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The map label for this gene is psbU [H]

Identifier: 158338153

GI number: 158338153

Start: 5091694

End: 5092113

Strand: Direct

Name: psbU [H]

Synonym: AM1_5046

Alternate gene names: 158338153

Gene position: 5091694-5092113 (Clockwise)

Preceding gene: 158338151

Following gene: 158338155

Centisome position: 78.29

GC content: 43.81

Gene sequence:

>420_bases
ATGCGACTATTCATGCGCCGTTTTGCTGTATTGACTTTAGTTTTAGCCAGCTGCTTGGGTTTGACGGGGTGGTTGCAACC
TGCCAATGCACTGGATATTAATTTAGCTACAACGTACCGAAATCCTGTAGATGCCAAGCTAGAAACAGATTTTGGCCAAA
AAATTGACTTAAATAACACCAATGTTATTGCCTTTAGCCAATATAAGGGTCTATACCCTACCATCGCCGGTAAAGTGGTT
CAGAACGCTCCCTACAGTAGTGTCGAAGAAGTCCTAAATATTGATGGCTTAACGGATGTTCAAAAGAAAATGCTGCAACA
GCATCTGGGTGACTTTACGATTACAGACCCAGATCCAGCCTTAGTTGGGGGGCAAGATCGCTATAACCCAGGGGCTTATT
ATCCTGTTCGTCGCTCATAA

Upstream 100 bases:

>100_bases
CAAGATAGTTTAAATGTTCTTGTTTCCGAATATCTAGATTTTGAGTTGTTCAGTTTTGCTCGCTCGTTTACATCTGTTTA
TTAGGAAGGAATTCATTCTT

Downstream 100 bases:

>100_bases
TCACCAAGGCACGGGTGGGATATGGGGGAATTCCATCCGTTCATTCCATCATGAAAGTCACTCTTAAGACGGTTGATCAC
GGGTAAACCATTATTGCCCG

Product: photosystem II 12 kDa extrinsic protein PsbU

Products: NA

Alternate protein names: PS II complex 12 kDa extrinsic protein; PSII-U [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRLFMRRFAVLTLVLASCLGLTGWLQPANALDINLATTYRNPVDAKLETDFGQKIDLNNTNVIAFSQYKGLYPTIAGKVV
QNAPYSSVEEVLNIDGLTDVQKKMLQQHLGDFTITDPDPALVGGQDRYNPGAYYPVRRS

Sequences:

>Translated_139_residues
MRLFMRRFAVLTLVLASCLGLTGWLQPANALDINLATTYRNPVDAKLETDFGQKIDLNNTNVIAFSQYKGLYPTIAGKVV
QNAPYSSVEEVLNIDGLTDVQKKMLQQHLGDFTITDPDPALVGGQDRYNPGAYYPVRRS
>Mature_139_residues
MRLFMRRFAVLTLVLASCLGLTGWLQPANALDINLATTYRNPVDAKLETDFGQKIDLNNTNVIAFSQYKGLYPTIAGKVV
QNAPYSSVEEVLNIDGLTDVQKKMLQQHLGDFTITDPDPALVGGQDRYNPGAYYPVRRS

Specific function: Stabilizes the structure of photosystem II oxygen- evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010527 [H]

Pfam domain/function: PF06514 PsbU [H]

EC number: NA

Molecular weight: Translated: 15438; Mature: 15438

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFMRRFAVLTLVLASCLGLTGWLQPANALDINLATTYRNPVDAKLETDFGQKIDLNNT
CHHHHHHHHHHHHHHHHHHCHHCCCCCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCC
NVIAFSQYKGLYPTIAGKVVQNAPYSSVEEVLNIDGLTDVQKKMLQQHLGDFTITDPDPA
CEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCC
LVGGQDRYNPGAYYPVRRS
EECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLFMRRFAVLTLVLASCLGLTGWLQPANALDINLATTYRNPVDAKLETDFGQKIDLNNT
CHHHHHHHHHHHHHHHHHHCHHCCCCCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCC
NVIAFSQYKGLYPTIAGKVVQNAPYSSVEEVLNIDGLTDVQKKMLQQHLGDFTITDPDPA
CEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCC
LVGGQDRYNPGAYYPVRRS
EECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]