAFGREQGGPLPVSEIKATAKSIARWVWNRFTPAGFSLVQAHRGAKGGRIGGKLSK GGGRPSNSGKVRNDLLPEVIRLKAMGYSNRDIPEDLQISPGSVSNYLRRDRE" rep_origin 2912..2930 /note="oriV" gene complement(3015..3338) /locus_tag="ASA_pAsa305" /old_locus_tag="pAsa3_05" /db_xref="GeneID:3722526" CDS complement(3015..3338) /locus_tag="ASA_pAsa305" /old_locus_tag="pAsa3_05" /note="Orf1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_861564.1" /db_xref="GI:32453773" /db_xref="GeneID:3722526" /translation="MKDSTDKGTGDMFGEKRGRGRPKTGTAKTGAERQAAFRAKQQEN NVTVTISRELLDGLDAQMQAIRDRGSVVVLTPEQAGEILKAIRKSSLKQLRGQRPRPQ AKPTA" oriT 3437..3455 /note="origin of transfer" gene 3549..3959 /gene="mobC" /locus_tag="ASA_pAsa306" /old_locus_tag="pAsa3_06" /db_xref="GeneID:1496846" CDS 3549..3959 /gene="mobC" /locus_tag="ASA_pAsa306" /old_locus_tag="pAsa3_06" /note="MobC" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_861565.1" /db_xref="GI:32453774" /db_xref="GeneID:1496846" /translation="MTKTARTTTVSVRIDKPTAAEWREKAEAADLSLSDWIRGAIDAN QQMHLPTPRKRAVRVRDTSHDADPVLMRQLAGMSNNLNQIARALNECRLIGSPVQVVE VLALLRSIEGQATHLLPQLPPPPKPNRKGESDAH" gene 3949..5616 /gene="mobA" /locus_tag="ASA_pAsa307" /old_locus_tag="pAsa3_07" /db_xref="GeneID:1496847" CDS 3949..5616 /gene="mobA" /locus_tag="ASA_pAsa307" /old_locus_tag="pAsa3_07" /note="MobA" /codon_start=1 /transl_table=11 /product="mobilization relaxase" /protein_id="NP_861566.1" /db_xref="GI:32453775" /db_xref="GeneID:1496847" /translation="MHIKFLAHGTGSGAHASAYLMGPHDHTGEPRAGVAVLRGDPVLF AAVADSLPFQQRYSSAVISWAAEEAPRPDEISAVLDDFEALAFAGLAREDVHLTAVEH AEADGGVHVHILIPRVHLGSGKSFNPAPPGQRKDFDAVRDKHNHEKGWARPDDPLRAR LLRPDFEAYKAVTDHTAIKKQLTDHLIGAVAQGVVSNADELRAYLQEGLGCEITRTGK DYTSVKPEGYPKAIRLKGELYGESWTAQSTLEREAQAAARAGIGRGGEVSASAARDAQ ERLAGAHQRRAEYNRDRYQGRDRGLAPADLRREQTLENSLEGGQGRSRHAETGLQRLV QSRAAGDFLRGGVTDGKLVWHELDMGADRTRHGDVAEFAARDQQRPEHVGRVAEGGEL LQGGGWKTLHHRPQDWGAVQDRGGQDGRGGALNDRAGAGTVGEAGADRTAARATNRGL EAAIAAASALFERVAKGVQRCAQELREAMQRPARGDPDVAERGNALEQGYQRSARELE QQCQRLEQGAGELAERAGLINEQAKELKESKELELSLEYERYRGLEL" gene 4664..5221 /gene="mobB" /locus_tag="ASA_pAsa308" /old_locus_tag="pAsa3_08" /db_xref="GeneID:1496848" CDS 4664..5221 /gene="mobB" /locus_tag="ASA_pAsa308" /old_locus_tag="pAsa3_08" /note="MobB" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_861567.1" /db_xref="GI:32453776" /db_xref="GeneID:1496848" /translation="MESLGQRKALLSEKLKQRQEQELGEVEKLAQALLETLRSDLQER ISGELNTTVTAIKEGIEDLPQQIYDASRPLKTVLREVKDEADMLKLVSSVWFKAALLG IFCGVGLLMGSWFGMNWIWEQIEQDMGTLRSLRQEISSAQSTLDELPKGVSYFKGEDG KRYIIARKIGAPYKTEAGKMAVEVR" gene 5222..5530 /gene="mobD" /locus_tag="ASA_pAsa309" /old_locus_tag="pAsa3_09" /db_xref="GeneID:1496849" CDS 5222..5530 /gene="mobD" /locus_tag="ASA_pAsa309" /old_locus_tag="pAsa3_09" /note="MobD; putative" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_861568.1" /db_xref="GI:32453777" /db_xref="GeneID:1496849" /translation="MTELERVLLAKLEQIEQRHEQQTEDLRLQLQQQAHSLSALQKVC NDALRSCGKLCSDLHEEIRTLQSGVTHSNKVTSAALGSLNSSVSALNKALENLQSAQG" ORIGIN 1 ctgccgcgcg ttgcttggcg gcccctgcaa cgagattgac agacttcgct agtcacccta 61 gttgcagggg ctggagttta gcgtatgata tacacgtata tcattagcct ttggggtgga 121 ttatgttagc gatacgcttg ccttcggaga tcgaagagcg tttggcaaat ttggcgcaag 181 agacgggaag aacgaagacc ttctatgcac gggaggccat cctgacccat ctggaagagt 241 tggaagatta ctatctggct gagagggtca tggagaatgt tcgcaagggc gaagagcgcc 301 tgttctcatt ggatgacgtg gagcgcgatc ttggcttgga aagttgaatt gaccgatacc 361 gccaagaagc aattggctag gctggataag acccaatcgc agaggatcac aaaatatctg 421 cggcggatta tgatgcttga aaatccgagg gatgctggca aagctctaac cggtaattta 481 cgaacctact ggcgttatcg cgtgggggat tatcgggttg tgtgtgacat aagagataac 541 gatcttgtca ttgttgctgt gataattggg catcgcagtg aagtatatgg tggaagttag 601 tttttgttac tgactgtctt ggtaggaact acaacagatg attgataatg aattacagaa 661 atcatctgct cacaccaaat gcattaaatt aacaagtgag atttattaat gaaagccata 721 attccactgc tacttgctct tatacctctt atatatattt atctaaagca ttacgcaaaa 781 aaagccaatg gaatagtcca ggcaaatttg gcgctagagc gtcttgatgc tcagttaaca 841 tcagagagtt ggtggggggc gaaaaatgaa ttcaacaccc tgactttaaa ttcattaaaa 901 tatccagaaa tgattttata tatggaaaaa ttgcctgtaa caaaaagaaa tactaggtgc 961 gtgtcatata tgaaactaat tagtgtgttg gatgaattgg aaagaattcc taatgatgtt 1021 cttctgagca accaagacaa gtttgatgtt agcagcatgg aaatggattg tcttttcaat 1081 aagctgtgga aagatttcga tataaaagct atcaatgaag acattatagc tgctaagatc 1141 gatattgttt tatccatagc gcaatcaatt ctttattttg caagaaatgg tgaaaccacc 1201 caagcaaaaa gagctataat gagagctggc ggagatgagc caccactaga aacaatgcat 1261 ttgcgcgaag aggcagcttc tgttgttgaa ttcttccttc ttgaactctc ttctataaaa 1321 aagctaaccg cgaattaaga taataagtgc aacgcgtgag gaggttgtgg tgagtcggct 1381 aactgccggg tcactccaca cattgtccgc gaaagacgag cgaaaagatg tacgagcagc 1441 taactgaagg ccaacgaggg ggggggctag gggttataag ccggaagcca agaaaattcc 1501 gctggtaaac gtttaggctg atctttccgt ctacaaattg tatccgacag ggtttgccgt 1561 atatgttttg ctcatagctg cgcgtatttt tcgacccaat acgggctatg tcgggaagca 1621 actgttttac gacaactcgc gccaacactg gtttttctgg cgagacggaa aaaactggaa 1681 ttccggcgta gaacctcaga tcggacatcg tagtgaggtg tatggctaaa cgttgctcag 1741 gcgtaggcac ctgcggtaac gtactgtcca gaaaagacaa accccgaatc tctgttttca 1801 acttggcgga agagcacaga gagttcgggg ccggacttat gcaaagcaat aggtgaaata 1861 tatcacatgg gtcacaccaa acaagccagc accgccaata agcgcggtgt ccaatggtaa 1921 aaccagcgct tcaagccgct gcctttgtcg aacgtctccc ccgccgcccc tactgcaccg 1981 atgatccggc gcatgggctg ctgatccgcc cgcaagcgac cgcgctggct tatcgccata 2041 tccagcacaa cccgccgccg cacgtggcct gtctggtgtt cgatgtggac agcccagacg 2101 gctatgaggc gtggaaggag gccggattac ccgccccgaa ctgggtcacg gtcaaccctc 2161 tcaattgtca cgctcactac ggatactatc tagcggctgt cgtggcccgt accagtgcgg 2221 ccaagcaaaa gccgttgcgc tatctggcgg ccatagaaca cgttctggcg aagcggttgg 2281 gggccgatat gggatatgca gggcttatca ccaaaaaccc cgtacatggc gattggtgga 2341 cgatatggca tcacagcgag ccgtttagcc tcgactatct ggcggagttc tgccctgatg 2401 cggatttggc ggcctatagt cgccgcagtc gcaaagaggt cggcggactg ggccgtaacg 2461 tcacggtgtt tgataacgtg cgtgaatggg cctacagcgc cgttagggcg tattggcggc 2521 ctaacgggta cgaggcttgg ggcgatgcgg tgagatctgc ttgtgatagc gctaatgcgt 2581 ttggacggga gcagggcggc ccgcttccag tgtcagagat caaggccacg gcaaagagta 2641 tcgcccgttg ggtatggaat cgattcaccc ccgccgggtt tagcctggtg caggcgcatc 2701 gaggagcgaa gggtggacgc atagggggga agctatccaa aggcggtggc aggccgagca 2761 atagtgggaa agttcgcaat gacttgctcc ccgaagtgat caggctcaaa gctatgggtt 2821 acagtaaccg cgatattcca gaggatctgc aaatttcgcc gggcagcgtg tccaattacc 2881 tccgtcgtga tcgtgagtga tcaaaacaaa gccttatcag ataacagcgc cccgtaaggg 2941 gcgttttcgc ttctcaaagt attcgagaga gaaccttggc gaggtgggca agcgcccgaa 3001 ccgtaggccg tccatcaggc cgtgggtttg gcctgtgggc gggggcgttg tccacggagc 3061 tgctttaggc ttgatttgcg tatggccttc aagatctcgc ccgcctgttc cggtgtcagc 3121 accacgaccg aaccgcgatc cctgatcgcc tgcatttggg catccagtcc atccagcagt 3181 tcccgactta tcgttactgt aacgttattc tcctgctgtt tggcacgaaa ggctgcttga 3241 cgttccgccc cagtctttgc ggttcctgtc ttgggtctac cccgtccgcg cttctcgcca 3301 aacatatctc ccgttccctt gtcggtgctg tccttcatag ccactccatt tttagtcact 3361 gtgacaataa aagattatgc gttattgtaa cggtaattac caatttttca ggccccagct 3421 tgcatgctaa cttggattaa gccagcctac ccgtattact gtttcgcccg cttcgcggct 3481 cacagtaaca cggggctggt gaggggcttc gccccttcaa tccccacaca aaaaacaccg 3541 gaggcaccgt gaccaaaacg gccagaacga ccaccgtcag cgtgcggata gacaagccga 3601 ccgccgccga atggcgagag aaggcggagg cggcagacct cagtttgtcg gactggatca 3661 ggggggctat cgatgccaat caacaaatgc acctgccgac cccgcgcaag cgagcggtcc 3721 gagtgcgaga taccagccac gatgcggatc cggtgctgat gcggcaattg gcagggatga 3781 gcaacaacct caaccagatc gcccgcgccc tgaacgagtg ccggctgatc ggttcaccgg 3841 tgcaagtggt cgaagtgctg gccctgcttc gcagtatcga ggggcaggcc acgcacctgc 3901 tgccccagtt gccgccgccc cccaagccga accgcaaggg ggagagcgat gcacattaag 3961 ttccttgccc acggcacggg aagcggtgct cacgcctcgg cctacctcat ggggccgcac 4021 gatcacacag gggagccacg ggctggggtg gcggtactgc ggggggatcc ggtgctgttc 4081 gcggcggtgg ccgactcgct gccctttcag cagcgctata gcagcgcggt gatctcatgg 4141 gctgccgaag aggccccgcg accggacgag atcagcgctg tgctggacga cttcgaggcg 4201 ctggcatttg ccggactggc gcgggaggac gtgcatttga ccgcggttga gcacgccgaa 4261 gcggatggcg gggtgcatgt gcatatcctg atcccccgtg ttcacctggg cagcggcaaa 4321 tcgttcaatc cggccccgcc agggcagcgc aaagacttcg atgcggtgag ggacaagcac 4381 aaccacgaaa aggggtgggc gcggccagac gacccgctca gggcgcggct gttgcggccc 4441 gattttgaag cgtacaaggc cgtgacagac cacacagcca tcaaaaagca gctcaccgac 4501 cacctgatcg gtgcagtcgc gcaaggggtg gtgagcaatg ctgatgaact gcgggcctac 4561 ctgcaagagg ggctagggtg cgagataacg cgcacaggca aggattacac cagcgtcaag 4621 ccggagggat acccgaaggc gatccggttg aaaggggagt tgtatggaga gtcttggaca 4681 gcgcaaagca ctcttgagcg agaagctcaa gcagcggcaa gagcaggaat tgggcgaggt 4741 ggagaagtta gcgcaagcgc tgctagagac gctcaggagc gacttgcagg agcgcatcag 4801 cggcgagctg aatacaaccg tgaccgctat caaggaaggg atcgaggact tgccccagca 4861 gatctacgac gcgagcagac ccttgaaaac agtcttgagg gaggtcaagg acgaagccga 4921 catgctgaaa ctggtctcca gcgtctggtt caaagccgcg ctgctgggga ttttctgcgg 4981 ggtggggtta ctgatgggaa gctggtttgg catgaactgg atatgggagc agatcgaaca 5041 agacatgggg acgttgcgga gtttgcggca agagatcagc agcgcccaga gcacgttgga 5101 cgagttgccg aagggggtga gctacttcaa gggggaggat ggaaaacgct acatcatcgc 5161 ccgcaagatt ggggcgccgt acaagacaga ggcgggcaag atggccgtgg aggtgcgcta 5221 aatgacagag ctggagcggg tactgttggc gaagctggag cagatcgaac agcggcacga 5281 gcaacaaacc gaggacttga ggctgcaatt gcagcagcaa gcgcactctt tgagcgcgtt 5341 gcaaaaggtg tgcaacgatg cgctcaggag ctgcgggaag ctatgcagcg acctgcacga 5401 ggagatccgg acgttgcaga gcggggtaac gcactcgaac aaggttacca gcgcagcgct 5461 agggagcttg aacagcagtg tcagcgcctt gaacaaggcg ctggagaact tgcagagcgc 5521 gcagggctga tcaacgagca ggccaaggag ctcaaggaga gcaaagagct ggagttatcg 5581 ctggagtatg agcggtatag agggcttgag ctgtag //