LOCUS NC_002182 7501 bp DNA circular BCT 27-JAN-2005 DEFINITION Chlamydia muridarum Nigg plasmid pMoPn, complete sequence. ACCESSION NC_002182 VERSION NC_002182.1 GI:10957566 DBLINK Project:229 KEYWORDS . SOURCE Chlamydia muridarum Nigg ORGANISM Chlamydia muridarum Nigg Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia. REFERENCE 1 (bases 1 to 7501) AUTHORS Read,T.D., Brunham,R., Shen,C., Gill,S.R., Heidelberg,J.F., White,O., Hickey,E.K., Peterson,J., Umayam,L.A., Utterback,T., Berry,K., Bass,S., Linher,K., Weidman,J., Khouri,H., Craven,B., Bowman,C., Dodson,R., Gwinn,M., Nelson,W., DeBoy,R., Kolonay,J., McClarty,G., Salzberg,S.L., Eisen,J. and Fraser,C.M. TITLE Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39 JOURNAL Nucleic Acids Res. 28 (6), 1397-1406 (2000) PUBMED 10684935 REFERENCE 2 (bases 1 to 7501) CONSRTM NCBI Microbial Genomes Annotation Project TITLE Direct Submission JOURNAL Submitted (24-OCT-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7501) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-OCT-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 7501) AUTHORS Read,T.D., Brunham,R., Shen,C., Gill,S.R., Heidelberg,J.F., White,O., Hickey,E.K., Peterson,J., Umayam,L.A., Utterback,T., Berry,K., Bass,S., Linher,K., Weidman,J., Khouri,H., Craven,B., Bowman,C., Dodson,R., Gwinn,M., Nelson,W., DeBoy,R., Kolonay,J., McClarty,G., Salzberg,S.L., Eisen,J. and Fraser,C.M. TITLE Direct Submission JOURNAL Submitted (29-FEB-2000) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AE002162. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7501 /organism="Chlamydia muridarum Nigg" /mol_type="genomic DNA" /strain="MoPn" /db_xref="taxon:243161" /plasmid="pMoPn" gene 98..1015 /locus_tag="TCA01" /db_xref="GeneID:1245522" CDS 98..1015 /locus_tag="TCA01" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence plasmid integrase pGP7-D" /protein_id="NP_038276.1" /db_xref="GI:10957569" /db_xref="GeneID:1245522" /translation="MNSKFYHRSRLFLTFGEASEIWLSTLSPLTRKNYASGIKFLVSL KVLDLTKTLDNAISFDHSESLFKIKSLTIFNGKPVSEASKQARAACYISFTKFLYRLT KGYINPAIPLKDFGNTTFFKIRDRVKTVSISKKEWTVFFEALRLVSYRDYLIGKLIVQ GIRKLDEILSLCMEDLFFASNQISFRIKKRQNKEINIPITFPFSLMKELKDYVGGRNG RVFISEDGSPIATSQVVHNFKIAALRSAMTTKITPRVLRASALIHLKQMGLRDEEIMR VSCLSSKQSLCSYVCSGGNSSVANIPTIL" gene complement(1064..2086) /locus_tag="TCA02" /db_xref="GeneID:1245521" CDS complement(1064..2086) /locus_tag="TCA02" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence plasmid integrase pGP8-D" /protein_id="NP_038277.1" /db_xref="GI:10957568" /db_xref="GeneID:1245521" /translation="MRLGYITRNFVGKGILSLQQEMPLEYIGKSYQEVLKIRQESYWK RMRSFSLFEVIMHWTASLNQHTCRSYRGSFLALEKIGLLSLDMNLQEFSLLNHNLILD AIKKIPSSKASWTEGTKQVRAASYISLTRFLNRMTQGIVSIAQPSKQENSRTFFKTRE IVKTNAMNRLQTASFLKELKKINPRDWLIAQTMLQGGKRSSEVLSLEIDQICFQQATI SFSQLKNRQTEKRIIITYPQKFMHALREYIGPRRGLVFVTSSGKMVGLRQIARTFSQA GLQASIPFKITPHVLRATAVTEYKRLGCSDSDIMKVTGHTTAKMVFAYDKSSREDNAS KKMALI" gene 2154..3509 /locus_tag="TCA03" /db_xref="GeneID:1245519" CDS 2154..3509 /locus_tag="TCA03" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence plasmid helicase pGP1-D" /protein_id="NP_038278.1" /db_xref="GI:10957567" /db_xref="GeneID:1245519" /translation="MKTNSEIENRMQDIEYALLGKALVFEDCTEYILRQLVNYEFKCS RHKNIFIVFKHLKDNALPITVDSAWEELLRRRVKDIDKSYLGIMLHDAMFNDKLRPIS HTVLLDDLSVCSAEENLTNFIFRSFNEYNENPLRRSPFLLLDRIKDRLDRTIAKTFST RSVRGRSVYDIFSQAELGVLARIKKRRAAYSENNDSFYDGLPTGYQDIDSKGVILANG NFVIIAARPSIGKTALAIDIAINIAIHQRRRVGFLSLEMSAGQIVERIISNLTGVSGE KLQRGSLSEEEIFCIEEAGNTIRDSHLYICSDNQYKLNLIANQIRLLKRDDRVDVIFI DYLQLINSSVGENRQNEIADISRTLRGLAAELNIPIVCLSQLSRKVEDRANKVPMLSD LRDSGQIEQDADVILFINRKETSPNCEITVGKNRHGSVFSTVLQFDPKTSKFSAIKKV W" gene 4703..5425 /locus_tag="TCA04" /db_xref="GeneID:1245520" CDS 4703..5425 /locus_tag="TCA04" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP3-D" /protein_id="NP_038279.1" /db_xref="GI:10957573" /db_xref="GeneID:1245520" /translation="MTEPLTDQQIILGTSTTPVAAKITASEGISLTITNNAQANSSVN IGLDAEKAYQLILDKLGDQIFDGITGSIVESAVQDIIDKITSDPSLGLLKAFYNFQIT GKIQCNGLFTSSNVTTLLGGTEIGRFTVTPRSSGSMFLVSADIIASRMEGGVVLALVK EGDTQPCAISYGYSSGVPNLCSLKTCVTNSGSTPTTYSLRIGGLESGVVWVNALSNGN DILGITNTSNVSFLEVIPQKNT" gene 5494..5802 /locus_tag="TCA05" /db_xref="GeneID:1245517" CDS 5494..5802 /locus_tag="TCA05" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP4-D" /protein_id="NP_038280.1" /db_xref="GI:10957572" /db_xref="GeneID:1245517" /translation="MQNKRKLRNDFIKIVKDVEKDFPELDLKIRVNKERVTFLNSPLE LYHKSISLILGLLQQIEKSLELFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" gene 5819..6625 /locus_tag="TCA06" /db_xref="GeneID:1245518" CDS 5819..6625 /locus_tag="TCA06" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence plasmid ParA family protein pGP5-D" /protein_id="NP_038281.1" /db_xref="GI:10957571" /db_xref="GeneID:1245518" /translation="MEYTLQTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKRVLLIDLD PQSNLSSGLGASIEGNHKGLHEVMCASNDLKSIICKTKKTGVDIIPASFLSEQFREFS TNGIPSSNLRLFLDEYCSPLYDVCIVDTPPSLGGLTKEAFIAGDKLIVCLIPEPFSIL GLQKIREFLISIGKPEEEHILGVALSFWDDRSSTNQTYIDIIESIYENKIFSTKIRRD ISLSRSLLKEDSVINVYPTSRAATDILNLTHEISALLNSKHKQDFSQRTL" gene 6622..7362 /locus_tag="TCA07" /db_xref="GeneID:1245523" CDS 6622..7362 /locus_tag="TCA07" /note="identified by sequence similarity; putative" /codon_start=1 /transl_table=11 /product="virulence protein pGP6-D" /protein_id="NP_038282.1" /db_xref="GI:10957570" /db_xref="GeneID:1245523" /translation="MNKLEKEASVFFKKNQESVSQDFKKKVSSIEMFSTSLNSEENQS LDRLFLSETQNLSDEESYQEDVLSVKLLTSQIKAIQKQHVLLLGEKIYNARKILSKSC FSSTTFSSWLDLVFRTKSSAYNALAYYELFISLPSTTLQKEFQSIPYKSAYILAARKG DLKTKVSVIGKVCGMSNASAIRVMDQLLPSSRSKDNQRFFESDLEKNRQLSDLLVELL RIVCSGVFLSPYNENLLQQLFEVYKQKS" ORIGIN 1 gcaactcttg gtggtagact tagtcgggat agacttttgt gtaaaaaaaa aataaactct 61 tgagactctg aatcagagtc atattgttta agaaaagatg aactcaaaat tttaccacag 121 aagtaggcta ttcctaactt