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The map label for this gene is rbgA [H]

Identifier: 153936572

GI number: 153936572

Start: 2420484

End: 2421362

Strand: Reverse

Name: rbgA [H]

Synonym: CLC_2290

Alternate gene names: 153936572

Gene position: 2421362-2420484 (Counterclockwise)

Preceding gene: 153937270

Following gene: 153935357

Centisome position: 64.39

GC content: 30.38

Gene sequence:

>879_bases
ATGAACATAAATTGGTTTCCAGGTCATATGGCAAAAACTCGTAGACAAATAAAGGAAAGCTTAAAAATGGTAGATGCCAT
AATAGAAATAAGAGATGCTAGAATAGTAAGCTCTAGTAAAAATCCAGATATAGAAGATATATGTGGCAATAAACCACGAA
TAATTCTTTTAAATAAAAAGGATTTAGCAGAGGATAAAGTAACTAAGAAATGGATCGATTCCTTATCACAGGATAACATA
AAAGTTTTAGCAGTAAATTCTGTAACAGGAGAGGGATTAAATAAAATAAAACCTACATTAAATGAATTGTTAAAAGAAAA
ACATGAAAGAATGAAGAATAAAGGCTTAGTTAAAATAGTAGATAGAGTTATGGTGGTAGGTATACCTAATGTAGGAAAAT
CCTCTTTTATAAATAAAATGGCTAAAAACTCTATAGCTAAAGTAGGAGATAGGCCAGGAGTTACAAAGAGCAAACAATGG
ATAAAAACTAAGATAGATATAGAGCTTATGGATACTCCGGGAGTTTTGTGGCCAAAACTAGATAGTGAGATTGTACAATT
AAATTTAGCCTTTACAGGAGCTATTAAAGATGAAATTATGGATATAGAAACTCTAGCTTTAAGGTTAGTAGAAAGGCTTC
AGGTTAAATATCCAGAGAGATTGATGAAAAGATATAAATTAGAAGCATTAGAAGAAAATCCTTTAGATAATTTGGATAAT
ATAGGCAGAAAAAGAGGGGCTTTAATTTCTAAGGGAGAGATAGACTATAATAGAATATCTGTAATTATTTTGGATGAATT
TAGAGGTGGAAAATTAGGTGCCATTTCTTTAGAAGACCCAGAGGATATTACAAAAGATAACATACAAATAGAGGAATAG

Upstream 100 bases:

>100_bases
TTATATAGATACTGTGATTTTATGACAGTCGTTTTCTAAATAGTGGGAGAAATGTTAGGGCATATAGACATGAGATAAAA
AATAGAGGGAGGATATAAAA

Downstream 100 bases:

>100_bases
GTAAGCTCTCTTAAAGATTAATAATATTATATAATTGAAGGATACATTAGAGCAATGTATCCAATTTTATAAGTATAGAA
ATATTAATATACTAAATCTA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWIDSLSQDNI
KVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQW
IKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE

Sequences:

>Translated_292_residues
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWIDSLSQDNI
KVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQW
IKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE
>Mature_292_residues
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWIDSLSQDNI
KVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQW
IKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=294, Percent_Identity=34.0136054421769, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI7019419, Length=256, Percent_Identity=29.6875, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI296317324, Length=235, Percent_Identity=31.9148936170213, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI9506611, Length=235, Percent_Identity=31.9148936170213, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=32.4074074074074, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI32563985, Length=227, Percent_Identity=29.5154185022026, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71990926, Length=223, Percent_Identity=29.5964125560538, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI32563983, Length=223, Percent_Identity=29.5964125560538, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17534827, Length=292, Percent_Identity=27.3972602739726, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25143545, Length=280, Percent_Identity=26.4285714285714, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115535155, Length=280, Percent_Identity=26.0714285714286, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=273, Percent_Identity=27.4725274725275, Blast_Score=86, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6320842, Length=294, Percent_Identity=28.2312925170068, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=225, Percent_Identity=25.7777777777778, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85815858, Length=309, Percent_Identity=29.7734627831715, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI28572990, Length=282, Percent_Identity=26.9503546099291, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI19922460, Length=277, Percent_Identity=27.7978339350181, Blast_Score=77, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33115; Mature: 33115

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCCCCEEEEECCC
DLAEDKVTKKWIDSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIV
CCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
DRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKL
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCC
DSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE
HHHHHCCEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCCCEECC
>Mature Secondary Structure
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCCCCEEEEECCC
DLAEDKVTKKWIDSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIV
CCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
DRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKL
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCC
DSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE
HHHHHCCEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]