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The map label for this gene is ymdB [C]

Identifier: 153935842

GI number: 153935842

Start: 2308957

End: 2309499

Strand: Reverse

Name: ymdB [C]

Synonym: CLC_2170

Alternate gene names: 153935842

Gene position: 2309499-2308957 (Counterclockwise)

Preceding gene: 153936923

Following gene: 153936418

Centisome position: 61.41

GC content: 31.12

Gene sequence:

>543_bases
TTGTCTATATCATATATAAATAAAATAAAGATAATAAAGGGTGATATTACAAAAGAAAATGTAAATGCTATTGTTAATGC
TGCAAATAGTAGCTTGCTTGGGGGTGGTGGTGTAGATGGAGCTATTCATAGAGCAGGTGGGAATAAGATACTTGAGGAAT
GTAAAAGTATTGTAAGTAAAATAGGTCAATTAAAGACAGGAGAAGCAGTAATAACCTCTGGAGGGAATCTTAAGGCTAAA
TATGTTATTCATACTGTAGGACCTATATGGCATGGAGGAAAGAGTAATGAAGAAACTCTTTTAGCTAATGCCTATAAAAA
CAGCTTTAAATTAGCTGCTGAAAAAAATATTAAAACCATTGCTTTCCCTAACATAAGCACAGGGGTATATAGATATCCTA
AAAATCAGGCAGCAAAGGTTGCCTATAATTCAGTAAAAGAGAGCTTAATAAAATATGAAAATATAGAAGAAGTAAGATTT
GTATGTTTTGATGAGTACAATTATAAATTATATCAGGACTTACTATTTGCTGATACTAGATAA

Upstream 100 bases:

>100_bases
TCAGGCTTATACAGAATTATGAAATATTATGGAAGCTGCTATTGGTGATATGATAATTATGATACTAAGTAATAAAAAAT
ATATGTAAGGGGGTTATATT

Downstream 100 bases:

>100_bases
GAGTTTTTTTATAGAGGTTTACTACTAATTATTTATTAGTAAAACAATGTTAAAAAGTATCATGGATTTAAATCTGGGTT
TATAAATGGTAGAAAAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKSIVSKIGQLKTGEAVITSGGNLKAK
YVIHTVGPIWHGGKSNEETLLANAYKNSFKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRF
VCFDEYNYKLYQDLLFADTR

Sequences:

>Translated_180_residues
MSISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKSIVSKIGQLKTGEAVITSGGNLKAK
YVIHTVGPIWHGGKSNEETLLANAYKNSFKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRF
VCFDEYNYKLYQDLLFADTR
>Mature_179_residues
SISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKSIVSKIGQLKTGEAVITSGGNLKAKY
VIHTVGPIWHGGKSNEETLLANAYKNSFKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRFV
CFDEYNYKLYQDLLFADTR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=49.7109826589595, Blast_Score=155, Evalue=2e-38,
Organism=Homo sapiens, GI13569840, Length=171, