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The map label for this gene is ccsA

Identifier: 158334881

GI number: 158334881

Start: 1702572

End: 1703573

Strand: Direct

Name: ccsA

Synonym: AM1_1718

Alternate gene names: 158334881

Gene position: 1702572-1703573 (Clockwise)

Preceding gene: 158334880

Following gene: 158334883

Centisome position: 26.18

GC content: 51.9

Gene sequence:

>1002_bases
ATGGATCTGGTCCTACTCCAGAATAAGCTTGATAATCTTTCCTTCGCAGTCTTGTTTGTAACCATGTTGGTCTATTGGGG
AGGACTTGCCTTTCCCAACATTCCATTTTTCCCCACCTTGGGAACCGCCGGAATGGCCATCGCGAATCTATGTATGGCTT
GCTTACTCGGCGCTCGTTGGATGGAAGGGGGCTATTTCCCCATTAGCAACCTGTATGAATCTTTATTCTTCTTAGCCTGG
GGCGTCACCACCATTCATCTCCTGGCAGAATGGCTCAGCCGTAGCCGATTGGTTGGAGCCGCCACTGCTCCTGTGGCCAT
GGGAATTGCTGCCTTTGCGGCTCTGTCCTTACCCGATGAGATGCAATCTTCAGCGCCCTTGGTGCCTGCCCTTAAATCGA
ATTGGCTGATGATGCATGTCAGCGTCATGATGCTGAGCTACTCGGCTTTAATCGTGGGATCCTTATTAGCCATCGCCTTT
TTAATCGTAACCTTTGGTCAACCAGTGGAACTGAAAGGCAGCTCCATTGGCACCGGCAGCTTCCGCAAGCGAGAACCTCA
AGCCCCCGCCGCTTCTACTGCCAGCAACTTGGATGAAGGCTTATCGATGGGTTCAGCTCAAGCCACTGCTGTACTCACTC
CCGTCTCTACTCCTCAAGCGCCTTCTTTTTCTCTGAACCGCATGAGTCTGGCAGAATCCTTAGATAACCTGAGTTACCGC
ATGATTGGTTTGGGATTTCCCCTGCTAACAGTGGGGATTATTGCTGGTGCCGTATGGGCCAATGAAGCCTGGGGCGCACC
CTGGAGCTGGGACCCCAAAGAAACTTGGGCTTTAATTACTTGGCTCGTATTTGCCGCCTATCTCCATGCCCGGATCACTC
GGGGGTGGCAAGGACGACGCCCAGCCTATTTAGCCACAGGCGGATTTTTTGTCGTCTGGGTATGTTATCTAGGAGTCAAC
CTGTTGGGCAAAGGGCTACATTCCTATGGTTGGTTCTTTTAG

Upstream 100 bases:

>100_bases
CGAGACTGAGTTTTAGGTTTCAACAGTCCCTTTTCCATCATTCGATAGGATAATGGATATATATCTACGGCTCAAAGATT
CATAGAAAAGGATAAAAATG

Downstream 100 bases:

>100_bases
TCGTTCCAGTGGATCGGTCAGGATAACCTCAAACTTAGACCAATTGCAGCATCAACGCTCGATACAGCAAGGCAGTCACG
CCATAGCTAATCATCACAAT

Product: cytochrome c-type biogenesis protein CcsA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDLVLLQNKLDNLSFAVLFVTMLVYWGGLAFPNIPFFPTLGTAGMAIANLCMACLLGARWMEGGYFPISNLYESLFFLAW
GVTTIHLLAEWLSRSRLVGAATAPVAMGIAAFAALSLPDEMQSSAPLVPALKSNWLMMHVSVMMLSYSALIVGSLLAIAF
LIVTFGQPVELKGSSIGTGSFRKREPQAPAASTASNLDEGLSMGSAQATAVLTPVSTPQAPSFSLNRMSLAESLDNLSYR
MIGLGFPLLTVGIIAGAVWANEAWGAPWSWDPKETWALITWLVFAAYLHARITRGWQGRRPAYLATGGFFVVWVCYLGVN
LLGKGLHSYGWFF

Sequences:

>Translated_333_residues
MDLVLLQNKLDNLSFAVLFVTMLVYWGGLAFPNIPFFPTLGTAGMAIANLCMACLLGARWMEGGYFPISNLYESLFFLAW
GVTTIHLLAEWLSRSRLVGAATAPVAMGIAAFAALSLPDEMQSSAPLVPALKSNWLMMHVSVMMLSYSALIVGSLLAIAF
LIVTFGQPVELKGSSIGTGSFRKREPQAPAASTASNLDEGLSMGSAQATAVLTPVSTPQAPSFSLNRMSLAESLDNLSYR
MIGLGFPLLTVGIIAGAVWANEAWGAPWSWDPKETWALITWLVFAAYLHARITRGWQGRRPAYLATGGFFVVWVCYLGVN
LLGKGLHSYGWFF
>Mature_333_residues
MDLVLLQNKLDNLSFAVLFVTMLVYWGGLAFPNIPFFPTLGTAGMAIANLCMACLLGARWMEGGYFPISNLYESLFFLAW
GVTTIHLLAEWLSRSRLVGAATAPVAMGIAAFAALSLPDEMQSSAPLVPALKSNWLMMHVSVMMLSYSALIVGSLLAIAF
LIVTFGQPVELKGSSIGTGSFRKREPQAPAASTASNLDEGLSMGSAQATAVLTPVSTPQAPSFSLNRMSLAESLDNLSYR
MIGLGFPLLTVGIIAGAVWANEAWGAPWSWDPKETWALITWLVFAAYLHARITRGWQGRRPAYLATGGFFVVWVCYLGVN
LLGKGLHSYGWFF

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCSA_ACAM1 (B0CBA0)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001516053.1
- GeneID:   5680534
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_1718
- HOGENOM:   HBG733666
- OMA:   WALICWL
- ProtClustDB:   CLSK892624
- BioCyc:   AMAR329726:AM1_1718-MONOMER
- HAMAP:   MF_01391
- InterPro:   IPR002541
- InterPro:   IPR017562
- TIGRFAMs:   TIGR03144

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 36005; Mature: 36005

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x40a16280)-; HASH(0x409fcc90)-; HASH(0xdd727a0)-; HASH(0xd3b20e8)-; HASH(0xd3b20dc)-; HASH(0xeb798cc)-; HASH(0xeb8f284)-; HASH(0xccd9d60)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVLLQNKLDNLSFAVLFVTMLVYWGGLAFPNIPFFPTLGTAGMAIANLCMACLLGARW
CCEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
MEGGYFPISNLYESLFFLAWGVTTIHLLAEWLSRSRLVGAATAPVAMGIAAFAALSLPDE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
MQSSAPLVPALKSNWLMMHVSVMMLSYSALIVGSLLAIAFLIVTFGQPVELKGSSIGTGS
HHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
FRKREPQAPAASTASNLDEGLSMGSAQATAVLTPVSTPQAPSFSLNRMSLAESLDNLSYR
CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
MIGLGFPLLTVGIIAGAVWANEAWGAPWSWDPKETWALITWLVFAAYLHARITRGWQGRR
HHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAYLATGGFFVVWVCYLGVNLLGKGLHSYGWFF
CEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MDLVLLQNKLDNLSFAVLFVTMLVYWGGLAFPNIPFFPTLGTAGMAIANLCMACLLGARW
CCEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
MEGGYFPISNLYESLFFLAWGVTTIHLLAEWLSRSRLVGAATAPVAMGIAAFAALSLPDE
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
MQSSAPLVPALKSNWLMMHVSVMMLSYSALIVGSLLAIAFLIVTFGQPVELKGSSIGTGS
HHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
FRKREPQAPAASTASNLDEGLSMGSAQATAVLTPVSTPQAPSFSLNRMSLAESLDNLSYR
CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
MIGLGFPLLTVGIIAGAVWANEAWGAPWSWDPKETWALITWLVFAAYLHARITRGWQGRR
HHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAYLATGGFFVVWVCYLGVNLLGKGLHSYGWFF
CEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA