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The map label for this gene is ydcM [C]

Identifier: 203283916

GI number: 203283916

Start: 3234

End: 4373

Strand: Direct

Name: ydcM [C]

Synonym: BDU_15004

Alternate gene names: 203283916

Gene position: 3234-4373 (Clockwise)

Preceding gene: 203283913

Following gene: 203283917

Centisome position: 21.49

GC content: 26.93

Gene sequence:

>1140_bases
ATGAGTGCTAATAAAGCTTATAAATACAGAATATATCCCAATACCAATCAAAAGAAATATTTTTCAAAAGTATTTGGATG
TGTAAGATTTTTGTATAACAAAATGTTAAGTGATAAGAAAGATTATTATGAGAAAAATAAGAAAAGTCTTAGTGTTAATC
CAAGTAATTATAAAAATGAATTTCCATTCTTAAAGGAAGTTGATAGTTTGGCTCTTTGTAGCGCATGGATTGACTTAAAT
TCTGCGTATAGTAATTTTTTTAGGGAAATTAAAAAAGGAAATAGAATGCAAGGATTTCCTAAATATAAAAGTAAGAAAAA
TAGGCAAACTTTTAGAACTAATAATCAAAAAAACTCAATAAGAATAGAAAATGATTATATAAAGCTACCTAAAATAGGAT
TTGTCAAGTTGGCTCTACATAGGAAAATTAAAAGCAATGAAGTTATTAAAAATGTAGTAGTAGAAAAAGATACTGATGAT
AAATATTACATTTCAGTAGCAGTTGAGTGCTTAGATGTTAAAAATAACGATAAAACTAAATGCAATAACAATAAAAAAGA
GATAGTTGGTATTGATATGAGTATGAGGCATTTTTTAGTAAGTAGTGAAGGTGAGAAAATCAATCATCCTAAATATTTAC
TAAAAAATGAACGCAAACTTAAGAAATGCCAAAGAAAACTATCAAAAAAACAAAAGGGCTCTAGGAATAGAGCTAAATCT
AGATTAAGAGTTGCCAAGTTGCATAGGAAAATTTCAAATCAAAGAAAAGATTTTTTACATAAATTATCTTATTATTTTGT
AGCTAATTATAAAAATATAGCAATAGAAAACTTATCAATTAAAGGCATGCAAAAAGGAATGTTTGGCAAAAGTGTTAATG
ATTTGGGATGGCATGAGTTTGTAAGACAATTATCATATAAATCAGAGTGGTCTAAATCTTATTTGCATAAAGTTGATAGA
TATTTTCCATCAAGCAAGCTATGCAACAATTGCGGTATTAAAAATACAACTCTGAAATTAAGTGATACTAGGTGGACTTG
TAGTGGTTGTAATATTTTGCACGATAGAGATATAAATGCAGCTCTAAATCTTAAAGCTTATTATTATAAGGAAATAAAAA
CTAAGGTAGGAACTGCCTGA

Upstream 100 bases:

>100_bases
AAAAATTAAAAAGAATACTCCACCTATAATTTCTATGAAATTTAGGTGGAGATGAATTTGTAACGTAAGTTAAAATATAA
TATAATAATTTTAAAAGATA

Downstream 100 bases:

>100_bases
AGTAAAGCTTGTGGACCATGCTCTAGTGGATGACCGTTCTTATAGAACCTAAAAAGCTATCATGGGATGAAACAAGAAGC
TATTTCTATAATCTTTGATT

Product: transposase IS605 OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSANKAYKYRIYPNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVDSLALCSAWIDLN
SAYSNFFREIKKGNRMQGFPKYKSKKNRQTFRTNNQKNSIRIENDYIKLPKIGFVKLALHRKIKSNEVIKNVVVEKDTDD
KYYISVAVECLDVKNNDKTKCNNNKKEIVGIDMSMRHFLVSSEGEKINHPKYLLKNERKLKKCQRKLSKKQKGSRNRAKS
RLRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFVRQLSYKSEWSKSYLHKVDR
YFPSSKLCNNCGIKNTTLKLSDTRWTCSGCNILHDRDINAALNLKAYYYKEIKTKVGTA

Sequences:

>Translated_379_residues
MSANKAYKYRIYPNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVDSLALCSAWIDLN
SAYSNFFREIKKGNRMQGFPKYKSKKNRQTFRTNNQKNSIRIENDYIKLPKIGFVKLALHRKIKSNEVIKNVVVEKDTDD
KYYISVAVECLDVKNNDKTKCNNNKKEIVGIDMSMRHFLVSSEGEKINHPKYLLKNERKLKKCQRKLSKKQKGSRNRAKS
RLRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFVRQLSYKSEWSKSYLHKVDR
YFPSSKLCNNCGIKNTTLKLSDTRWTCSGCNILHDRDINAALNLKAYYYKEIKTKVGTA
>Mature_378_residues
SANKAYKYRIYPNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVDSLALCSAWIDLNS
AYSNFFREIKKGNRMQGFPKYKSKKNRQTFRTNNQKNSIRIENDYIKLPKIGFVKLALHRKIKSNEVIKNVVVEKDTDDK
YYISVAVECLDVKNNDKTKCNNNKKEIVGIDMSMRHFLVSSEGEKINHPKYLLKNERKLKKCQRKLSKKQKGSRNRAKSR
LRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFVRQLSYKSEWSKSYLHKVDRY
FPSSKLCNNCGIKNTTLKLSDTRWTCSGCNILHDRDINAALNLKAYYYKEIKTKVGTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=364, Percent_Identity=29.1208791208791, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44636; Mature: 44505

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANKAYKYRIYPNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNE
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCCC
FPFLKEVDSLALCSAWIDLNSAYSNFFREIKKGNRMQGFPKYKSKKNRQTFRTNNQKNSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHCCCCCCCE
RIENDYIKLPKIGFVKLALHRKIKSNEVIKNVVVEKDTDDKYYISVAVECLDVKNNDKTK
EEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCC
CNNNKKEIVGIDMSMRHFLVSSEGEKINHPKYLLKNERKLKKCQRKLSKKQKGSRNRAKS
CCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCHHHHHH
RLRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEF
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHCCCCCCCCCCCCHHHH
VRQLSYKSEWSKSYLHKVDRYFPSSKLCNNCGIKNTTLKLSDTRWTCSGCNILHDRDINA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCEEEECCCCEEECCCCCE
ALNLKAYYYKEIKTKVGTA
EEEHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SANKAYKYRIYPNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNE
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCCC
FPFLKEVDSLALCSAWIDLNSAYSNFFREIKKGNRMQGFPKYKSKKNRQTFRTNNQKNSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHCCCCCCCE
RIENDYIKLPKIGFVKLALHRKIKSNEVIKNVVVEKDTDDKYYISVAVECLDVKNNDKTK
EEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCC
CNNNKKEIVGIDMSMRHFLVSSEGEKINHPKYLLKNERKLKKCQRKLSKKQKGSRNRAKS
CCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCHHHHHH
RLRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEF
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHCCCCCCCCCCCCHHHH
VRQLSYKSEWSKSYLHKVDRYFPSSKLCNNCGIKNTTLKLSDTRWTCSGCNILHDRDINA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCEEEECCCCEEECCCCCE
ALNLKAYYYKEIKTKVGTA
EEEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]