LOCUS NC_004720 7966 bp DNA circular BCT 08-MAY-2009 DEFINITION Chlamydophila caviae GPIC plasmid pCpGP1, complete sequence. ACCESSION NC_004720 VERSION NC_004720.1 GI:29839220 DBLINK Project:228 KEYWORDS . SOURCE Chlamydophila caviae GPIC ORGANISM Chlamydophila caviae GPIC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydophila. REFERENCE 1 (bases 1 to 7966) AUTHORS Read,T.D., Myers,G.S., Brunham,R.C., Nelson,W.C., Paulsen,I.T., Heidelberg,J., Holtzapple,E., Khouri,H., Federova,N.B., Carty,H.A., Umayam,L.A., Haft,D.H., Peterson,J., Beanan,M.J., White,O., Salzberg,S.L., Hsia,R.C., McClarty,G., Rank,R.G., Bavoil,P.M. and Fraser,C.M. TITLE Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae JOURNAL Nucleic Acids Res. 31 (8), 2134-2147 (2003) PUBMED 12682364 REFERENCE 2 (bases 1 to 7966) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7966) AUTHORS Read,T., Myers,G., Brunham,R., Nelson,W., Paulsen,I., Heidelberg,J., Holtzapple,E., Khouri,H., Fedorova,N., Carty,H., Umayam,L., Haft,D., Peterson,J., Beanan,M., White,O., Salzberg,S., Hsia,R.-C., McClarty,G., Rank,R., Bavoil,P. and Fraser,C. TITLE Direct Submission JOURNAL Submitted (29-OCT-2002) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AE015926. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7966 /organism="Chlamydophila caviae GPIC" /mol_type="genomic DNA" /isolate="GPIC" /db_xref="taxon:227941" /plasmid="pCpGP1" gene 675..1415 /locus_tag="CCAA00001" /db_xref="GeneID:1217679" CDS 675..1415 /locus_tag="CCAA00001" /note="similar to PIR:H39999, GB:L04791, SP:Q03468, and PID:182181; identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP6-D" /protein_id="NP_829874.1" /db_xref="GI:29839221" /db_xref="GeneID:1217679" /translation="MSKLIKEASAFFQKNQENTVKEFHKKEFAMDVFSISLSEDEKEK IENLIVSQHGNFDDECSHGLASIKLLTGQIKSIQKQHVLLIGEKIYKVREILRAMNSP DTTFSAWINLVFHTKSSAYNALGYYELFISLPDKDTKSLFQSIPYKTAYLLASRKGSV KDKVKVLGKIEGMSNTAAIDILNRFLPSLRASQTERSINFEDKNKELSEKLMEILKTV CSGLELSEYNKNLLQQLFEKTLQANSRC" gene 1638..2561 /locus_tag="CCAA00002" /db_xref="GeneID:1217680" CDS 1638..2561 /locus_tag="CCAA00002" /note="similar to SP:P10561, GB:X64318, GB:U26173, GB:S79880, PID:1237118, and PID:30956; identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence plasmid integrase pGP7-D" /protein_id="NP_829875.1" /db_xref="GI:29839222" /db_xref="GeneID:1217680" /translation="MSGLSHYHKSRLFLTILEAANVWLATLSPITRKNYASGIKFLVS NNILDGSMKLESLICFDHCDVLNKIKSLTYTYTGKTVSEASKQARAACYISFTKFLYR LTKGVVKQACPSRDFGNSTFYKIRDKVKTEFISKKEWLLFFDSLKRISFRDYLIGKLI IQGVRKLSEVISLRTEDLSFAQNQVTFKVKKRQNRYQEVKVSYPNFLMQELRSYLGNR EGWVFISREGEQVAINQVYYYFKLAESDINSPIKVTPHVLRASALAYLKKMGFADQEI MRISCLSSTQMLSAYDTGMTDNLTSQLPLIF" gene complement(2622..3629) /locus_tag="CCAA00003" /db_xref="GeneID:1217681" CDS complement(2622..3629) /locus_tag="CCAA00003" /note="identified by match to PFAM protein family HMM PF00589" /codon_start=1 /transl_table=11 /product="virulence plasmid integrase pGP8-D" /protein_id="NP_829876.1" /db_xref="GI:29839223" /db_xref="GeneID:1217681" /translation="MRKDNSLHKSLDTVFGNKVYQSNLSHQELLSIRNERIWEGLRDI QLSEAIFIWLSSLNNHTARSYKGSVLALEKIGLISLNISLQEFALLNHNIILDSIKQV PMKIIPWSEGTKQVRAACYISLTKFLNRATSGLISIAQPSHQESNKTFYKIRDLVKTN AMNEVERVMFLKALEKINHRDWLIAQTILQGAKRVTEALSVTVDKISFENGTISFDQS KSRGMSKTTIITYPQRFMRLMQNYVGNRLGLVFITKTGKSVGLKQLAGTFAKAGVKAR IPFKVTPHVLRATAVTEYKKMGCSDSDIMKVTGHSSSKMIYAYDKSTTSENASKKVSL I" gene 3733..5109 /locus_tag="CCAA00004" /db_xref="GeneID:1217682" CDS 3733..5109 /locus_tag="CCAA00004" /note="similar to SP:P10555; identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence plasmid replicative DNA helicase pGP1-D" /protein_id="NP_829877.1" /db_xref="GI:29839224" /db_xref="GeneID:1217682" /translation="MIKQSEEERELLDVEFFVLGQAVNYLEHAHTIVRRLSENHFKSE NHKNLFILIRDILRDRDTISISLIWEEIKRRNLDKRMDVSYLIHMSQNADIPIDLDHH IDFLHEKHVNNLLKEFLDSSFQDFTRYPNRRSPFTLIDQFKERLDDIHKKTSYPRRKN IGKTVYDIFASGDDGKNSVISQIRHRYDYRSRHQIDYVDGLSTGYSSIDENSIILSKG NFVVVAARPAMGKTAFAIDIALNLVLEQEKAVGFISLEMSPNQIVERVVSNLSEISCE QLKRGNFSRDVLSKIENIGMRLKGTHFFICDNKSTDLNTLIDQARELRENQGIDALFI DYLQLIGSNKKAENRQNEIAEISRQLRKLAGELQIPIVCLSQLSRKVEDRGDKRPMLS DLRDSGQIEQDADVILFLHRKDYYSQEATKGLSEIIIGKNRHGSVFSTNLRFNSSTGK FSVQKEAW" gene 5103..6146 /locus_tag="CCAA00005" /db_xref="GeneID:1217683" CDS 5103..6146 /locus_tag="CCAA00005" /note="similar to GB:M60502, GB:M24355, GB:M96943, GB:M60500, GB:L01089, GB:M60494, GB:M60499, GB:M60501, GB:M60503, GB:M60495, GB:L01090, SP:P20930, and PID:190394; identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP2-D" /protein_id="NP_829878.1" /db_xref="GI:29839225" /db_xref="GeneID:1217683" /translation="MVKSENQIIKSSLHLENQKFGRKPQLSEDQLELFSSICTESKIE VIGLDLQPSHYHALAAIQKLLTATNYRGNLEGSYLSRETNTFKFEGTIPRIKFTKAEY LEAYGVKKYKTARNKNEFGGKEALIALEALYHLGNEPYLIVATRKRWNKGEEVVDRYQ TFSPILRICEGWEGLTPKENKALDEEPFLNLISKKHKGFIIEPCPIIVDQIDSYFVLK PANMYQEIKLRFPNASKFTYTFIDWIVSTATRKKMNSSGLKEWPDKIEIGFETLSYTL RMNRYITSRNWKKIESAINRCIEIAIELKWLNKHERIQGKTISKKEVFYLNKSKFQQI STNKTIQNTTNNN" gene 6201..6995 /locus_tag="CCAA00006" /db_xref="GeneID:1217684" CDS 6201..6995 /locus_tag="CCAA00006" /note="similar to SP:P10557, GB:X52947, GB:M65188, SP:P17302, PID:181209, and PID:29917; identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP3-D" /protein_id="NP_829879.1" /db_xref="GI:29839226" /db_xref="GeneID:1217684" /translation="MGNSGFYLNNNQNCVFADNIKVGQMQNPLQDQQLILGTTSTPTA AKITAKEGLKVDFETADSNNASINLSVDSDALSKLILDQIQKDLVDAIIGNITNSLIQ EVIDKIISDPTLALTKAFKNFSISDKIQCNGLFTKTNIGTLLGGTEIGTFTITPDNAD SMFLISADIIASRMEGNVVLALVKEGDSAPCAVSYGYSSGIPNVCSLRTAVSNSGANP VTFSLRVGGMESGVVWVNALANGDSILGTTTTSNISFLEVKQQTNG" gene 7093..7401 /locus_tag="CCAA00007" /db_xref="GeneID:1217685" CDS 7093..7401 /locus_tag="CCAA00007" /note="similar to GP:1124830, GB:X06869, SP:P08736, PID:157401, and PID:7915; identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP4-D" /protein_id="NP_829880.1" /db_xref="GI:29839227" /db_xref="GeneID:1217685" /translation="MNDKQNMTNDFIKIVKDVEKDFPELDIKMKVHKEKITFLNSPLE LYHKSISVILNLLNQIQTSLGLFPDSPIVEQMEHSNLKLKKALIMLILSRKDMFSKAE" ORIGIN 1 ttgcttgtgg atctagatcc acaagcaaac ctaactacag gtcttggaat tcagattcgt 61 gacgaacata gtcttaatga gattttgaga agttctaacg atgtcagaca aaccattcac 121 aaaacaaaaa tagaaaatct tgatatcatt ccttcgtcgg ttcttgtgga agattttagg 181 ggcttgaata aagatgtaag cttatcagtc aatcatctat gtttggcgtt gcaaagtatt 241 caaaatcaat acgatgtctg tattttagat actccaccaa gtctagggat ccttactcaa 301 gaagccttcc tagctagcca atacttggtt gtgtgtctaa caccagagcc cttttctata 361 ctcggcttac agaaaataaa agagttctgt tcaacaattg caaacgactt agatgtgttg 421 ggtatagtgt tttcattttg ggatgaaaga aactcaacaa attctatgta cactgatatt 481 atagaaacaa tttacgaagg gaaaatctta tctagtaaag tgcgtagaga tattactgtc 541 agtagatctt tattaaaaga gacctcagta ataaatgctt acccaaactc cagggcgtct 601 caggatattt taaacttaac taaagaaata gaaaacaaac tgttctttaa ccaaaaacta 661 gttcaggaaa ctctgtgagt aaattaatta aagaagcgtc tgcatttttt caaaaaaatc 721 aggaaaacac ggtaaaagaa ttccacaaaa aagaatttgc tatggatgtt ttctcgattt 781 ctctaagcga agatgagaaa gaaaaaatag aaaacttaat tgttagccaa cacggaaatt 841 tcgatgatga atgtagtcat ggattagctt ctattaaact attaacaggg cagatcaagt 901 ctatacaaaa acaacatgtt cttttaatcg gagaaaaaat ttataaagtt agagagattt 961 taagagctat gaattcacct gatacaacat tttcagcgtg gataaatctt gtttttcaca 1021 ccaaatcttc tgcttataat gctctaggat attacgagtt atttattagt cttccagaca 1081 aagatactaa atctttgttt caatcaatac cgtataaaac agcttactta ttagcctcta 1141 gaaaagggtc tgttaaagat aaggttaaag tcttaggcaa aattgaggga atgtcaaata 1201 ctgcagctat agatatctta aataggtttt taccttcctt gagggcttct caaacagaaa 1261 gatcgataaa ctttgaagat aagaacaaag aattatcaga aaaactaatg gaaattctaa 1321 aaacggtgtg ttccggttta gaattatcag agtacaacaa gaatttgcta caacagctct 1381 tcgagaagac tctacaagct aattccagat gctgacctta atcagcagca aataaaaagt 1441 attaatatac ttttttaaga atttaaaccc acaaaacccc gagagaaatt gcaactttag 1501 gtggtagact ttgcaacttt aggtggtaga ctttgcaact ttaggtggta gactttgcaa 1561 ctttaggtgg tagacttttg gttaaaaaaa acttagactg cgcaagactt gtacattaca 1621 aaatatcgag actgagtatg agcggtttga gtcactatca taagagtaga ttatttctaa 1681 caattctaga agcagctaat gtatggttgg ccactttatc tcctattaca agaaagaact 1741 atgcttcggg aatcaagttt ctagtttcta ataatatatt agatggttct atgaagttag 1801 aaagtttaat ctgtttcgat cattgtgatg ttctaaacaa gataaagtct ttaacttata 1861 cttatacagg taagactgtt tctgaagctt caaaacaagc tagagcagct tgttatatct 1921 cttttactaa atttctttat cgattgacca aaggagttgt taagcaggca tgcccttcta 1981 gagatttcgg aaattctaca ttttataaaa ttagagacaa ggttaagaca gagtttattt 2041 ctaagaaaga atggttgtta tttttcgatt ctttaaaaag aattagtttt agagattatc 2101 tgataggtaa attaatcatt caaggcgtta ggaagttaag tgaagttatt tccttaagaa 2161 ctgaggattt gtcttttgct cagaatcagg tcaccttcaa agttaaaaaa cgacaaaaca 2221 gataccaaga agttaaagta agctatccta atttcttaat gcaggaatta cgatcttatc 2281 ttggaaatag agagggttgg gtttttattt ctagagaggg ggagcaggta gcaattaatc 2341 aggtgtatta ttatttcaaa ttggctgaga gtgatattaa ttcacctatt aaagttacac 2401 cccatgtttt aagagctagt gctttagctt atttgaaaaa gatgggtttt gctgatcaag 2461 aaataatgcg gatatcttgt ttatcttcga ctcaaatgct atcagcatac gatacaggta 2521 tgactgacaa tttaacatcg caactgcctt taatatttta atataatttt aattatacag 2581 agaggggggg tgtcgcgaga tttagttaga tatttttatg actaaatcaa cgaaactttt 2641 ttcgatgcgt tttccgatgt tgttgatttg tcataagcgt atatcatttt tgaagacgag 2701 tggcctgtca ctttcataat gtcagaatct gaacaaccca ttttcttgta ctcagttact 2761 gccgtggctc ttaaaacatg gggcgtaact ttaaatggta tacgtgcttt taccccagct 2821 tttgcgaaag ttccagctag ttgttttaaa ccaacacttt ttccagtttt agttataaaa 2881 accagtccca acctatttcc cacatagttt tgcatcagtc tcatgaaccg ttgtggataa 2941 gttataatgg ttgttttgga catacctcta cttttacttt gatcaaaaga tatagtccca 3001 ttttcaaacg aaatcttatc tacggtaaca gataaagctt ctgttacgcg ttttgcccct 3061 tgaagaatag tttgagctat tagccagtct ctgtgattaa ttttttctaa ggcttttaaa 3121 aacataaccc gctcaacctc attcatggca tttgttttga ctaagtctct aattttatag 3181 aatgttttat tagattcttg gtgtgatggt tgagctatag aaattaatcc agacgttgct 3241 cggtttagga attttgttag agatatgtaa catgctgcac gcacttgttt cgttccttct 3301 gaccaaggaa ttatcttcat aggcacttgt tttattgagt ctaagataat gttgtggttt 3361 agcagagcaa attcttgtaa ggatatgttc aaggaaatca aacctatttt ctctaatgct 3421 aaaacagatc ctttataaga tctggctgta tgattattta aagaggataa ccatatgaaa 3481 atagcttccg aaagttgaat atctcttagt ccttcccaaa tacgttcatt tctaatagaa 3541 agaagttcct gatgtgatag gttgctttgg taaactttat tcccaaacac tgtatccaaa 3601 ctcttatgca gtgaattgtc tttacgcaca cacaacctcg tgatataagt tataaatttt 3661 acctgattat ttccataatc aagcaaatta tattaccttt ataaaatcct taaaggaatt 3721 tctggctatc ttatgataaa acaatcagag gaagagagag aactattaga tgttgagttt 3781 tttgttctag gacaagctgt taattatcta gaacatgcgc atacaattgt gcgtaggtta 3841 tcagagaatc attttaaatc agaaaatcat aagaacttat tcatattgat acgtgacatc 3901 ttaagagata gggatacgat ttctatttct ttgatttggg aggagattaa aagaagaaat 3961 ttagataaac gcatggatgt ttcatatcta atacatatgt ctcaaaatgc agacatacct 4021 atagatctag accaccatat tgatttctta cacgaaaaac atgttaacaa ccttcttaaa 4081 gaatttttag actcatcttt tcaagatttc acaagatatc caaacagacg ttcaccgttc 4141 acgcttatag atcaatttaa agagcgtttg gacgacatcc ataaaaaaac ttcataccct 4201 agacgaaaaa atatagggaa aacggtttat gacatttttg catcaggtga tgatgggaag 4261 aacagcgtta tatctcagat acggcatagg tatgactata ggtcaagaca tcaaatagat 4321 tatgttgatg gattgtctac aggatactca tctatagacg agaacagcat tatattatca 4381 aaaggaaact ttgttgttgt cgctgcaaga cctgccatgg ggaaaacagc ttttgctata 4441 gatatagccc ttaatcttgt tctagaacag gaaaaggctg tgggtttcat ttcattagaa 4501 atgagcccaa atcagattgt agaacgggta gtatcaaatt taagcgaaat ttcatgcgag 4561 caattaaaaa gaggcaattt ctctagggat gtcttatcta aaatagaaaa catcggtatg 4621 agactgaaag gaactcattt ttttatatgc gacaataaaa gtacggattt aaatacttta 4681 attgatcaag cgcgagagtt gagagaaaat cagggtatag atgctttatt tatagattac 4741 ttacaactaa taggatcaaa caaaaaggct gagaatcgac agaatgagat agctgaaatc 4801 tcgagacaat taagaaaact agcaggtgag ttacaaattc ctattgtgtg tttgtctcaa 4861 ttgtcaagaa aagtagaaga ccgtggggat aaaagaccaa tgttatctga ccttagagat 4921 agtggtcaga tagaacaaga tgcggatgta atattattct tacatagaaa agattattat 4981 tcacaagaag ctacaaaagg actttcagaa atcatcatcg gtaaaaatag acacggttct 5041 gtattttcaa ccaatttaag atttaattca tctacaggaa aattctcagt tcagaaagaa 5101 gcatggtgaa atcagaaaat cagataatta aaagctcact acatttagag aaccaaaaat 5161 ttggaagaaa acctcagcta tcagaagatc aactcgaact attttccagt atttgtacgg 5221 aatctaaaat cgaagttata ggattagatc tacaaccttc tcattatcat gctttagctg 5281 ctattcaaaa acttctaaca gctacaaact atagaggaaa cctagaagga tcctacttat 5341 ctagagaaac aaatacattt aagtttgaag gcacaatccc aagaattaaa tttaccaagg 5401 cagaatacct agaagcttat ggagtgaaaa aatataagac tgccagaaat aagaatgaat 5461 ttggtggtaa agaagcgcta atagcccttg aagctttgta tcacttggga aacgaacctt 5521 atttgatagt tgctacaaga aagcgttgga acaaaggaga agaggttgtt gatcgttacc 5581 aaacgttttc tcccatctta cgtatctgtg aaggctggga aggtctaact cccaaagaaa 5641 ataaagcttt ggatgaagaa ccttttctta acctgatttc taaaaaacac aaagggttca 5701 tcatagaacc ttgtcctatt attgtagatc aaatcgattc ctattttgtt ttgaagcctg 5761 caaatatgta tcaagaaatc aagctaagat ttccaaatgc