| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is 222102939
Identifier: 222102939
GI number: 222102939
Start: 628382
End: 628708
Strand: Reverse
Name: 222102939
Synonym: Avi_7695
Alternate gene names: NA
Gene position: 628708-628382 (Counterclockwise)
Preceding gene: 222102941
Following gene: 222102937
Centisome position: 99.51
GC content: 52.6
Gene sequence:
>327_bases ATGTCGAGCGTTGCGTTTAAGGTACTGTCGACTGTGAACGCCCCTTACGGGACGGACCTTTCGGCTGCGCAACTCGCATC CAAAATTTCCGATTTCGCGAGTGTTGAGAATGTCGATGCTTCGGCATTCTCATTCTATTCCGAAGTGAAAGCAGACCTCC AGCAACAGTTTCTGGATGAGAAGGGCATCGATAAAGAGGTTGCATTCGAGATTGCCCAGACATTCTTGCAGCTTGCCGGA TACCCGCTCGCCCTAGAGCATCGGACCGAAAACCGGTTCCCACTTTTCGGTCCGATGCCTAAGCCAACTCTGATCCCTCA GGCCTGA
Upstream 100 bases:
>100_bases GCTGGCCCAAAACCGGGGTGCACGTCACTGCCTCTGCGGTGTTTCCTGCGTTTTTAACGGTTAGGTCTTATATAGTTGAT TGGAAATGGTGGTGATAACA
Downstream 100 bases:
>100_bases ACGGGCGCCTGCCGGACGTCATAGCGTCAACTATCCTTGGAGCAGACGCGCAATGTCTCTTCAAGGATGTCCAGCGCTTC GGCGAAGGTTTTCTCGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MSSVAFKVLSTVNAPYGTDLSAAQLASKISDFASVENVDASAFSFYSEVKADLQQQFLDEKGIDKEVAFEIAQTFLQLAG YPLALEHRTENRFPLFGPMPKPTLIPQA
Sequences:
>Translated_108_residues MSSVAFKVLSTVNAPYGTDLSAAQLASKISDFASVENVDASAFSFYSEVKADLQQQFLDEKGIDKEVAFEIAQTFLQLAG YPLALEHRTENRFPLFGPMPKPTLIPQA >Mature_107_residues SSVAFKVLSTVNAPYGTDLSAAQLASKISDFASVENVDASAFSFYSEVKADLQQQFLDEKGIDKEVAFEIAQTFLQLAGY PLALEHRTENRFPLFGPMPKPTLIPQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11817; Mature: 11686
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVAFKVLSTVNAPYGTDLSAAQLASKISDFASVENVDASAFSFYSEVKADLQQQFLDE CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KGIDKEVAFEIAQTFLQLAGYPLALEHRTENRFPLFGPMPKPTLIPQA CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSVAFKVLSTVNAPYGTDLSAAQLASKISDFASVENVDASAFSFYSEVKADLQQQFLDE CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KGIDKEVAFEIAQTFLQLAGYPLALEHRTENRFPLFGPMPKPTLIPQA CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA