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The map label for this gene is sco1

Identifier: 222102886

GI number: 222102886

Start: 563836

End: 564495

Strand: Direct

Name: sco1

Synonym: Avi_7627

Alternate gene names: NA

Gene position: 563836-564495 (Clockwise)

Preceding gene: 222102885

Following gene: 222102887

Centisome position: 89.25

GC content: 57.27

Gene sequence:

>660_bases
ATGACGCGCAGCCCACTGATAATTCTGGCACTCGCCGTAGCCGGGCTGTTCGTGACATCCTTGATCGGCGTCATGATCTG
GGTTGCTTATGACAGCCCACGGCCGGGTCCGTTTCGCACACAGTTCGAGCTCACCGACGACCGGGGCAATCCGGTCGGCC
CGTCAATTTTTCATGGTTCGCCAGCACTGGTTTATTTTGGCTATACCCATTGCCCGGAAGTCTGCCCGACAACGCTCTAT
GAAGTGGCCGATTGGCTGAAGACGCTGGGATCTGAGGGCAAAGACCTGAAGGCCTATTTCTTCTCGATCGACCCGGAGCG
CGACACGCCGGAGGTCATGCACGGCTATGTCACGGCCTTTACCGACCGCATTACCGGTATCACCGGGAAACCGGAGGAAA
TGAAGAAGGTCGTCGATGGCTGGATGATCCATGCGAGCAAGCTGCCGAGTGAAGATGGCGATTACCACATGAGCCACACG
GTGTCCTTGCTTCTCGTCGGCGCAGACGGTCGGTTGAAGGACATGATTCCCTACGGTCTCGACAAGCAACAGGCCATCAC
GAAAATCCGGGAGCTACTTTCGAACGGTCCTGGCGCAAAGACCGTCGGACAGCAGCTGAGCGACAGCCTCATTCTCCCTT
CACCAGGACAACGATCATGA

Upstream 100 bases:

>100_bases
ACGCAAAGACACTGGTGCTGTTTGCAAGCTTTGAAGGCACGGTCATGGTCGAGGGCGCCGAGGATCACGGCGGGCACGAC
GCTCATAAGGATCATGGAAA

Downstream 100 bases:

>100_bases
ACCGTCGGGACTTCAATGTGCTTTTCACAGCAGCAGGCGCAGGCCTGCTGCTGAACAACGGCATCGCATCGGCTCAAACG
CCACCCCCCTCACCGGATGG

Product: electron transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTRSPLIILALAVAGLFVTSLIGVMIWVAYDSPRPGPFRTQFELTDDRGNPVGPSIFHGSPALVYFGYTHCPEVCPTTLY
EVADWLKTLGSEGKDLKAYFFSIDPERDTPEVMHGYVTAFTDRITGITGKPEEMKKVVDGWMIHASKLPSEDGDYHMSHT
VSLLLVGADGRLKDMIPYGLDKQQAITKIRELLSNGPGAKTVGQQLSDSLILPSPGQRS

Sequences:

>Translated_219_residues
MTRSPLIILALAVAGLFVTSLIGVMIWVAYDSPRPGPFRTQFELTDDRGNPVGPSIFHGSPALVYFGYTHCPEVCPTTLY
EVADWLKTLGSEGKDLKAYFFSIDPERDTPEVMHGYVTAFTDRITGITGKPEEMKKVVDGWMIHASKLPSEDGDYHMSHT
VSLLLVGADGRLKDMIPYGLDKQQAITKIRELLSNGPGAKTVGQQLSDSLILPSPGQRS
>Mature_218_residues
TRSPLIILALAVAGLFVTSLIGVMIWVAYDSPRPGPFRTQFELTDDRGNPVGPSIFHGSPALVYFGYTHCPEVCPTTLYE
VADWLKTLGSEGKDLKAYFFSIDPERDTPEVMHGYVTAFTDRITGITGKPEEMKKVVDGWMIHASKLPSEDGDYHMSHTV
SLLLVGADGRLKDMIPYGLDKQQAITKIRELLSNGPGAKTVGQQLSDSLILPSPGQRS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=148, Percent_Identity=37.1621621621622, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI281182727, Length=156, Percent_Identity=30.1282051282051, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI281182722, Length=156, Percent_Identity=30.1282051282051, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI281182716, Length=156, Percent_Identity=30.1282051282051, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI153791313, Length=156, Percent_Identity=30.1282051282051, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=149, Percent_Identity=28.8590604026846, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=156, Percent_Identity=30.7692307692308, Blast_Score=97, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=153, Percent_Identity=31.3725490196078, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI19920710, Length=201, Percent_Identity=31.3432835820896, Blast_Score=104, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23998; Mature: 23867

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSPLIILALAVAGLFVTSLIGVMIWVAYDSPRPGPFRTQFELTDDRGNPVGPSIFHGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCEECCC
PALVYFGYTHCPEVCPTTLYEVADWLKTLGSEGKDLKAYFFSIDPERDTPEVMHGYVTAF
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
TDRITGITGKPEEMKKVVDGWMIHASKLPSEDGDYHMSHTVSLLLVGADGRLKDMIPYGL
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEHHEEEEEEEECCCCCHHHCCCCCC
DKQQAITKIRELLSNGPGAKTVGQQLSDSLILPSPGQRS
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCEECCCCCCCC
>Mature Secondary Structure 
TRSPLIILALAVAGLFVTSLIGVMIWVAYDSPRPGPFRTQFELTDDRGNPVGPSIFHGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCEECCC
PALVYFGYTHCPEVCPTTLYEVADWLKTLGSEGKDLKAYFFSIDPERDTPEVMHGYVTAF
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
TDRITGITGKPEEMKKVVDGWMIHASKLPSEDGDYHMSHTVSLLLVGADGRLKDMIPYGL
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEHHEEEEEEEECCCCCHHHCCCCCC
DKQQAITKIRELLSNGPGAKTVGQQLSDSLILPSPGQRS
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]