ttcaaaattc acatacacat 5821 tcatagattg gatcgtcagc actgcaacaa gaaagaaaat gaatagctcg ggattaaaag 5881 agtggcctga caaaatagaa atagggtttg aaaccctatc ctacacctta aggatgaatc 5941 ggtatattac ttctagaaac tggaaaaaaa tagaatccgc tattaatagg tgtatcgaga 6001 tagctataga gctaaaatgg ttgaataaac atgaaagaat tcaaggtaaa accatttcta 6061 aaaaagaagt gttttatttg aataaaagta aatttcaaca aatttcaaca aataaaacca 6121 tccaaaacac aacaaacaat aattaattgt tgctagtcaa aaagaattaa attaaagctc 6181 aaataaaaag agttttaatt atgggtaatt ctggttttta cttaaacaac aaccaaaact 6241 gtgtattcgc agacaatatt aaagttggtc aaatgcaaaa ccctttgcag gatcaacaac 6301 ttatacttgg aacaacctcc acaccaacag ctgcaaaaat aaccgctaaa gaaggtctca 6361 aagtagactt tgagactgca gatagcaata atgcttctat aaatttatca gtagactctg 6421 atgctctatc aaaactaatc ttagatcaaa tacagaagga tttagtagac gctattatcg 6481 ggaatataac aaatagcttg atacaagaag ttatagataa aataatctct gatccaactc 6541 tagctttaac taaagctttt aagaacttct ctatatcaga caagattcag tgtaatggat 6601 tgttcacaaa aactaatatt ggaactcttc tcggggggac tgagattggt acatttacta 6661 ttacaccaga caatgctgat agtatgttcc taatttctgc cgatatcatc gcctctagaa 6721 tggaagggaa tgttgtccta gctctagtta aggaaggtga ttctgctcct tgcgctgtta 6781 gttatggtta ttcatctggc atacctaatg tttgttcatt aagaacagcc gtaagcaatt 6841 ctggagcaaa tccagttaca ttctcattaa gagtaggcgg aatggaaagt ggtgtagttt 6901 gggttaacgc attagcaaat ggtgattcta tcttagggac aacaacaaca tcgaatatat 6961 cgttcttaga agtcaaacaa caaacaaacg gttaataaaa gttattaaac gacctaatta 7021 aaatatattt ttgttggata tttttttgtg gttttatatg aaaaaatcat atgtctattt 7081 actggagaga ttatgaatga taaacagaat atgactaacg attttatcaa aattgtgaaa 7141 gatgttgaga aagatttccc agaactagat atcaaaatga aggtgcataa ggaaaaaatt 7201 acttttttaa attctccttt agaattgtat cacaaaagta tctccgttat tctaaacctg 7261 cttaatcaaa tacaaacatc tttaggtttg ttccccgact ctcctatagt cgaacaaatg 7321 gaacatagta atttaaagct gaaaaaagct ttgatcatgt tgattttatc aagaaaagat 7381 atgttctcaa aagctgaata aattaacatc tactctaacg ttggagtaag tgtgaaaaca 7441 ctagcatttt gttcttttaa aggcggtact gggaaaacaa ccctgtccct taatattggt 7501 agtaatcttg ctcaaataag taagaaaaag gttttgcttg tggatctaga tccacaagca 7561 aacctaacta caggtcttgg aattcagatt cgtgacgaac atagtcttaa tgagattttg 7621 agaagttcta acgatgtcag acaaaccatt cacaaaacaa aaatagaaaa tcttgatatc 7681 attccttcgt cggttcttgt ggaagatttt aggggcttga ataaagatgt aagcttatca 7741 gtcaatcatc tatgtttggc gttgcaaagt attcaaaatc aatacgatgt ctgtatttta 7801 gatactccac caagtctagg gatccttact caagaagcct tcctagctag ccaatacttg 7861 gttgtgtgtc taacaccaga gcccttttct atactcggct tacagaaaat aaaagagttc 7921 tgttcaacaa ttgcaaacga cttagatgtg ttgggtatag tgtttt //