LOCUS NC_004923 5424 bp DNA circular BCT 19-JUN-2009 DEFINITION Aeromonas salmonicida salmonicida A449 plasmid pAsa1, complete sequence. ACCESSION NC_004923 VERSION NC_004923.1 GI:32453760 DBLINK Project:16723 KEYWORDS . SOURCE Aeromonas salmonicida subsp. salmonicida A449 ORGANISM Aeromonas salmonicida subsp. salmonicida A449 Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas. REFERENCE 1 (bases 1 to 5424) AUTHORS Boyd,J., Williams,J., Curtis,B., Kozera,C., Singh,R. and Reith,M. TITLE Three small, cryptic plasmids from Aeromonas salmonicida subsp. salmonicida A449 JOURNAL Plasmid 50 (2), 131-144 (2003) PUBMED 12932739 REFERENCE 2 (bases 1 to 5424) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-JUL-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5424) AUTHORS Boyd,J.M., Williams,J., Curtis,B., Kozera,C., Singh,R. and Reith,M. TITLE Direct Submission JOURNAL Submitted (16-MAY-2003) Institute for Marine Biosciences National Research Council of Canada, 1411 Oxford St., Halifax, NS B3H 3Z1, Canada COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY301063. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5424 /organism="Aeromonas salmonicida subsp. salmonicida A449" /mol_type="genomic DNA" /strain="A449" /sub_species="salmonicida" /db_xref="taxon:382245" /plasmid="pAsa1" gene 1014..1256 /gene="relB" /locus_tag="ASA_pAsa101" /old_locus_tag="pAsa1_01" /db_xref="GeneID:1496836" CDS 1014..1256 /gene="relB" /locus_tag="ASA_pAsa101" /old_locus_tag="pAsa1_01" /note="RelB; Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor" /codon_start=1 /transl_table=11 /product="bifunctional antitoxin/transcriptional repressor RelB" /protein_id="NP_861552.1" /db_xref="GI:32453761" /db_xref="GeneID:1496836" /translation="MGTINLRIDDELKTRSYAVLERLGVTPSELLRQTLEYVASQERL PFRTTVVTEDEEALLVLVRERLASPQKGIRVSLDDL" gene 1246..1533 /gene="relE" /locus_tag="ASA_pAsa102" /old_locus_tag="pAsa1_02" /db_xref="GeneID:1496837" CDS 1246..1533 /gene="relE" /locus_tag="ASA_pAsa102" /old_locus_tag="pAsa1_02" /note="RelE" /codon_start=1 /transl_table=11 /product="toxin" /protein_id="NP_861553.1" /db_xref="GI:32453762" /db_xref="GeneID:1496837" /translation="MTFELEFDPRAWKEWKKLGDTVRQQFKKKLAEVLERPRVEANRL HGLPDCYKIKLRGAGYRLVYQVQDDRVLVFVVAVGKREREQVYLDAGYRLE" gene complement(1578..1649) /locus_tag="ASA_pAsa1s1" /old_locus_tag="pAsa1_s1" /db_xref="GeneID:3722523" misc_RNA complement(1578..1649) /locus_tag="ASA_pAsa1s1" /old_locus_tag="pAsa1_s1" /product="RNAI" /note="antisense RNA; regulator of rep" /db_xref="GeneID:3722523" gene 1717..2724 /gene="rep" /locus_tag="ASA_pAsa103" /old_locus_tag="pAsa1_03" /db_xref="GeneID:1496838" CDS 1717..2724 /gene="rep" /locus_tag="ASA_pAsa103" /old_locus_tag="pAsa1_03" /note="Rep; ColE2-type replication protein" /codon_start=1 /transl_table=11 /product="replication primase" /protein_id="NP_861554.1" /db_xref="GI:32453763" /db_xref="GeneID:1496838" /translation="MVKPALQAAEFVERLPLRPYCTDDPALGLHIRPQATALAFRHIQ HNPPPYVSCIVFDVDRKPYEQRREGYQEWRERGLPAPHWIAINPENGNYHLGYLLAAP VARTNAARLKPLRYLAAIEHVLAKKLGADMGYVGLITKNPVHSDWWTVWHNHAPYSLD YLAEFCPDADLAAYNRRSGKEASGLGRNVTVFDNVREWGYSAVREHWRPNGYDAWADA VRAACESANAFGREQGGPLPHSEIKATAKSIARWIWRHLTPTSFADYVDRTHTPEIQA RRGAKGGKVSKGGGRPSKAAELLPEVLRLKAMGYSNRDIAEDLQISAGSVSNYLRCDL E" rep_origin 2736..2755 /note="oriV region" gene complement(2840..3163) /locus_tag="ASA_pAsa104" /old_locus_tag="pAsa1_04" /db_xref="GeneID:3722524" CDS complement(2840..3163) /locus_tag="ASA_pAsa104" /old_locus_tag="pAsa1_04" /note="Orf1" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_861555.1" /db_xref="GI:32453764" /db_xref="GeneID:3722524" /translation="MKDTTDQGTGDMFGIKRGRGRPKTGAAKSGAERQAAYRAKLADI NVTVTINRELIDGLSVHLQAIRDGWSEVPLTPEQAGEILKALRTAELKQLRGQHPRPQ AKPTA" oriT 3260..3278 /note="origin of transfer" gene 3372..3782 /gene="mobC" /locus_tag="ASA_pAsa105" /old_locus_tag="pAsa1_05" /db_xref="GeneID:1496839" CDS 3372..3782 /gene="mobC" /locus_tag="ASA_pAsa105" /old_locus_tag="pAsa1_05" /note="MobC" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_861556.1" /db_xref="GI:32453765" /db_xref="GeneID:1496839" /translation="MSKVQKITTVSVRIDKPTAAEWRERASASGLSLSDWIRGAVDAN QQTNLPTPQRRPVRVRDTSNDADPALMRQLAGMSNNLNQIARALNECRLAGSSVQLVE VLALLRSIEVQAGRLLPQLPPPPKPMAKGRDDAH" gene 3772..5424 /gene="mobA" /locus_tag="ASA_pAsa106" /old_locus_tag="pAsa1_06" /db_xref="GeneID:1496840" CDS 3772..5424 /gene="mobA" /locus_tag="ASA_pAsa106" /old_locus_tag="pAsa1_06" /note="MobA" /codon_start=1 /transl_table=11 /product="mobilization relaxase" /protein_id="NP_861557.1" /db_xref="GI:32453766" /db_xref="GeneID:1496840" /translation="MLIKFLSHGTGSGARASAYLMGSHDHTGAPRAGVAVQRGDPVLF AAVADSLPFQHRYASAVISWATEEAPTADEITAVLEDFEAVAFAGLEPEDVHLTAVQH DEPDGGVHVHILIPRVHLGTGKSFNPAPPGHRKAFDAVRDKHNHEKGWARPDDPLRAR LLRPDFEAFKDKSDKSAIKKQITEHLLGAAAQGVISNAAELQDYLQTSLGCEITRTGA DYTSIKPEGYPKAIRLTGELYGSSWTAERTLEREAQTAARAGIGRGGEVSESGARQAQ ERLRDACGRRAEYNRGRYPGRDKGIAQTDHRLDRPIEGGLGAGPERGQHPQADLQRLA QSLAVRGMHLRGDRAGELGGIELDGQRGSAVEQRDQQRESHAGAASGRSELRPGGWQE LHPRSDIGKNVRNAKWQDGGGDQVNDRIRTPTDRAAGADGAAAPQRDDGLAAAALRAT DVFGELAKAVGEHLGRVRDALRQLTHRIRGLGEEHKERASQHGPEFGPDQPGYRSSTW VIEQQCGRSQELAGELDQGAALIADRAAELRKEQRRDRGLSM" gene 4487..5020 /gene="mobB" /locus_tag="ASA_pAsa107" /old_locus_tag="pAsa1_07" /db_xref="GeneID:1496841" CDS 4487..5020 /gene="mobB" /locus_tag="ASA_pAsa107" /old_locus_tag="pAsa1_07" /note="MobB" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_861558.1" /db_xref="GI:32453767" /db_xref="GeneID:1496841" /translation="MDHLGQQKERLSERLKQRQEQELGEVEKLAKAVLDKLKKDLETR VDGELNTTVDAIRDGIKGLPKQITDSTDPLKEVLEQARSEANTLKLISSVWLKALLFG VCISVGIGLGSWGVLSWMGNEVQRLNSEISSAKATLAQLPAGVSFVREDGKSYILAPT LGKTYETQSGKMAVEIK" gene 5021..5362 /gene="mobD" /locus_tag="ASA_pAsa108" /old_locus_tag="pAsa1_08" /db_xref="GeneID:1496842" CDS 5021..5362 /gene="mobD" /locus_tag="ASA_pAsa108" /old_locus_tag="pAsa1_08" /note="MobD; putative" /codon_start=1 /transl_table=11 /product="mobilization protein" /protein_id="NP_861559.1" /db_xref="GI:32453768" /db_xref="GeneID:1496842" /translation="MTELERLLIERLEQMELRHHNETMDLRQQLYAQQMSLESLQRQL GSTLEGYETHCASLHTAFVALEKSTRSELASMGRSLDQTNRVTGAVLGSLNSSVAGVK SSLESLIKAQR" ORIGIN 1 tatatcgtca cagtgacaat aattaaggag atcgggtatg aaatcaggtc ggttgggtac 61 tcctgacacg gtggcgcata ttcgccagtt tcccccggtt gggtacgaac tggcgagcta 121 tcaaggctcc ccgtggctat gggccgatgg aaagccgctg atcgacctcc tcgatgcgac 181 catcgactgg ctgatcgatg acgacggcag ccgctggatc gtcattgata ccgagtgcct 241 gcgccagcat gtggcccact atgccctgtt gtccgccgat acatggcggc aacggctgct 301 cgatgcaggt gtggaggtgg attaaggtgc gattgagtga ttggtttccg gggctgatgc 361 tgtggcatac ggtggcggta ctggccgccg tgttcgcggc gaaagccctg ctgtactgtg 421 ctgcggactg gttgggcctt gggccgctct acagcgcctt ggcggggcct tcttgggacg 481 tggcggcatg gatagcgttg ttggccctgc tgctgcggtg gatgaaggtc tagcccgttc 541 tgccgcgctg cgcttggcgg ccactatagc gggcgcgaca gactgcgcta gtcgtgtccg 601 ctatagtggc tcgtaatttt gttcatctaa caaccataaa ggacttcgaa tggaaggcac 661 acatctaaga cacattaatg atgaagagtt tagcccttta ctgcttgccg cttgcatcac 721 gggtcacgat taccgcgacg cgtttaaaat attgcgagag caaggttgtt ctttgataaa 781 taagaaattt tattatgatg acactcacaa aatctctact gggttagaga gcgtaaacca 841 acaaaaacta actctaatgg cctatgtcag cataggagaa tacctagcta aaactggggg 901 ggatgaaggt attcaacagc atcttaatga tattttttat caagtagttg agcttaaaaa 961 tagagaatac gctaatatgt aagtacaaac gtacttacac ctggggtttg gatatgggga 1021 cgattaacct tcgcatcgat gatgagctga aaacccgctc gtatgcggta cttgaacgac 1081 ttggtgtaac tccatctgag ttactgcgac aaactctgga atatgtggcc tctcaggaac 1141 gactgccttt tcggacgacc gtggtaacgg aggatgagga ggcattgctt