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The map label for this gene is ycjC [C]

Identifier: 222102937

GI number: 222102937

Start: 626117

End: 626932

Strand: Reverse

Name: ycjC [C]

Synonym: Avi_7693

Alternate gene names: 222102937

Gene position: 626932-626117 (Counterclockwise)

Preceding gene: 222102939

Following gene: 222102932

Centisome position: 99.23

GC content: 59.68

Gene sequence:

>816_bases
ATGCAAAACACCCACCTTAAAATCGCCGAAGCTGCCCGGATGTCCGGTGTTTCGCAATCGACTCTGAGGCTATGGGAACA
GCAGGGGCTGATCGAGCCAGCACGCACGCCATCGGGACAGAGGCTTTACGATTCGGCTGTTCTGGAGCGCATTGCCAGGA
TTGCCTGGTTGCGCAGCGAAAGAGGGCTAAACCCGGCTGCCATTAAAGAGGAACTGGGCCACCCTGAAACGGGCCAGAAG
GGGCTCGACGTGGCTGAACCGGTGACGGACACGGCGGCGATTGGCACGAAGGTTCGGCAAATGCGCAGGCTGTCACACCA
AACCCTGGACGCGGTGGCCCGGGCGACAGGAGCGTCCGTCTCACAGCTTTCGACGTTCGAGCGCACATCTCAGGGTATTT
CCATCACCGTTCTTCACGACTTGGCCAAGCACTTCGGCACCACGGTTGCCGATCTGAACGGGCATCCAACCCAGCAACAG
AGCGCGTCAGTGGTGCGTGACGGCGAGTGGATGACGTGGCCGACCACATCAATGGGCGTTTCCATCCATTCACTTGCCGC
CGGGGCGCGGCAGATGGAATGTCATCGGTTTGATTTGGCACCCGGCGCGTCCAGCGAAGGTGCTTACCGGCACGAGGGCG
AGGAATTTATCTTCGTTCTTGCGGGAGCGCTGCAGATCGTTCTCGACGGGGACCAGTTTTATGATCTTCGGACCGGCGAC
AGTTTTTACTTTGAGAGCAGCCGTCCGCATTCCTGGCGCAATCCGGCGGACGTGCAGGCCACGTTGATCTGGATTAATAC
CCCGCCCACCTTCTAG

Upstream 100 bases:

>100_bases
TGATATCGTGAAAATCTCTACATTTTTTCGGTAGACTTGCAATGCCCATCACACAGCCGCTAGAAAAAAAACAACGCACT
TAAGCCATGCTGGAAATACG

Downstream 100 bases:

>100_bases
TGGGGTCCTTAAGACTCCGACATTTGCTCTCAAGGGTGCTGGAGACGGAGGCAAATGTGGGAATCGGACCACTGGTGCAT
CGATCCAAACTCGGCTGAAG

Product: transcriptional regulator MerR family

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Cupin 2 Domain-Containing Protein; Transcriptional Regulator Protein; Regulatory Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Transcriptional Regulator PuuR; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; MerR Family Regulatory Family; Transcriptional Regulator XRE Family Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Xre Familiy; Transcriptional Regulator Cro/CI Family Protein; Helix-Turn-Helix Protein; Transcriptional Regulator Xre Family; Transcription Regulator; XRE Family-Like Protein

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MQNTHLKIAEAARMSGVSQSTLRLWEQQGLIEPARTPSGQRLYDSAVLERIARIAWLRSERGLNPAAIKEELGHPETGQK
GLDVAEPVTDTAAIGTKVRQMRRLSHQTLDAVARATGASVSQLSTFERTSQGISITVLHDLAKHFGTTVADLNGHPTQQQ
SASVVRDGEWMTWPTTSMGVSIHSLAAGARQMECHRFDLAPGASSEGAYRHEGEEFIFVLAGALQIVLDGDQFYDLRTGD
SFYFESSRPHSWRNPADVQATLIWINTPPTF

Sequences:

>Translated_271_residues
MQNTHLKIAEAARMSGVSQSTLRLWEQQGLIEPARTPSGQRLYDSAVLERIARIAWLRSERGLNPAAIKEELGHPETGQK
GLDVAEPVTDTAAIGTKVRQMRRLSHQTLDAVARATGASVSQLSTFERTSQGISITVLHDLAKHFGTTVADLNGHPTQQQ
SASVVRDGEWMTWPTTSMGVSIHSLAAGARQMECHRFDLAPGASSEGAYRHEGEEFIFVLAGALQIVLDGDQFYDLRTGD
SFYFESSRPHSWRNPADVQATLIWINTPPTF
>Mature_271_residues
MQNTHLKIAEAARMSGVSQSTLRLWEQQGLIEPARTPSGQRLYDSAVLERIARIAWLRSERGLNPAAIKEELGHPETGQK
GLDVAEPVTDTAAIGTKVRQMRRLSHQTLDAVARATGASVSQLSTFERTSQGISITVLHDLAKHFGTTVADLNGHPTQQQ
SASVVRDGEWMTWPTTSMGVSIHSLAAGARQMECHRFDLAPGASSEGAYRHEGEEFIFVLAGALQIVLDGDQFYDLRTGD
SFYFESSRPHSWRNPADVQATLIWINTPPTF

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29792; Mature: 29792

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50943 HTH_CROC1 ; PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNTHLKIAEAARMSGVSQSTLRLWEQQGLIEPARTPSGQRLYDSAVLERIARIAWLRSE
CCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGLNPAAIKEELGHPETGQKGLDVAEPVTDTAAIGTKVRQMRRLSHQTLDAVARATGASV
CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SQLSTFERTSQGISITVLHDLAKHFGTTVADLNGHPTQQQSASVVRDGEWMTWPTTSMGV
HHHHHHHHHCCCCEEEHHHHHHHHHCCEEEECCCCCCCHHHHHHHCCCCEEECCCHHHCC
SIHSLAAGARQMECHRFDLAPGASSEGAYRHEGEEFIFVLAGALQIVLDGDQFYDLRTGD
CHHHHHHCHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCEEEEECCC
SFYFESSRPHSWRNPADVQATLIWINTPPTF
CEEECCCCCCCCCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure
MQNTHLKIAEAARMSGVSQSTLRLWEQQGLIEPARTPSGQRLYDSAVLERIARIAWLRSE
CCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGLNPAAIKEELGHPETGQKGLDVAEPVTDTAAIGTKVRQMRRLSHQTLDAVARATGASV
CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SQLSTFERTSQGISITVLHDLAKHFGTTVADLNGHPTQQQSASVVRDGEWMTWPTTSMGV
HHHHHHHHHCCCCEEEHHHHHHHHHCCEEEECCCCCCCHHHHHHHCCCCEEECCCHHHCC
SIHSLAAGARQMECHRFDLAPGASSEGAYRHEGEEFIFVLAGALQIVLDGDQFYDLRTGD
CHHHHHHCHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCEEEEECCC
SFYFESSRPHSWRNPADVQATLIWINTPPTF
CEEECCCCCCCCCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA