LOCUS NC_004253 3661 bp DNA circular BCT 04-FEB-2010 DEFINITION Bifidobacterium longum DJO10A plasmid pDOJH10S, complete sequence. ACCESSION NC_004253 VERSION NC_004253.1 GI:23307864 DBLINK Project:18773 KEYWORDS . SOURCE Bifidobacterium longum ORGANISM Bifidobacterium longum Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 3661) AUTHORS Lee,J.H. and O'Sullivan,D.J. TITLE Sequence analysis of two cryptic plasmids from Bifidobacterium longum DJO10A and construction of a shuttle cloning vector JOURNAL Appl. Environ. Microbiol. 72 (1), 527-535 (2006) PUBMED 16391088 REFERENCE 2 (bases 1 to 3661) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3661) AUTHORS Lee,J.H., Halgerson,J.S. and O'Sullivan,D.J. TITLE Direct Submission JOURNAL Submitted (18-AUG-2002) Food Science and Nutrition, University of Minnesota, 262 FScN, 1334 Eckles Ave, St. Paul, MN 55108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF538869. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3661 /organism="Bifidobacterium longum" /mol_type="genomic DNA" /strain="DJO10A" /db_xref="taxon:216816" /plasmid="pDOJH10S" gene join(3626..3661,1..876) /gene="rep" /locus_tag="pDOJH10S_p1" /db_xref="GeneID:1257573" CDS join(3626..3661,1..876) /gene="rep" /locus_tag="pDOJH10S_p1" /note="putative replication protein; RepA; theta replicase; similar to replication protein of Rhodococcus rhodochrous plasmid pRC4 encoded by GenBank Accession Number AB040101" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_694604.1" /db_xref="GI:23307865" /db_xref="GeneID:1257573" /translation="MSEICRIIVAMSTELREQWEQLYLPLRPLCTNDFIEGVYRQPRA KALEGYRYIEANPKTVSDLLVVDIDDANARAMALWEHEGMLPNVIVENPRNGHAHAVW ALAAPFSRTEYARRKPLALAAAVTEGLRRSCDGDKGYSGLMTKNPLHEAWNSELVTDH LYGLDELREALEESGDMPPASWKRTKRRNVVGLGRNCHLFETARTWAYREVRHHWGDS EGLRLAISAEAHEMNAELFPEPLAWSEVEQIAKSIHKWIVTQSRMWRDGPTVYEATFI TVQSARGKKSGKARRETFELFASEEMT" gene complement(1265..2743) /gene="mob" /locus_tag="pDOJH10S_p2" /db_xref="GeneID:1257574" CDS complement(1265..2743) /gene="mob" /locus_tag="pDOJH10S_p2" /note="putative mobilization protein; MobB; similar to mobilization protein of Bifidobacterium longum pKJ36 encoded by GenBank Accession Number AF139129" /codon_start=1 /transl_table=11 /product="Mob" /protein_id="NP_694605.1" /db_xref="GI:23307866" /db_xref="GeneID:1257574" /translation="MAIYSLNISSASSAVAALSYITSMRVRDDARGETYSGFGRRERV AHVATLLPEGAPSGYADPERLFNAAQAAERGTGVAAKKIMVALPRELDEGQRVLAVER FIRENLTAGGYAATYAIHLDREGRNPHAHILVANRRIDPRTGEWARLKQKTTFALDGN GQRIPVIDPKTGVQKVDKRNRKQWKRVTVSENPLGTKAMLLSMRESWADVCNGLLPEG