gttcttgttc 1201 gtgagcggct ggccagcccc cagaaaggga tcagggtgtc gctggatgac ctttgagctt 1261 gagttcgacc cacgagcgtg gaaggaatgg aagaagttgg gcgatacagt tcgccagcag 1321 ttcaaaaaga agctggcaga ggtgctggag cgacctaggg tagaggcgaa tcgtctgcat 1381 gggctgccgg actgctacaa gattaagctg cgtggggctg ggtaccggtt ggtgtatcag 1441 gtacaggatg atcgggtgct ggtcttcgtg gtcgcagtgg gtaaacgaga gcgggagcag 1501 gtgtatctgg acgctggtta tcggctggaa taggtgaagt tgccgtgggg tggctagtac 1561 ggtaacgtac tgtccagaaa agacaaaccc cgaatctctg tttagtcaac ttggcgggag 1621 acaacagagg attcggggcc gttcactaag aacaggaaaa gcataacata tgcacgttct 1681 cagacaaccc agcaccgcca ataagcgcgg tgatcgatgg taaaaccagc gcttcaagcc 1741 gccgaattcg tcgaacggct ccccctccgc ccctactgca ccgacgatcc ggcgttgggt 1801 ctgcatatcc gcccgcaggc aactgcgctg gccttccgtc acattcagca caacccaccg 1861 ccgtatgtct cctgcattgt gtttgatgtg gacagaaagc cctatgagca gcggcgagaa 1921 gggtatcaag agtggcgaga gcgtggcttg cctgcgccgc attggatcgc gatcaacccc 1981 gaaaacggca actaccatct tggctatctg ctggcagcgc cagtggcgcg taccaatgca 2041 gccaggctaa agccactgcg ctatctagcg gctatagagc acgtgctggc gaagaagctg 2101 ggcgctgaca tggggtacgt tgggttgatc accaaaaacc ccgtacacag cgattggtgg 2161 acggtatggc ataaccatgc gccctattcc ctcgactacc tcgccgagtt ctgcccagat 2221 gcggatttag cggcctacaa ccgccgcagc ggcaaagagg ctagtgggct ggggcgtaac 2281 gtcactgtgt tcgataacgt gcgggaatgg ggctacagcg cagtgcggga gcattggcgg 2341 cccaatggat acgacgcatg ggcggatgcg gtgagagctg cctgtgagag cgccaatgcg 2401 tttggacgcg agcagggcgg cccgttgccc catagtgaga tcaaggcaac tgccaagagt 2461 atcgcccgtt ggatctggcg gcaccttacc ccgacctcgt ttgcggatta cgttgatcgg 2521 acacataccc ccgagatcca agcgcggaga ggggctaagg gcggcaaggt atccaagggc 2581 gggggcaggc ccagcaaagc ggcagagctg ctgccggaag tattgcggct caaagcaatg 2641 ggctacagca accgcgatat agccgaggat ctgcaaatct cggctggcag tgtgtccaat 2701 tacctccgtt gtgatcttga gtgatcaaaa acaagcctat atcagataac agcgcccgga 2761 gggcgttcct ttatccctcc agtatttgag agagaggctc ggtgcgaggt gggcaagcgc 2821 ccgaaccgta ggccgtccat caggccgtgg gtttggcctg tgggcggggg tgttgtccac 2881 ggagctgttt tagttctgcc gttcttagcg ccttcaagat ctcgccagcc tgctctgggg 2941 ttaatggtac ttctgaccat ccatccctga tcgcctgcaa atgtactgac agcccatcta 3001 tcagctctct atttattgtc accgtgacgt taatatctgc caattttgca cggtaggctg 3061 cttgccgttc tgccccgctt ttggctgctc ctgtctttgg cctaccccgt ccgcgcttga 3121 tgccaaacat gtccccagta ccctgatccg tggtgtcctt cattgtgcta tttcctgtca 3181 ctgtaacggt aattgattat gtgtcatcgt gacgataatt agcaagttgc cgcccctctc 3241 tttttttgct gtactggtta ttagccagcc cacccgtatt acgttttagc ctgcttcgcg 3301 