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The map label for this gene is yifB [H]

Identifier: 153937157

GI number: 153937157

Start: 2417385

End: 2418908

Strand: Direct

Name: yifB [H]

Synonym: CLC_2287

Alternate gene names: 153937157

Gene position: 2417385-2418908 (Clockwise)

Preceding gene: 153934773

Following gene: 153934623

Centisome position: 64.28

GC content: 30.58

Gene sequence:

>1524_bases
GTGACTAGTAAAGTTATTACAGCTACCTTAAATGGAGCCTGCTGTAATTTAATATCTGTAGAAGTAGATATAAGTCATGG
TCTTCCTGCCTTTAATATAGTAGGTCTTGCAGATACCTCCGTTAAAGAATCTAAAGAAAGGGTAAAATCCGCAATAACAA
ACTCAGGTTATGAGTTTCCTATAAGCAAAATAACTGTAAATCTATCCCCTGCTGATATAAAAAAAGAAGGTTCTTCCTTT
GATTTACCCATAGCTCTTGCTATATTAGCTGCTACAGAGCAAATCAATGGCGAATCCTTAAAAAACTATATAATTTTAGG
AGAACTTTCACTGTTTGGAGAAATAAATAAAATAAGGGGTGCTCTTCCTATAGCCTTAGAAGCTTTGGACAACAATTATC
TCAACTTTATAGTTCCTATAAGTAATGCTAACGAATGCGCTATGCTAGATAAAATAAATGTTTATCCTTTTTCCTCCTTA
AAAGAAGTTATTCATTTCATTTGCTACAAAGATTTGCTTCCATATAAGATCGATATAAAAAATATGGCTCCTAATAAAGT
AAAAGAAAAAGATTTTTCCGAAATAACTGGTCAAGAAAGCTCAAAAAGAGCTTTAGAAATAGCTGCGGCGGGAGCTCACA
ATGTCATAATGTCCGGTCCTCCTGGTTGTGGTAAAACTATGCTAGCTGAAAGATTTCCTTCTATAATTCCTGACTTAAAT
TATGAAGAATCTTTGGAAGTTACTAAAATATATAGTATTGCTGGCAAATTAGATAAAAATGGTTCATTAATAACCAAAAG
ACCTTTTAGAAATCCTCATAGTACTTCTTCTCAGGCAGCTTTAACAGGAGGTGGAATGAATTTAATTCCAGGGGAAATCT
CTCTAGCACACAACGGAGTTTTATTTTTAGATGAAATATTAGAATTTAAGAAATCAGTATTGGAAGCTTTAAGGCAACCT
TTAGAGGATAAAAAAATAACTATAAGTAGGTTTAATGGTGCTGCTACTTATAACTCAAATTTTATATTACTCGGAACTTT
AAATCCCTGTCCCTGTGGCTTCTTAGGTTCTGAAAAACCTTGTAGTTGTAGTGATTATGAAATTAAAAGATACTTAAATA
AACTTTCTGGACCTCTTTTGGATAGAATTGATATTTTTACTTTTGTTCCTTCTTTATCCTATACTGAAATTAAAAGTAAT
AACAATTCAGAATCCTCTGATATAATAAAAGAAAGAGTAAATACAGCACGAAAAATACAAGAGAAAAGATTTCTTAATGA
AGGAATTTATACTAACTCCCAAATGAAAAGAATTCATTTAAAAAAATACTGTAGTTTAAATATAGAAGCTTCTAATATAT
TAGAGAAAATATATGACAGGTTTAATTTAAGTATTCGATCCTATGGCCGTATACTTAAAGTTGCTAGAACTATAGCTGAT
TTAAACAATAATGAAAAAATTCAAAAGGAAGATATTATAGAAGCTTTGCAATATAGAAAATTTGTAAATAATGATATACT
CTAA

Upstream 100 bases:

>100_bases
TATATTTAAATAAATAGTCAATAATCTATATAATATAAAGATATATTCTTTTAAATTATGTATGAAATAAAATATATATT
AAATTTATGAGGTGATTTTT

Downstream 100 bases:

>100_bases
TGAAAGGTGATATTTATGCACTACTGTAATAAGGATATTGGCTCTTTTGGTGAAACTATAGCTGTTGACTATATTAAAAA
TTGTGGATATATTATATTAG

Product: Mg chelatase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MTSKVITATLNGACCNLISVEVDISHGLPAFNIVGLADTSVKESKERVKSAITNSGYEFPISKITVNLSPADIKKEGSSF
DLPIALAILAATEQINGESLKNYIILGELSLFGEINKIRGALPIALEALDNNYLNFIVPISNANECAMLDKINVYPFSSL
KEVIHFICYKDLLPYKIDIKNMAPNKVKEKDFSEITGQESSKRALEIAAAGAHNVIMSGPPGCGKTMLAERFPSIIPDLN
YEESLEVTKIYSIAGKLDKNGSLITKRPFRNPHSTSSQAALTGGGMNLIPGEISLAHNGVLFLDEILEFKKSVLEALRQP
LEDKKITISRFNGAATYNSNFILLGTLNPCPCGFLGSEKPCSCSDYEIKRYLNKLSGPLLDRIDIFTFVPSLSYTEIKSN
NNSESSDIIKERVNTARKIQEKRFLNEGIYTNSQMKRIHLKKYCSLNIEASNILEKIYDRFNLSIRSYGRILKVARTIAD
LNNNEKIQKEDIIEALQYRKFVNNDIL

Sequences:

>Translated_507_residues
MTSKVITATLNGACCNLISVEVDISHGLPAFNIVGLADTSVKESKERVKSAITNSGYEFPISKITVNLSPADIKKEGSSF
DLPIALAILAATEQINGESLKNYIILGELSLFGEINKIRGALPIALEALDNNYLNFIVPISNANECAMLDKINVYPFSSL
KEVIHFICYKDLLPYKIDIKNMAPNKVKEKDFSEITGQESSKRALEIAAAGAHNVIMSGPPGCGKTMLAERFPSIIPDLN
YEESLEVTKIYSIAGKLDKNGSLITKRPFRNPHSTSSQAALTGGGMNLIPGEISLAHNGVLFLDEILEFKKSVLEALRQP
LEDKKITISRFNGAATYNSNFILLGTLNPCPCGFLGSEKPCSCSDYEIKRYLNKLSGPLLDRIDIFTFVPSLSYTEIKSN
NNSESSDIIKERVNTARKIQEKRFLNEGIYTNSQMKRIHLKKYCSLNIEASNILEKIYDRFNLSIRSYGRILKVARTIAD
LNNNEKIQKEDIIEALQYRKFVNNDIL
>Mature_506_residues
TSKVITATLNGACCNLISVEVDISHGLPAFNIVGLADTSVKESKERVKSAITNSGYEFPISKITVNLSPADIKKEGSSFD
LPIALAILAATEQINGESLKNYIILGELSLFGEINKIRGALPIALEALDNNYLNFIVPISNANECAMLDKINVYPFSSLK
EVIHFICYKDLLPYKIDIKNMAPNKVKEKDFSEITGQESSKRALEIAAAGAHNVIMSGPPGCGKTMLAERFPSIIPDLNY
EESLEVTKIYSIAGKLDKNGSLITKRPFRNPHSTSSQAALTGGGMNLIPGEISLAHNGVLFLDEILEFKKSVLEALRQPL
EDKKITISRFNGAATYNSNFILLGTLNPCPCGFLGSEKPCSCSDYEIKRYLNKLSGPLLDRIDIFTFVPSLSYTEIKSNN
NSESSDIIKERVNTARKIQEKRFLNEGIYTNSQMKRIHLKKYCSLNIEASNILEKIYDRFNLSIRSYGRILKVARTIADL
NNNEKIQKEDIIEALQYRKFVNNDIL

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=492, Percent_Identity=42.6829268292683, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 56254; Mature: 56123

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKVITATLNGACCNLISVEVDISHGLPAFNIVGLADTSVKESKERVKSAITNSGYEFP
CCCCEEEEECCCCEEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCE
ISKITVNLSPADIKKEGSSFDLPIALAILAATEQINGESLKNYIILGELSLFGEINKIRG
EEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCC
ALPIALEALDNNYLNFIVPISNANECAMLDKINVYPFSSLKEVIHFICYKDLLPYKIDIK
CCHHHHEECCCCCEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
NMAPNKVKEKDFSEITGQESSKRALEIAAAGAHNVIMSGPPGCGKTMLAERFPSIIPDLN
CCCCCCCCHHHHHHHCCCCCCHHEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCCCC
YEESLEVTKIYSIAGKLDKNGSLITKRPFRNPHSTSSQAALTGGGMNLIPGEISLAHNGV
CCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCCCEECCCCEEECCCCC
LFLDEILEFKKSVLEALRQPLEDKKITISRFNGAATYNSNFILLGTLNPCPCGFLGSEKP
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEEECCCCCCCCCCCCCCC
CSCSDYEIKRYLNKLSGPLLDRIDIFTFVPSLSYTEIKSNNNSESSDIIKERVNTARKIQ
CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
EKRFLNEGIYTNSQMKRIHLKKYCSLNIEASNILEKIYDRFNLSIRSYGRILKVARTIAD
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LNNNEKIQKEDIIEALQYRKFVNNDIL
CCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSKVITATLNGACCNLISVEVDISHGLPAFNIVGLADTSVKESKERVKSAITNSGYEFP
CCCEEEEECCCCEEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCE
ISKITVNLSPADIKKEGSSFDLPIALAILAATEQINGESLKNYIILGELSLFGEINKIRG
EEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCC
ALPIALEALDNNYLNFIVPISNANECAMLDKINVYPFSSLKEVIHFICYKDLLPYKIDIK
CCHHHHEECCCCCEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
NMAPNKVKEKDFSEITGQESSKRALEIAAAGAHNVIMSGPPGCGKTMLAERFPSIIPDLN
CCCCCCCCHHHHHHHCCCCCCHHEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCCCC
YEESLEVTKIYSIAGKLDKNGSLITKRPFRNPHSTSSQAALTGGGMNLIPGEISLAHNGV
CCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCCCEECCCCEEECCCCC
LFLDEILEFKKSVLEALRQPLEDKKITISRFNGAATYNSNFILLGTLNPCPCGFLGSEKP
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEEECCCCCCCCCCCCCCC
CSCSDYEIKRYLNKLSGPLLDRIDIFTFVPSLSYTEIKSNNNSESSDIIKERVNTARKIQ
CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
EKRFLNEGIYTNSQMKRIHLKKYCSLNIEASNILEKIYDRFNLSIRSYGRILKVARTIAD
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LNNNEKIQKEDIIEALQYRKFVNNDIL
CCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]