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The map label for this gene is psbB [H]

Identifier: 158335183

GI number: 158335183

Start: 2016327

End: 2017847

Strand: Direct

Name: psbB [H]

Synonym: AM1_2026

Alternate gene names: 158335183

Gene position: 2016327-2017847 (Clockwise)

Preceding gene: 158335180

Following gene: 158335186

Centisome position: 31.0

GC content: 48.72

Gene sequence:

>1521_bases
ATGGGACTACCCTGGTACCGAGTACACACAGTCGTCCTGAATGATCCAGGACGACTGCTATCTGTGCATTTGATGCACAC
TGCCCTGGTAAGCGGCTGGGCAGGCTCCATGGCACTCTACGAGTTGGCCAAGTACGATCCAAGCGATCCAGTATTAAACC
CCATGTGGCGTCAAGGCACATTCGTTATGCCTGTGATGACTCGCATTGGTGTCACTCACTCTTGGAGTGGCTGGACAGTT
ACTGGTGAGCCTTGGGTTACACAGCCAGGAATTTTAGGCGCACACCTAAACTTCTTTAGTTATGAGGGTGTCATCCTCAT
GCATATCCTGGCTGCAGGTTTGTTTTTCTTAGCTGCCGTTTGGCACTGGATTAACTGGGATTTAGACATCTACTATCCCG
ATGGTTCTTCTGAGCCCGCAAGTGATTGGCCCAAAATTTTCGGTCTTCACCTACTGACATTAGGAATTGTTTGTTTCGGC
TTTGGATCTCTCCACTTAACTGGAATCTTAGGCCCAGGCATGTGGGTTTCGGATCCTTACGGACTCACAGGTCATGTGCA
AGGGGTTAGCCCAGATTGGAGACCATTTGCCTTTGACCCCTACAATCCCACAGGTTTGGTTACTCACCATATCTCTGCAG
GGATTGCCCTCATCATTGGCGGCATTTTCCACACTGTTTCTCGTCCTTCTGAGCGCCTTTATAACGCTCTCAGCATGGGT
AACGTTGAAACCGTACTATCCAGTTCTGTTGCCTTTGTAGCTGCGGCTGCATTCGTAATGGTTGGAACCATGTGGTATGG
AAGTGCAACTACTCCAATCGAATTGTTTGGTCCTACTCGTTATCAGTGGGATAGCGGTTACTTCCAAACTGAAATCCAGC
GCCGTGTGCAGTCTGGTCAAACATGGGATCAAATCCCTGAGAAGCTTGTTTTCTACGATTACATCGGTAATAGCCCTGCT
AAAGGTGGTTTATTCCGCACAGGTGCTATGAACAGTGGTGACGGTATTGCTAGAGCATGGGAAGGTCATCCTACATTTAC
GGATTCTGAAGGTCGTGAGTTGTTCGTGCGACGCATGCCCAACTTCTTCGAAACTTTCCCAGTTGTTCTAACTGACAAAG
ATGGTGTTGTCCGCGCTGACATTCCTTTCCGACGAGCTGAATCTCGATACAGCTTTGAGCAGAAAGGTGTTTCAGTCTCC
TTTGAAGGTGGTACTCTAAACGGTCAAACCTTCACCGATGCTCCTTCTGTTAAGAAGTATGCTCGTAAAGCTCAGCTTGG
TGAACCTTTTGAGTTCGATCGTGAAACGCTTGGTTCTGATGGTGTTTTCCGAACCAGCACTCGTGGTTGGTTTGCATTCA
GCCACTCTTGCTATGCACTACTCTTCTTCTTCGGTCACTGGTGGCATGGCGCTCGTACCATCTTCAAGGATGTGTTCGAG
GGTGTTGATCCTAACCTACCTGAAGAGCAAGTGGAATGGGGTGTCTTCCAGAAAGTTGGTGACACAACCACCCGTGCTTA
G

Upstream 100 bases:

>100_bases
GCTTCATAAACCAATTGTTTGTGAGGTCTTATTAGGATCGGCCCATTAAAAAAATGCTGCAAGTTAAAGTATTGACGTTT
TAAGAGGAGGAGCGTAGTCG

Downstream 100 bases:

>100_bases
TCAGTCCTAAAAGGATGTTGAATTCTAAGGAAGTGCTGATTAGCACTCACTAGGTTCAAAAAGAAGGCTACTGAACGCTT
CTAAGTCCGACAATGATTAG

Product: photosystem II CP47 protein PsbB

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MGLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPVLNPMWRQGTFVMPVMTRIGVTHSWSGWTV
TGEPWVTQPGILGAHLNFFSYEGVILMHILAAGLFFLAAVWHWINWDLDIYYPDGSSEPASDWPKIFGLHLLTLGIVCFG
FGSLHLTGILGPGMWVSDPYGLTGHVQGVSPDWRPFAFDPYNPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMG
NVETVLSSSVAFVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQTWDQIPEKLVFYDYIGNSPA
KGGLFRTGAMNSGDGIARAWEGHPTFTDSEGRELFVRRMPNFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVS
FEGGTLNGQTFTDAPSVKKYARKAQLGEPFEFDRETLGSDGVFRTSTRGWFAFSHSCYALLFFFGHWWHGARTIFKDVFE
GVDPNLPEEQVEWGVFQKVGDTTTRA

