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The map label for this gene is oppC [H]

Identifier: 222102431

GI number: 222102431

Start: 26664

End: 27590

Strand: Reverse

Name: oppC [H]

Synonym: Avi_7028

Alternate gene names: 222102431

Gene position: 27590-26664 (Counterclockwise)

Preceding gene: 222102432

Following gene: 222102430

Centisome position: 4.37

GC content: 54.69

Gene sequence:

>927_bases
ATGATGGTTGATAGAGCGCAGATGGAAAAGCTTGCGACACGAATGAGAGACGAGACCGTCAGAGGCCGCTCCCCATGGGC
CGATGCAAGACGGCGCTTCATGCGCAACAAGGCCGCGATTGCGGGCCTGATTGGTCTCTGTCTTGTCGCCGTTTTTGCCC
TTTTGGGCTCTTATCTCGCCCATTGGTCGAATGATGAGCTGGATTTTTCGGTGATGGGGCAGGTGGTTGATCTTGGCCGT
CCATCATTTGAAAATGGTCACTATTTTGGCACCGACGATCTGGGCCGCGATCTGTTTGCCCGCACCGTACAGGCAACTCA
AGTGTCCATGTCGGTGGCGCTGATTGGCAGCCTGATTGCCGTGGTGGTTGGCACATTGTATGGTGCGATCTCCGGCTACG
CGGGCGGTATTGTCGATAGCATCATGATGCGCACCGTCGATATTTTGATGGCCATTCCCTACATGTTTGTGCTGATTCTG
CTGCTGGTGATGTTTGGCCGTTCCACCACCATTTTGTTCGTGGGCATTGGCTTGATGTCGTGGCTGGATATGAGCCGCAT
TGTGCGCGGTCAAACCCTGAGCATCAAATCCAAGGAATATATCGAGGCAGCACAGGCCACGGGCGTGTCATCCATCAAGA
TCATCTTGCGGCATGTCCTGCCCAACCTGATGGGCGTGGTCACGGTCTATGCCACCTTGCTGGTGCCGATCATGATCATG
ACAGAGAGCTTTATCAGCTTCCTTGGCCTTGGCATTCAAGAGCCGTTGACCAGTTGGGGGGCGATGATTTCTGAAGGGGC
TGGCAGCATGACCCATGGCACCTTGTGGCAACTGGCGGCACCGCTGTTTTTCTTCATTATCACGCTGTTTTCCTTCTATT
TCGTTGGAGACGGTTTGCGCGACGCGCTGGACCCGAAGGATCGCTGA

Upstream 100 bases:

>100_bases
ATGGGCATAACCATTCTCATCGGCGGCCTGACAATTCTGTTCAACCTTGTGGTCGATCTTCTCTATGCGTGGATTGATCC
GAAAATCCGGTACTGATGCG

Downstream 100 bases:

>100_bases
TATGACCCTGCTCAAGATTACCGATCTCTCTGTGGGTTTTGATACGCCAGACGGCCAAGTGAAGGCCGTACAAGGCCTGA
ATCTGACACTCAATCGCGGT

Product: ABC transporter membrane spanning protein (oligopeptide)

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MMVDRAQMEKLATRMRDETVRGRSPWADARRRFMRNKAAIAGLIGLCLVAVFALLGSYLAHWSNDELDFSVMGQVVDLGR
PSFENGHYFGTDDLGRDLFARTVQATQVSMSVALIGSLIAVVVGTLYGAISGYAGGIVDSIMMRTVDILMAIPYMFVLIL
LLVMFGRSTTILFVGIGLMSWLDMSRIVRGQTLSIKSKEYIEAAQATGVSSIKIILRHVLPNLMGVVTVYATLLVPIMIM
TESFISFLGLGIQEPLTSWGAMISEGAGSMTHGTLWQLAAPLFFFIITLFSFYFVGDGLRDALDPKDR

Sequences:

>Translated_308_residues
MMVDRAQMEKLATRMRDETVRGRSPWADARRRFMRNKAAIAGLIGLCLVAVFALLGSYLAHWSNDELDFSVMGQVVDLGR
PSFENGHYFGTDDLGRDLFARTVQATQVSMSVALIGSLIAVVVGTLYGAISGYAGGIVDSIMMRTVDILMAIPYMFVLIL
LLVMFGRSTTILFVGIGLMSWLDMSRIVRGQTLSIKSKEYIEAAQATGVSSIKIILRHVLPNLMGVVTVYATLLVPIMIM
TESFISFLGLGIQEPLTSWGAMISEGAGSMTHGTLWQLAAPLFFFIITLFSFYFVGDGLRDALDPKDR
>Mature_308_residues
MMVDRAQMEKLATRMRDETVRGRSPWADARRRFMRNKAAIAGLIGLCLVAVFALLGSYLAHWSNDELDFSVMGQVVDLGR
PSFENGHYFGTDDLGRDLFARTVQATQVSMSVALIGSLIAVVVGTLYGAISGYAGGIVDSIMMRTVDILMAIPYMFVLIL
LLVMFGRSTTILFVGIGLMSWLDMSRIVRGQTLSIKSKEYIEAAQATGVSSIKIILRHVLPNLMGVVTVYATLLVPIMIM
TESFISFLGLGIQEPLTSWGAMISEGAGSMTHGTLWQLAAPLFFFIITLFSFYFVGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=308, Percent_Identity=54.5454545454545, Blast_Score=306, Evalue=9e-85,
Organism=Escherichia coli, GI1787054, Length=285, Percent_Identity=32.9824561403509, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787760, Length=220, Percent_Identity=35.4545454545455, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789964, Length=289, Percent_Identity=29.757785467128, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789889, Length=235, Percent_Identity=31.4893617021277, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788505, Length=228, Percent_Identity=32.8947368421053, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787549, Length=279, Percent_Identity=27.2401433691756, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33818; Mature: 33818

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCC
>Mature Secondary Structure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HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]