| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102438
Identifier: 222102438
GI number: 222102438
Start: 35577
End: 36239
Strand: Direct
Name: 222102438
Synonym: Avi_7036
Alternate gene names: NA
Gene position: 35577-36239 (Clockwise)
Preceding gene: 222102437
Following gene: 222102439
Centisome position: 5.63
GC content: 59.13
Gene sequence:
>663_bases ATGGCAGAGATCCATGATGACATGGCTGAAGATACGGCCGCAGAAAAAGCGGCGCATGAGGCCGAGCTACGGACATTGAA GCGGCCGACGATACCAGCGGGAGCCTCGACACCATGGGGCAGGGCGCAGGTTTCGCGGCAATTCGCCGACGGGATCATTC TGCATTCTACCGCCAGTCACGGCGGTTTCCATCTGGCCGAGAAAGCCAATTCGGCCGTCCATGCTCTCTTCCGGAATGAC GGCGAATTTTATGAGGAGGATTGTGAATGGGCGAAGGTCGCCCATGCTTTCCCGCATCTATTCACCGCCTATGAACGTCG GGTGGCCGATCGGACGCTTCGAGACTATTTCCCTGATGCCTACGAGCGCGTCATGGGTGTCATACTGAACGGCAGTCAGT CTCACGTGCGGGACGCCCAAGATTTCGAAAAGCGACATCGCCACGACTGGGTGGTCATCGCAGCCCTGAATTCCGATCAC CAGCCAGGTCTCGTCGAGTGTCTCGCGACTTTGGGTGGGATCCGAGGCGAGGTCGGCGAACGACGGTTTATGGTTCCACG CTCCGACTACGTGATCGGCCGACATGGCTTCGTCATCGATCCAGCCAAGCACGAGCCATATGATGGCCCGTCCAGCTTTG TGACCTGGGCGGCGCGGCGATGA
Upstream 100 bases:
>100_bases CCGCGAGGCCGCCGAATAGCACAAGGCACAAGGATCTGAACCAACGCCGCTGGCTGATGCCGGCGGCGTTTTTGTTTCCA GCAATCAGAAGGAGTTTGTC
Downstream 100 bases:
>100_bases CGGTCGCGCCTAGCGACAGTGACCTTCCGGAAAATCAGGTGATCGATTTCATCGAGCTTTATCGCAGGATCTGGGCACGG CAGCAGGATTGCCGCTCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MAEIHDDMAEDTAAEKAAHEAELRTLKRPTIPAGASTPWGRAQVSRQFADGIILHSTASHGGFHLAEKANSAVHALFRND GEFYEEDCEWAKVAHAFPHLFTAYERRVADRTLRDYFPDAYERVMGVILNGSQSHVRDAQDFEKRHRHDWVVIAALNSDH QPGLVECLATLGGIRGEVGERRFMVPRSDYVIGRHGFVIDPAKHEPYDGPSSFVTWAARR
Sequences:
>Translated_220_residues MAEIHDDMAEDTAAEKAAHEAELRTLKRPTIPAGASTPWGRAQVSRQFADGIILHSTASHGGFHLAEKANSAVHALFRND GEFYEEDCEWAKVAHAFPHLFTAYERRVADRTLRDYFPDAYERVMGVILNGSQSHVRDAQDFEKRHRHDWVVIAALNSDH QPGLVECLATLGGIRGEVGERRFMVPRSDYVIGRHGFVIDPAKHEPYDGPSSFVTWAARR >Mature_219_residues AEIHDDMAEDTAAEKAAHEAELRTLKRPTIPAGASTPWGRAQVSRQFADGIILHSTASHGGFHLAEKANSAVHALFRNDG EFYEEDCEWAKVAHAFPHLFTAYERRVADRTLRDYFPDAYERVMGVILNGSQSHVRDAQDFEKRHRHDWVVIAALNSDHQ PGLVECLATLGGIRGEVGERRFMVPRSDYVIGRHGFVIDPAKHEPYDGPSSFVTWAARR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24715; Mature: 24584
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEIHDDMAEDTAAEKAAHEAELRTLKRPTIPAGASTPWGRAQVSRQFADGIILHSTASH CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCC GGFHLAEKANSAVHALFRNDGEFYEEDCEWAKVAHAFPHLFTAYERRVADRTLRDYFPDA CCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH YERVMGVILNGSQSHVRDAQDFEKRHRHDWVVIAALNSDHQPGLVECLATLGGIRGEVGE HHHHHHHHHCCCHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC RRFMVPRSDYVIGRHGFVIDPAKHEPYDGPSSFVTWAARR CEEECCCCCEEEECCCEEECCCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure AEIHDDMAEDTAAEKAAHEAELRTLKRPTIPAGASTPWGRAQVSRQFADGIILHSTASH CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCC GGFHLAEKANSAVHALFRNDGEFYEEDCEWAKVAHAFPHLFTAYERRVADRTLRDYFPDA CCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH YERVMGVILNGSQSHVRDAQDFEKRHRHDWVVIAALNSDHQPGLVECLATLGGIRGEVGE HHHHHHHHHCCCHHHHCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC RRFMVPRSDYVIGRHGFVIDPAKHEPYDGPSSFVTWAARR CEEECCCCCEEEECCCEEECCCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA