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The map label for this gene is orfB [C]

Identifier: 222102941

GI number: 222102941

Start: 630217

End: 631296

Strand: Reverse

Name: orfB [C]

Synonym: Avi_7700

Alternate gene names: 222102941

Gene position: 631296-630217 (Counterclockwise)

Preceding gene: NA

Following gene: 222102939

Centisome position: 99.92

GC content: 55.56

Gene sequence:

>1080_bases
ATGAAAGCGTCGAAGTTTACGGAAGCGCAAATCGCGTTTGTGTTGAAGCAGGCTCATGATGGAACGCCCATTGGCGAGGT
CTGCCGCAAGGCGGGGATTTCGGACGCTACGTTTTATAACTGGCGCAAAAAAATACACTGGCCTAATGCCGTCAGAGATG
AAGCGCCTGCGGCAGTTGGAAGAGGAAAATGCCAAACTGAAGCGGATCGTCGCCGATCTCTCTTTAGACAAGGCCATCCT
CCAGGATGTGCTGTCAAAAAAGCTCTGAGGCCTGACGGCAAGCGTCATCTTGTCGACAGGATCAAGACGGACTGGAAGGT
TTCGATCCGACGCGCATGCTCCGTCCTGAAGATCGACCGGTCCCTTTATGTCTACAAGTCCAAGCGCGGCGATCAGGCCG
AACTGAAGCTGAAGATCAAGGATATCTGCCAGACGCGGGTACGTTATGGCTATCGTCGTGTGCATGTCTTGATCAGGCGT
GACGGCTGGGTGGTGAATCCGAAGAGAATCTATCGTCTTTACAAGGAGATGGACCTGCAACTGCGCAACAAGGTGCCAAA
ACGGCGCGTCAAAGCAAAGCTGCGATCGCACCGCACCGCAGCCACCCGTTCGAACGACGTCTGGGCCATGGATTTCGTGC
ATGACCAACTGGCCACAGGTCGCAAGATCAGGGTTCTCACGGTTGTCGATACCTTCTCGCGCTTCTCTCCGGCGGTAGAT
GCCCGCTTCAGCTATAAAGGGGAAGACGTCGTGCAGACCCTCGAACGCGTATGCCGGCAGGTCGGTTACCCGGCCACCAT
TCGGATGGACAACGGCAGCGAATTCATCTCTCGTAACCTCGATCTCTGGGCCTATCATAGAGGCGTCGTGCTTGACTTCT
CGCGGCCGGGCAAGCCAACGGACAACAGCTACATCGAGAGCTTTATGTATAGACGGCCCCGCGGGCGCAAGAGGCTTCTT
ACAAGTTCAGGTCATCATTCGGGTGCGTTCATGTATACGGCCTTTGGATGCGACCGATATTATGGTCGCTGGCCCAGATG
GAGTACGCGGATCGAGGCCTCATCAACGGGACGCGCTTGA

Upstream 100 bases:

>100_bases
GTTGAGGACTTGCTGGCTTTGACGTGCCCCCGATAAATTATGCCATTTAGAACTGGAATTTTCCACTTATGATTCCTTTT
GGGAAGAAGAGGAGAATTCG

Downstream 100 bases:

>100_bases
ATGGGCGCTTAAAGCTCTCCGGGCTTGCTCGATCCTCAGCTCCGCTGAGTGACCATCTGTTGCTTCTGCACCTTACGCCA
TCTGGATTTTGGGTTGCTGC

Product: IS3 family transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MKASKFTEAQIAFVLKQAHDGTPIGEVCRKAGISDATFYNWRKKIHWPNAVRDEAPAAVGRGKCQTEADRRRSLFRQGHP
PGCAVKKALRPDGKRHLVDRIKTDWKVSIRRACSVLKIDRSLYVYKSKRGDQAELKLKIKDICQTRVRYGYRRVHVLIRR
DGWVVNPKRIYRLYKEMDLQLRNKVPKRRVKAKLRSHRTAATRSNDVWAMDFVHDQLATGRKIRVLTVVDTFSRFSPAVD
ARFSYKGEDVVQTLERVCRQVGYPATIRMDNGSEFISRNLDLWAYHRGVVLDFSRPGKPTDNSYIESFMYRRPRGRKRLL
TSSGHHSGAFMYTAFGCDRYYGRWPRWSTRIEASSTGRA

Sequences:

>Translated_359_residues
MKASKFTEAQIAFVLKQAHDGTPIGEVCRKAGISDATFYNWRKKIHWPNAVRDEAPAAVGRGKCQTEADRRRSLFRQGHP
PGCAVKKALRPDGKRHLVDRIKTDWKVSIRRACSVLKIDRSLYVYKSKRGDQAELKLKIKDICQTRVRYGYRRVHVLIRR
DGWVVNPKRIYRLYKEMDLQLRNKVPKRRVKAKLRSHRTAATRSNDVWAMDFVHDQLATGRKIRVLTVVDTFSRFSPAVD
ARFSYKGEDVVQTLERVCRQVGYPATIRMDNGSEFISRNLDLWAYHRGVVLDFSRPGKPTDNSYIESFMYRRPRGRKRLL
TSSGHHSGAFMYTAFGCDRYYGRWPRWSTRIEASSTGRA
>Mature_359_residues
MKASKFTEAQIAFVLKQAHDGTPIGEVCRKAGISDATFYNWRKKIHWPNAVRDEAPAAVGRGKCQTEADRRRSLFRQGHP
PGCAVKKALRPDGKRHLVDRIKTDWKVSIRRACSVLKIDRSLYVYKSKRGDQAELKLKIKDICQTRVRYGYRRVHVLIRR
DGWVVNPKRIYRLYKEMDLQLRNKVPKRRVKAKLRSHRTAATRSNDVWAMDFVHDQLATGRKIRVLTVVDTFSRFSPAVD
ARFSYKGEDVVQTLERVCRQVGYPATIRMDNGSEFISRNLDLWAYHRGVVLDFSRPGKPTDNSYIESFMYRRPRGRKRLL
TSSGHHSGAFMYTAFGCDRYYGRWPRWSTRIEASSTGRA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 41701; Mature: 41701

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASKFTEAQIAFVLKQAHDGTPIGEVCRKAGISDATFYNWRKKIHWPNAVRDEAPAAVG
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC
RGKCQTEADRRRSLFRQGHPPGCAVKKALRPDGKRHLVDRIKTDWKVSIRRACSVLKIDR
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
SLYVYKSKRGDQAELKLKIKDICQTRVRYGYRRVHVLIRRDGWVVNPKRIYRLYKEMDLQ
EEEEEECCCCCCHHEEEHHHHHHHHHHHHCCEEEEEEEECCCEEECHHHHHHHHHHHHHH
LRNKVPKRRVKAKLRSHRTAATRSNDVWAMDFVHDQLATGRKIRVLTVVDTFSRFSPAVD
HHHCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCC
ARFSYKGEDVVQTLERVCRQVGYPATIRMDNGSEFISRNLDLWAYHRGVVLDFSRPGKPT
CEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCEEEEECCEEEECCCCCCCC
DNSYIESFMYRRPRGRKRLLTSSGHHSGAFMYTAFGCDRYYGRWPRWSTRIEASSTGRA
CHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECCHHHCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKASKFTEAQIAFVLKQAHDGTPIGEVCRKAGISDATFYNWRKKIHWPNAVRDEAPAAVG
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC
RGKCQTEADRRRSLFRQGHPPGCAVKKALRPDGKRHLVDRIKTDWKVSIRRACSVLKIDR
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
SLYVYKSKRGDQAELKLKIKDICQTRVRYGYRRVHVLIRRDGWVVNPKRIYRLYKEMDLQ
EEEEEECCCCCCHHEEEHHHHHHHHHHHHCCEEEEEEEECCCEEECHHHHHHHHHHHHHH
LRNKVPKRRVKAKLRSHRTAATRSNDVWAMDFVHDQLATGRKIRVLTVVDTFSRFSPAVD
HHHCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCC
ARFSYKGEDVVQTLERVCRQVGYPATIRMDNGSEFISRNLDLWAYHRGVVLDFSRPGKPT
CEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCEEEEECCEEEECCCCCCCC
DNSYIESFMYRRPRGRKRLLTSSGHHSGAFMYTAFGCDRYYGRWPRWSTRIEASSTGRA
CHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECCHHHCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]