Sequences:

>Translated_506_residues
MGLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPVLNPMWRQGTFVMPVMTRIGVTHSWSGWTV
TGEPWVTQPGILGAHLNFFSYEGVILMHILAAGLFFLAAVWHWINWDLDIYYPDGSSEPASDWPKIFGLHLLTLGIVCFG
FGSLHLTGILGPGMWVSDPYGLTGHVQGVSPDWRPFAFDPYNPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMG
NVETVLSSSVAFVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQTWDQIPEKLVFYDYIGNSPA
KGGLFRTGAMNSGDGIARAWEGHPTFTDSEGRELFVRRMPNFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVS
FEGGTLNGQTFTDAPSVKKYARKAQLGEPFEFDRETLGSDGVFRTSTRGWFAFSHSCYALLFFFGHWWHGARTIFKDVFE
GVDPNLPEEQVEWGVFQKVGDTTTRA
>Mature_505_residues
GLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPVLNPMWRQGTFVMPVMTRIGVTHSWSGWTVT
GEPWVTQPGILGAHLNFFSYEGVILMHILAAGLFFLAAVWHWINWDLDIYYPDGSSEPASDWPKIFGLHLLTLGIVCFGF
GSLHLTGILGPGMWVSDPYGLTGHVQGVSPDWRPFAFDPYNPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMGN
VETVLSSSVAFVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQTWDQIPEKLVFYDYIGNSPAK
GGLFRTGAMNSGDGIARAWEGHPTFTDSEGRELFVRRMPNFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVSF
EGGTLNGQTFTDAPSVKKYARKAQLGEPFEFDRETLGSDGVFRTSTRGWFAFSHSCYALLFFFGHWWHGARTIFKDVFEG
VDPNLPEEQVEWGVFQKVGDTTTRA

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56467; Mature: 56335

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPVLNPMWRQGT
CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHCCCC
FVMPVMTRIGVTHSWSGWTVTGEPWVTQPGILGAHLNFFSYEGVILMHILAAGLFFLAAV
CHHHHHHHCCCEECCCCEEEECCCCCCCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHH
WHWINWDLDIYYPDGSSEPASDWPKIFGLHLLTLGIVCFGFGSLHLTGILGPGMWVSDPY
HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
GLTGHVQGVSPDWRPFAFDPYNPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMG
CCCEEECCCCCCCCCCEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
NVETVLSSSVAFVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQ
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHCCC
TWDQIPEKLVFYDYIGNSPAKGGLFRTGAMNSGDGIARAWEGHPTFTDSEGRELFVRRMP
CHHHHHHHEEEEEECCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCC
NFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVSFEGGTLNGQTFTDAPSVKKY
HHHHCCCEEEECCCCEEEECCCHHHHHHHCCHHHCCCEEEECCCCCCCCCCCCCHHHHHH
ARKAQLGEPFEFDRETLGSDGVFRTSTRGWFAFSHSCYALLFFFGHWWHGARTIFKDVFE
HHHHCCCCCCCCCHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVDPNLPEEQVEWGVFQKVGDTTTRA
CCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPVLNPMWRQGT
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHCCCC
FVMPVMTRIGVTHSWSGWTVTGEPWVTQPGILGAHLNFFSYEGVILMHILAAGLFFLAAV
CHHHHHHHCCCEECCCCEEEECCCCCCCCCCEEEECCCEECCCHHHHHHHHHHHHHHHHH
WHWINWDLDIYYPDGSSEPASDWPKIFGLHLLTLGIVCFGFGSLHLTGILGPGMWVSDPY
HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
GLTGHVQGVSPDWRPFAFDPYNPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMG
CCCEEECCCCCCCCCCEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
NVETVLSSSVAFVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQ
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHCCC
TWDQIPEKLVFYDYIGNSPAKGGLFRTGAMNSGDGIARAWEGHPTFTDSEGRELFVRRMP
CHHHHHHHEEEEEECCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCC
NFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVSFEGGTLNGQTFTDAPSVKKY
HHHHCCCEEEECCCCEEEECCCHHHHHHHCCHHHCCCEEEECCCCCCCCCCCCCHHHHHH
ARKAQLGEPFEFDRETLGSDGVFRTSTRGWFAFSHSCYALLFFFGHWWHGARTIFKDVFE
HHHHCCCCCCCCCHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVDPNLPEEQVEWGVFQKVGDTTTRA
CCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1840692 [H]