ttggagaagc ttcggaaatt tggttgtcaa cgttgtcccc 181 gctaactaga aagaattatg catctggaat taagttttta gtttctctga aggttttgga 241 tttaaccaaa accttagata acgccatttc ctttgatcac agcgagtctt tgtttaagat 301 caaatctcta accattttta atgggaaacc tgtttcagaa gcttctaaac aagccagagc 361 tgcttgttac atatcattta ctaagttttt gtacagattg actaaggggt atattaatcc 421 tgctattcct ttaaaagact ttggtaacac tacatttttt aaaattagag atagagtcaa 481 aacagtttcg atttctaaga aggagtggac ggtatttttt gaagcgcttc gtttggtgag 541 ttatagagac tatctaattg gcaaattaat tgtgcaaggc attaggaagt tagacgagat 601 tttatctttg tgcatggagg atctcttttt tgcatctaat caaatttcgt ttcggattaa 661 aaaaagacaa aataaagaga ttaatatccc tattacgttt cctttcagtt tgatgaaaga 721 attgaaagat tatgttggtg gaagaaatgg gcgtgtgttt atttctgagg atggatctcc 781 cattgcaaca agtcaagtag tgcataattt taaaatagca gcgcttcgga gcgcaatgac 841 aactaaaatc actcccagag tgcttcgagc tagcgcgttg attcatttga aacaaatggg 901 attaagagat gaagaaatta tgcgagtttc ttgtctttcc tcgaagcaaa gtttgtgttc 961 ttatgtttgt tctggcggga actcttctgt cgcaaatata ccaactatat tgtgatataa 1021 ttaaaattat atccatttag ttgccctcaa aagcaactgt agattatatt agggccatct 1081 tctttgaggc attgtcttct ctagaggatt tatcgtacgc aaataccatc tttgcggttg 1141 tgtgtcctgt gaccttcatg atgtcggagt ccgaacaccc taggcgtttg tactctgtca 1201 cagcggttgc tctaagcacg tgaggggtta tcttaaatgg gatagatgct tgcagtcctg 1261 cttgagagaa cgtgcgggca atttgtctta accccaccat ttttccagaa ctagttacga 1321 agaccaaacc tcttcgtggc ccaatgtact ctcttagagc gtgcatgaac ttctgaggat 1381 aagttataat aatcctcttt tctgtctgac gattcttaag ctgggagaaa gagatagttg 1441 cttgttgaaa gcagatctga tcgatctcta agcttaagac ttcagaagaa cgcttacctc 1501 cttgcagcat agtttgggcg atcaaccaat ctctgggatt gatttttttt agttctttca 1561 agaaagaagc tgtttgcaat ctattcattg catttgtttt tacaatttct ctggttttga 1621 aaaatgttcg gctgttttct tgtttagaag gttgtgcgat agaaacaatt ccctgagtca 1681 ttctgtttaa aaatctagtc aaagagatat aactagctgc acgaacttgt ttggtgcctt 1741 ctgtccatga agcttttgac gatggaatct ttttaattgc atccaatatc aagttatgat 1801 tcaaaagaga aaattcttgt agattcatgt ctaaagacaa tagcccaatc ttttctaaag 1861 ctaaaaaaga gcctcggtaa gatctacaag tatgctgatt tagtgatgca gtccaatgca 1921 tgataacttc gaataaagag aagcttctca tgcgtttcca gtaagattct tgtcggattt 1981 ttaatacttc ctgataagac tttccgatat attctaatgg catttcttgc tgcaaagata 2041 aaatcccttt acccacgaaa ttcctcgtga tataacctaa acgcaaatgt cctgattagt 2101 gaaataatca ggttatcatt aggatagcac gcgctgcatt tttttagaaa agcatgaaaa 2161 ctaattctga aatagaaaac cgcatgcaag atattgagta tgcgttacta ggaaaagctt 2221 tggtatttga agactgtaca gagtacattc ttaggcaact tgttaattac gaattcaagt 2281 gctctcgcca taaaaacata ttcattgttt ttaaacactt aaaagacaac gctctgccaa 2341 taactgtaga ttcagcttgg gaagagctgt taagaaggcg tgtcaaagat atagataagt 2401 cttatctcgg tataatgtta catgatgcca tgtttaacga taagctcagg cctatttcgc 2461 atacggttct tttagatgac ttaagtgtat gtagcgctga agaaaattta actaatttca 2521 tttttcgttc gtttaatgaa tataacgaaa atccattgag acgatcacca tttttactat 2581 tagaccgcat aaaagatcgt ctcgacagaa ctatcgcaaa aactttttct actcgtagcg 2641 ttagaggacg atctgtttat gatatctttt ctcaagcaga actcggagta ttagctcgta 2701 taaaaaaaag aagggcggct tattctgaga ataatgattc attttatgac ggcttgccaa 2761 ccggatatca agatattgat agtaaagggg ttattttagc gaacggcaat tttgtgataa 2821 ttgcagctcg gccttctata gggaaaaccg cactcgctat tgatatagct atcaatattg 2881 ctatccatca acgacgtaga gttggttttt tatctcttga aatgagtgca gggcaaatag 2941 ttgaaagaat tatttctaac ttaacagggg tatctggaga gaaattacaa aggggctctc 3001 tatctgaaga agagattttt tgcattgaag aagcaggaaa tactataaga gattctcatc 3061 tttatatttg tagtgacaac caatataagc tcaatttgat agcgaatcaa attcgtttgt 3121 taaaacgaga tgatcgtgtc gacgttattt ttatcgatta cttacaactt attaactcat 3181 ctgttggaga aaatcgacaa aatgaaatag cagatatatc tagaacttta agggggttag 3241 ctgcagagct aaacattcct atagtttgtt tgtctcaatt atccagaaaa gtcgaggata 3301 gagcaaacaa agttcctatg ctgtcagacc taagagatag cggtcaaata gaacaggatg 3361 cagatgtaat tttgttcatc aatagaaagg aaacttctcc taattgtgaa ataacagtgg 3421 gtaaaaatag acatggatcg gttttctcta ctgtattaca gttcgatcca aaaacaagta 3481 agttctctgc tattaaaaaa gtatggtaaa ttatagcaac tgtcacttca ttagaagtcc 3541 tattcatctt gagaatcaga agtttggtag aagaccaggt caattaatca agatatctcc 3601 taagttagct caaaatggct tagtagaagt cataggtctt gactttcttt cttctcatta 3661 ccacgcacta gctgctatcc agagattact tacagctaca aattataagg ggaatacaaa 3721 aggagttgta ttatcaagag aatcaaacag cttccaattc gaaggttgga ttcctcgaat 3781 tagatttaca aaaacagagt tcttagaagc ttacggcgta aaacgataca aaacatctag 3841 aaacaaatac gaatttagtg ggaaagaatc tgaaacagct ttagaggctc tgtatcattt 3901 aggacatcaa cctttcttga tagtggcaac cagaactcga tggaataatg ggacgcctat 3961 tttagatcgt tatcaaaccc tttcgcctat tattagaatt tacgaaggat gggaaggtct 4021 aactgatgaa gaaaatacag aaattgatgt aacaccattc aattcaccat caacacgaaa 4081 gcataaagga ttcattgtag aaccttgtcc catcttggta gatcaaatag actcttattt 4141 cgtagtcaag cctgcgaacg tataccaaga aataaaaatg cgtttcccaa acgcatcaag 4201 atatgcttac acctttattg attggataat tactgcatct gccaaaaaga aaagaaaatt 4261 gaccaaagag aattcttggc cagaaaactt gtctctgaat gttaacgtta aaagccttgc 4321 gtatatttta aggatgaatc gatatatcag cacaagaaac tggaaaaaaa ttgaaatggc 4381 tattgataaa tgtgttgaaa tagctattca actaggttgg ttatctagtc ggaaacgagt 4441 agagttctta gaagcatcta agctgtctaa aaaagagatc ttgtatttaa acaaagaacg 4501 ctttgaagaa ataacaagaa aatcaaaaga acaaatgaat caattcgagc aagaatttaa 4561 ttaaaaaata gcaaaacttg aaactaaaaa ccaaatttat ttaaagctca aaataaaaag 4621 agtttttaaa atgggaaatt ctggttttta tttgcataac actagcaact gtgtatttgc 4681 cgacaatatt aaagttgggc aaatgacaga acctcttaca gatcaacaaa taatacttgg 4741 gacatcgaca actcctgtcg cagcaaaaat aacagcttct gaagggatat ccttaacaat 4801 aacaaacaat gctcaagcta actcttcagt aaatattgga ttagatgctg aaaaagcgta 4861 ccaacttatt ttagataagc ttggcgacca aatctttgat ggaatcacag gatccatagt 4921 tgagagtgct gtacaggaca ttatagataa gattacctcg gacccttctc taggattgtt 4981 gaaggctttc tataacttcc aaatcactgg gaaaattcaa tgtaacggcc tattcacatc 5041 tagcaatgta acaactttat taggaggaac agaaataggt agatttacag taactcctag 5101 aagttctgga agcatgtttt tagtttctgc agatatcatt gcatcaagaa tggaaggtgg 5161 agttgtatta gccttagtaa aagaaggaga tacacaacca tgtgcgatta gctatggcta 5221 ttcttctggt gtgcccaatt tatgtagctt aaaaacctgt gttactaatt ccggatcgac 5281 acccacaact tattcattac gaataggagg attagagagc ggagttgtat gggttaatgc 5341 tctatccaat ggtaatgata ttcttggaat aacaaatact tctaacgttt cttttttgga 5401 ggtgatacct caaaaaaaca cttaaataat tttattggaa ttttcttatc ggttttatat 5461 ttagaagaaa cagttctaat tacgggggtt gttatgcaaa acaaaagaaa actgagaaac 5521 gattttatta aaattgttaa agatgtagaa aaggatttcc ccgagctaga cttgaaaata 5581 cgggtgaata aggaaagggt tactttttta aattcaccct tagaactcta ccacaagagt 5641 atttcattaa ttttaggctt gttacaacaa atagaaaagt ctttggaatt atttccagat 5701 tcccccgttc ttgaaaaatt agaggataac agtttaaagc taaaaaaagc gttgattatg 5761 cttattctgt ctagaaaaga catgttttct aaggcagaat agatgtttta ctctaacgtt 5821 ggagtacact ttgcaaacct tagttttttg ctcttttaag ggtgggacag gaaaaacaac 5881 actttccctg aatgtagggt gtaatttagc tcaattttta ggaaagagag tacttctaat 5941 tgacctagat ccccaatcaa atctctcatc tggattgggg gctagcatcg aaggcaacca 6001 taaaggcctt cacgaagtga tgtgtgcctc aaatgattta aaatcaataa tttgtaaaac 6061 aaaaaaaact ggggtagaca taatccctgc atcatttttg tcagaacaat ttagagaatt 6121 ttctacaaat ggcatcccaa gcagcaattt acggctgttt ttagatgagt attgttcgcc 6181 tttatatgat gtgtgcatag tagatactcc acctagtctt ggtggattaa caaaagaagc 6241 ctttattgca ggagacaaac taatcgtatg tttgattcct gagccatttt ctattctcgg 6301 gctgcagaaa attagagaat ttttaatttc tataggcaaa cctgaggaag aacatattct 6361 tggggtagca ctatcttttt gggatgaccg gagttcgact aatcaaacgt acatagatat 6421 cattgagtca atttacgaaa ataagatttt ttcaacaaaa atacgcagag atatttcttt 6481 gagtcgttcc cttcttaaag aggattctgt gatcaatgta tatccaactt caagagctgc 6541 aacagatatt ctgaatttaa cacacgaaat atctgctctt ttaaattcta aacacaaaca 6601 agacttttcc cagaggacac tgtgaataaa ctggaaaagg aagctagcgt cttttttaaa 6661 aaaaatcagg aatccgtttc tcaagacttt aagaaaaagg tttcttcaat tgagatgttt 6721 tcaacttctt taaattcgga ggaaaaccag agtctggatc ggcttttttt gtctgagact 6781 cagaatttat cagatgaaga atcttaccaa gaagatgttt tgtcagtaaa acttctgaca 6841 agtcaaataa aggctattca aaaacaacac gtgctccttc ttggagagaa gatttacaat 6901 gcgagaaaga tactaagtaa aagttgtttc tcttcaacaa ccttttcatc ttggctagat 6961 ttagttttca ggactaaatc atccgcctat aatgcgttgg cttattatga acttttcata 7021 agtctaccaa gcacaacttt gcagaaagag ttccaatcaa tcccgtataa gtctgcatat 7081 attttagctg ctaggaaagg agacttaaaa acaaaagtct ctgttatagg gaaagtttgt 7141 ggaatgtcca atgcatctgc tatccgggtt atggaccaac ttcttccttc atctagaagt 7201 aaagataatc aaagattttt cgaatctgat ttagagaaaa atcgacagtt atcagatctt 7261 ctcgtagaac tgcttcgcat tgtatgttct ggagttttct tatctcctta taacgaaaac 7321 cttctgcagc agttgtttga agtctataag caaaagagct gatccgccgt cagctcttat 7381 atatatatct attatatata tatattttag ggattcgatt ttacgagagc ttcgcgcaac 7441 tcttggtggt agaccttgca actcttggtg gtagaccttg caactcttgg tggtagacct 7501 t //