LOCUS NC_001773 3444 bp DNA circular BCT 06-MAY-2009 DEFINITION Pyrococcus abyssi GE5 plasmid pGT5, complete sequence. ACCESSION NC_001773 VERSION NC_001773.1 GI:10954552 DBLINK Project:179 KEYWORDS . SOURCE Pyrococcus abyssi GE5 ORGANISM Pyrococcus abyssi GE5 Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus. REFERENCE 1 (bases 1 to 3444) AUTHORS Erauso,G., Marsin,S., Benbouzid-Rollet,N., Baucher,M.F., Barbeyron,T., Zivanovic,Y., Prieur,D. and Forterre,P. TITLE Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile JOURNAL J. Bacteriol. 178 (11), 3232-3237 (1996) PUBMED 8655503 REFERENCE 2 (bases 1 to 3444) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-OCT-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3444) AUTHORS Forterre,P. TITLE Direct Submission JOURNAL Submitted (20-FEB-1996) Patrick Forterre, Institut de Genetique et Microbiologie, Universite Paris-Sud, Orsay 91405, France COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U49503. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3444 /organism="Pyrococcus abyssi GE5" /mol_type="genomic DNA" /strain="GE5" /db_xref="taxon:272844" /plasmid="pGT5" rep_origin 1..114 /note="putative single-stranded origin; sso" repeat_region 22..68 /note="repeat region RI" /rpt_type=inverted gene 103..2067 /locus_tag="pGT5_01" /db_xref="GeneID:3648457" CDS 103..2067 /locus_tag="pGT5_01" /note="ORF1; contains possible alternative initiation site" /codon_start=1 /transl_table=11 /product="replication initiator protein" /protein_id="YP_308887.1" /db_xref="GI:74076684" /db_xref="GeneID:3648457" /translation="MVIYTSKFKNSLLDGLGVGHLSYDDQPILCNEVHPTLTLDTFIS GGSSGSRPRPRWVYLDISTTNEGISEEFSSNTESKSPLLKVCGVSSKSSEGDGSSFIW FDKYRSVISRLEHSGFVEVERTVLKLRKISKELRSINKQLSRLFLDDRERAKLLSRKR KYLDFARALIGSISKSLTLYADRFFVEVPQDYAKLIQKLGFSSDTLLLHLFVNSGVLE VFLDDNSSHKFRIAYISKVHAGKYHPVKGISKGSQEAKRVLRDLLVLSELLEGSLVSY RSGGVETIHHLIPVRHFVLTAPKDVSFSIWASLKKGDSSLFRAFKDAGAKAIKEFLSY LASKEHISGNLLFGFTINVHVTGDKNPFEPHFHIDAIVTFICYDKSSTKWFRLNPLLS ESDLKKLRDIWKNVLLSYFGELLSEDTKSKDFDVWAGDNYYSLPLDVPQVFFELKYAS RKLFVNFVNYFEQSNFDESSVSDWDFVRFVFEYSNRTERYGFLTNIKRYLSMSCSHLV EKRVQELEEFISRIEFDLSVNGNKMSDSLKRALLERLEYLKDELSELKERGFEYLFER ALEKAEELLSNDNLTLERVIHILETLFTALGKSIVNYNFYVELEDVSFREFVDYLYDN HLSDVLVFSDRHRSITIIRLIPPPDGGVPV" rep_origin 266..280 /locus_tag="pGT5_01" /note="putative double-stranded origin; dso; similar to dso seequences from pC194 plasmids" repeat_region 550..607 /note="repeat region RII" repeat_region 2051..2123 /note="repeat region RIII" /rpt_type=inverted gene 2230..3423 /locus_tag="pGT5_02" /db_xref="GeneID:3648458" CDS 2230..3423 /locus_tag="pGT5_02" /note="ORF2" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_308888.1" /db_xref="GI:74076685" /db_xref="GeneID:3648458" /translation="MRLHVHINDKLGELFKKRVHLVYGDRRGALSHAIEEAIILWLLH TDYIVKLQKVNAMSLQTQRIDSDSSHYLPISRLPQTIDEFRAFYNRFGAKATLLVYLL VRGKPLRLYDLFRFHQAIAGVSSDNSTRKVLKRLLRDGLIYRKGKLYYPSPDALLLMW DSIDWSRVRTKRYTGNGVVSKPSKRRVRGVGSQVRRVVRIARSLARRGDTLRAVSLLT HTLLGVRQTGVLLYRKGGLFIVYEHKDRSVRVLFSERIGKLFDDLGLPEGSLYMHMYY RAGRIIHNVFGGYRVARRMFYFLREHGFFYVPASEVDRVGEYRYDPHSGKLIVRIGNW TYEVDADLDAIDSYVENLNSRRTRKSKKKSSSLVSYPRERFGIVRVSKHTKVENDVYY LNYTP" repeat_region 2925..3207 /note="repeat region RIV" ORIGIN 1 attatccttt agaaacgcgt tgggtattgg gggagccccc cttagtgggg agctccccct 61 aaacaccccc aagacaatag gaaaccatag gaggcccctg caatggtgat atacacttca 121 aagtttaaaa actctttgct tgatgggttg ggggttgggc accttagcta tgatgaccag 181 cctattctat gtaatgaggt tcatccaacc cttaccctcg acactttcat ctcgggtggg 241 tcatctggtt ctcgaccccg cccccgttgg gtttatcttg atatatccac aaccaatgaa 301 ggaatttcag aagagttctc ttcaaatact gagagtaaaa gccctctatt gaaggtgtgt 361 