VRIDHRSLEEQGIDRVPTIHEGYASREMEKRGQPSDRMAINREIGASNRDLAEGDAAV DDLRAHQSELRRLLRDMADRAVQAFDRMLESIGHGVDPSDAVEAMRDRDGINLMIPRN AKDSDRPVWHAWLYDRHEWAAIPSHVLREGMRTVGRVRAAIGTALHRWRDAQAARRER IARSTPAQAPRLADVARQAREDAGQPAHQPRPVRKPEQQPEQQRERPVSLAAAAKEAS KQLKREQQQEPEPEPALEWNPWDPADPMNLGMGGSQGYGLGL" gene 3103..3558 /locus_tag="pDOJH10S_p3" /db_xref="GeneID:4271003" CDS 3103..3558 /locus_tag="pDOJH10S_p3" /note="ORFI" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_694606.1" /db_xref="GI:23307867" /db_xref="GeneID:4271003" /translation="MPKSFAQQIEDDENKIKRIREHQRMVRAKQAKQERNARTKRLVE TGAIVEKAHGGAYDDEGRQTFSDGLNGIISVYDPSRGGNVDMRVIDVIDRRIPRLPRS ETTTGTAAAASRTVQATAPQPAHAQPQSFTPNPQRIEHRTGAQQPDRWA" ORIGIN 1 actgaacttc gtgagcagtg ggagcagctt tacctgccgc tgcgcccgct gtgcacgaac 61 gacttcatcg agggcgtgta ccggcagccc agggcgaagg cgctggaggg ctaccggtac 121 atcgaggcga accccaagac cgtcagcgac ctgctcgtgg tcgacatcga cgacgcgaac 181 gcccgcgcga tggccctatg ggagcatgag gggatgctgc ccaacgtgat cgtggagaac 241 ccgagaaacg gccacgcgca cgccgtgtgg gcgctggccg ccccgttcag tcgcaccgaa 301 tacgcgcggc gcaagccgct cgccctggcc gcggcggtca cggaggggct gcgccgctcg 361 tgcgacgggg acaagggata ttcggggctg atgaccaaga acccgctgca cgaggcgtgg 421 aacagcgaac tggtcaccga tcacctgtac gggctggacg aactgcgcga ggcgctggag 481 gagtccgggg acatgccgcc ggcctcgtgg aagcgcacga aacggcgcaa cgtggtcgga 541 ttgggccgca actgccatct gttcgagacg gcgcgcacat gggcgtacag ggaggtgcgc 601 caccactggg gagacagcga ggggctgcgg ctggccatct cggccgaggc gcacgaaatg 661 aacgccgaac tgttccccga gccactggca tggtcggagg tcgagcagat cgccaagagc 721 atccacaagt ggatcgtcac ccaaagccgc atgtggcgcg acggccccac cgtctacgag 781 gcgacattca tcaccgtcca aagcgcccga gggaaaaagt caggcaaggc cagacgagaa 841 acattcgaac tattcgcgag cgaggagatg acgtaatggt tattcaaacg attcgcaaga 901 agcgtcccct gcccgcgcgg caactcgctg aaatgtatga cgttactcca cgcaccatca 961 tgagatgggc agcacagacc cgtgctgatt ggattgatga acaggcggct ggacgcgagg 1021 cgatccgcgc atatcacgat gatgatggac attcatggac tcaaaccgcc aagcatttcc 1081 acctttctct gtccacggtg aaagaacgcg cataccgtgc ccgtaaggag cgtgccgccg 1141 aggccgagga aaaagccaga aatgaggtcc acaagaacga ggtgccgctt ttcgactagg 1201 ctggcgcttg accccggtgc ctcccgtgca attggagcgc ggcaagggcc agggtctttc 1261 acgtctagag gccgaggccg tagccttggc tgccgcccat gccgaggttc atggggtcgg 1321 ccgggtccca cgggttccat tcgagtgccg gctctggttc cggctcctgc tgttgctccc 1381 gtttgagctg tttgctggcc tccttggccg ctgcggcgag gctcacgggc cgctcccgct 1441 gctgctcggg ctgttgctcg ggcttcctga cgggacgggg ctggtgtgcc ggttgtcccg 1501 cgtcctcgcg cgcctgacgg gccacgtcag ccaagcgggg cgcctgggcg ggcgtggaac 1561 gggcgatccg ctcgcgtctg gcggcctgcg cgtcccgcca acgatgcagg gccgtgccga 1621 tggcggcgcg gacgcggccc acagtgcgca ttccctcccg caggacgtgg gagggaatgg 1681 ccgcccactc gtgccggtcg tatagccagg catgccagac gggacggtcg gaatccttgg 1741 cgttccgggg aatcatgagg ttgatgccgt cccggtcccg catcgcctcc accgcgtcgg 1801 acgggtccac gccgtgtccg atgctctcca gcatccggtc gaacgcttgg acggcgcggt 1861 cggccatgtc gcgcaggagc cggcggagtt cggactggtg cgcgcgcagg tcgtccacgg 1921 cagcgtcgcc ttcggccagg tcgcggttcg aggctccgat ctcgcggttg atggccatgc 1981 ggtcggacgg ctggcctcgt ttctccatct cccggctggc gtagccctcg tggatggtgg 2041 gcacgcggtc gatgccctgt tcctcaaggc tgcggtggtc gatgcgcacg ccctcgggca 2101 gcagcccgtt gcacacgtcg gcccagctct cgcgcatgct cagcagcatg gccttggtgc 2161 ccaaagggtt ctcgctgacg gtgacgcgct tccactgctt gcggttgcgc ttgtccacct 2221 tctgcacgcc ggtcttcggg tcgatgaccg ggatgcgctg gccgttcccg tccagcgcga 2281 acgtggtctt ctgcttgagc cgcgcccatt ccccggtccg agggtcgatc ctgcggttgg 2341 cgacgaggat gtgcgcgtgc gggttcctcc cctcgcggtc caaatggatc gcgtaggtcg 2401 ccgcgtaccc gccggcggtc aggttctcac ggatgaaccg ttccaccgcc aggacgcgct 2461 gcccctcgtc cagctcgcgc ggcagggcca ccatgatctt cttcgcggcc acgcccgtgc 2521 cgcgctccgc cgcctgggcg gcgttgaaca ggcgctccgg atccgcgtag ccgctgggcg 2581 cgccctcggg caggagcgtc gccacatggg ccacgcgctc cctgcgcccg aacccggaat 2641 aggtctcgcc cctcgcgtcg tcccgcacgc gcatcgacgt gatgtacgac aacgcggcca 2701 cggcgctgga cgcgctggag atgttcaacg agtagatcgc cacggcgacc tccttccacg 2761 cgtgcgggca cggggattct caaggggccg gcccgaggcc ccttgagccc gccgggaggc 2821 gcccccggca gggcgggaat ccaaagggcg gagccctgtg gccctccccg ggcaggggcg 2881 ggatcgtcaa gggcggagcc cttggccccc tcgggagagc gcactgacac aatgctacct 2941 ccggtagcat taagtgcgcc ctccgccatg cggagggacg ggccgcgacc ggatatgcgg 3001 ggaacgtcca cgacgcgtct tccgtgtcct ccgtcctgcc ttgtgccgtc gattataatc 3061 ctcggataac ggacgatgat tgaaccgatt ggaggaaacg agatgccgaa gagcttcgcg 3121 cagcagatcg aggacgacga gaacaagatc aagcgcatcc gggagcacca gcgcatggtc 3181 agggccaaac aagccaaaca ggagcgcaac gcccgcacca aaaggctcgt ggagaccgga 3241 gcgatagtgg aaaaagcgca cggcggcgcg tacgacgacg aaggacggca gacgttctcg 3301 gatggtctga acggcatcat ctcggtctac gacccgtccc gcggcggcaa cgtggacatg 3361 agagtcatcg acgtaatcga ccggcgcatc cccagattgc caaggtccga aaccacaaca 3421 ggcacggcag cggcggcatc gcgaaccgtg caagccaccg caccacagcc agcccacgcc 3481 caaccgcaaa gcttcacgcc caacccccag cgcatcgaac accggacagg agcacagcag 3541 ccggatcggt gggcctagcc gggacggcgc agccctcgct ccgctgggct gaaatatctg 3601 acttggttcg taacatattt ccgacatgtc ggaaatatgt cgtatcatcg ttgctatgag 3661 t //