gctcaacgta acacggggct ggtgaggggc tatgcccctt caatccccca cacaccacag 3361 ccggaggccg cgtgtccaag gtccaaaaga taaccaccgt cagcgtcagg atcgacaagc 3421 cgaccgccgc cgaatggcgt gaacgtgcta gcgcctctgg actcagtttg tctgactgga 3481 tccggggggc ggtggatgcc aatcagcaga cgaatttgcc gacgccccag cgccgtcccg 3541 tccgtgtccg cgataccagc aacgatgccg atccggcgtt gatgcgccag ttggccggga 3601 tgagcaacaa cctcaaccag atagcccgag ctctgaacga atgccggttg gccggctcgt 3661 cggtgcaact ggtggaagtg ctggccctgc tgcgcagcat agaggtacag gcgggacgcc 3721 tgctgcccca gttgccgcca cccccaaagc ctatggccaa agggcgtgac gatgctcatt 3781 aaattccttt cccacggtac gggcagcggt gcccgtgctt cggcctacct catgggctcg 3841 cacgaccaca caggtgcacc acgggcaggt gtggcggtac agcggggtga tccggtgttg 3901 tttgcggcgg tggccgactc gcttccgttc cagcatcgtt acgccagcgc agtgatctcg 3961 tgggcgacgg aagaggcccc gaccgccgac gagattactg cggttttgga ggacttcgag 4021 gcggtggcgt ttgctgggtt ggagccggaa gacgtccacc tgacggcggt ccagcacgac 4081 gaaccggatg gcggggttca cgtccacatc ctgatccccc gtgttcacct gggcacaggc 4141 aaatcgttca acccggcccc accaggtcac cgtaaagcct ttgatgcggt gagggataaa 4201 cacaaccacg aaaagggctg ggcgcggcca gacgacccgc tccgggcgcg gttgctacgg 4261 cccgactttg aggcgttcaa ggacaagagc gacaagagcg ccatcaaaaa gcagattacc 4321 gaacacctac ttggtgccgc cgcgcagggg gtgatttcca atgcggcgga gctgcaggac 4381 tacctacaaa catcgctcgg gtgcgaaatc acgcgcacag gggccgatta caccagcatc 4441 aagcctgagg gctatcccaa agctatccgg ttaacagggg aactctatgg atcatcttgg 4501 acagcagaaa gaacgcttga gcgagaggct caaacagcgg caagagcagg aattgggcga 4561 ggtggagaag ttagcgaaag cggtgctcga caagctcaag aaagacttag agacgcgtgt 4621 ggacggcgag ctgaatacaa ccgtggacgc tatccgggac gggataaagg gattgcccaa 4681 acagatcacc gactcgaccg acccattgaa ggaggtcttg gagcaggccc ggagcgaggc 4741 caacaccctc aagctgatct ccagcgtctg gctcaaagcc ttgctgttcg gggtatgcat 4801 ctccgtgggg atcgggctgg ggagctgggg ggtattgagc tggatgggca acgaggttca 4861 gcggttgaac agcgagatca gcagcgcgaa agccacgctg gcgcagcttc cggccggagt 4921 gagcttcgtc cgggaggatg gcaagagtta catcctcgct ccgacattgg gaaaaacgta 4981 cgaaacgcaa agtggcaaga tggcggtgga gatcaagtaa atgaccgaat tagaacgcct 5041 actgatcgag cggctggagc agatggagct gcggcaccac aacgagacga tggacttgcg 5101 gcagcagctc tacgcgcaac agatgtcttt ggagagcttg caaaggcagt tggggagcac 5161 cttggaaggg tacgagacgc actgcgccag cttacacacc gcattcgtgg ccttggagaa 5221 gagcacaagg agcgagctag ccagcatggg ccggagtttg gaccagacca accgggttac 5281 cggagcagta cttgggtcat tgaacagcag tgtggccgga gtcaagagct cgctggagag 5341 cttgatcaag gcgcagcgtt gatcgccgac agggctgcag agctgcgaaa agagcagcgg 5401 agagatcgtg ggttgagcat gtga //