ggtgtcagtt ctaagtcatc tgagggtgat ggcagtagtt ttatctggtt tgataagtat 421 cgttcagtca tttcaaggct tgagcactct ggttttgtag aagttgaaag aactgtcctt 481 aagctcagga aaatctccaa agaactccgc tctataaaca agcagttatc gaggcttttc 541 cttgatgata gggagagagc aaagcttctc tctcgcaagc gtaagtatct tgattttgct 601 cgtgctctca taggttctat ttccaagtct cttactcttt atgcggatag gttctttgtt 661 gaggttcccc aagattacgc aaagttaatc caaaagctcg ggttctcaag tgatacgctt 721 cttcttcacc tattcgtgaa tagtggtgtt cttgaggtgt ttcttgatga taatagttct 781 cataagttcc gtattgctta tatttcaaag gttcacgctg gtaagtatca tcctgtgaag 841 ggtatctcca agggttctca ggaggctaag agggttctta gggatttgct tgtgcttagt 901 gaacttcttg agggttctct tgttagctac aggagtgggg gggttgaaac tattcatcac 961 cttattcctg tccgtcattt tgtccttacc gctcctaagg acgttagttt cagtatttgg 1021 gcttctctca agaaggggga tagttcattg tttagggctt tcaaggatgc tggtgctaaa 1081 gccatcaagg agtttttatc ataccttgct tccaaggaac atatctctgg taatctccta 1141 tttggtttta ctatcaatgt tcatgttact ggtgataaga acccctttga gcctcacttc 1201 catattgatg ctatcgttac tttcatttgc tatgataagt cttcaaccaa atggtttagg 1261 cttaatcctc ttctcagcga gagtgatcta aagaaattgc gtgatatttg gaagaacgtg 1321 ttgctgtcct atttcggtga gcttctctct gaggatacta agtcaaagga ttttgatgtt 1381 tgggctggtg ataattatta ctctttgcct cttgatgttc ctcaggtctt cttcgagctc 1441 aagtatgcgt cgaggaagct tttcgtcaat tttgttaatt actttgagca gtctaatttt 1501 gatgagagct ccgtgtccga ttgggatttt gtccgtttcg tcttcgagta tagtaatagg 1561 actgaacgtt atggtttcct cactaacatt aaacgttatc tttctatgtc ttgctctcac 1621 ctcgtagaga agcgtgttca ggagcttgaa gagttcatta gccgtattga gtttgatttg 1681 tctgtgaatg gtaataagat gagtgattca cttaagaggg ctctccttga gcgtcttgag 1741 tatttgaagg atgagctttc agaacttaag gagcgtggtt tcgagtatct ctttgagcgt 1801 gcccttgaga aggcggagga gttgttatct aacgataatc tcactcttga gcgtgttatt 1861 catattttgg aaactttgtt caccgctctt ggtaagtcta ttgtcaatta caatttctat 1921 gttgagcttg aggatgtctc cttcagggag tttgtcgatt atctttatga taatcatctc 1981 tctgatgtcc ttgtctttag tgataggcac cgttctatta ccattattcg gcttattcct 2041 cctcctgatg ggggtgtgcc tgtatgacac cttccaactt tattgtaagt ttgggtgtca 2101 ttttggcacc gcaccccaca ctctctcctc tcccccctcg cctcgccccc cgctggtgcc 2161 tccttggtgc cactacccta cgtttccatc tttttataac tctcgtgcac ttagtaggtg 2221 ggatggtcca tgaggttgca cgtccatatt aatgacaagt tgggtgaact gttcaagaag 2281 cgtgtccacc ttgtgtatgg ggataggcgt ggtgctttgt ctcacgccat tgaggaagct 2341 attatcctgt ggttgctcca tactgactat attgtaaagc ttcagaaggt gaacgctatg 2401 agccttcaaa ctcaaaggat tgacagcgac tcctctcatt atttgcctat ctctcggttg 2461 cctcagacta ttgatgagtt tagggctttc tataatagat ttggtgctaa ggctactttg 2521 cttgtttacc ttcttgttag gggtaagcct ctccgtttgt atgacctttt taggtttcat 2581 caggctattg ctggtgtgtc ttctgataat tctactcgta aggttctcaa gaggttgttg 2641 cgggatggtt taatctatag aaaaggtaag ctctattatc cttcccctga tgctcttttg 2701 cttatgtggg attctattga ttggtcgagg gtgaggacta agcgttatac tggtaatggt 2761 gtggtgtcta agccttctaa acgtagggtt cgtggtgttg gttctcaggt taggcgggtt 2821 gttcgtattg cgaggagttt ggctcggcgt ggggatactt tgagggctgt tagtttgctt 2881 acgcatactc ttttgggtgt taggcagact ggtgtgctcc tttatagaaa aggtggcttg 2941 tttattgtgt atgagcataa ggacaggtct gttagggttc ttttctctga gcggattggt 3001 aagttgtttg atgatttggg gcttcctgag gggtctcttt atatgcatat gtattatcgt 3061 gctggtagga ttattcacaa tgtgtttggg gggtatcggg ttgctcggcg catgttctat 3121 tttctccgtg agcatggttt cttctatgtt cccgcttctg aggttgatag ggttggtgaa 3181 tatcgctatg accctcatag cgggaagctc attgttcgta ttggtaattg gacgtatgag 3241 gttgatgctg atcttgatgc cattgatagt tacgttgaaa atcttaattc gaggaggact 3301 cgtaagtcta agaagaagtc ttcgtctctc gttagttatc ctcgtgagag gtttggtatt 3361 gtgcgtgttt caaagcatac gaaggtggag aacgatgttt actacctcaa ttatactccg 3421 taggagttat aaatccttga gaat //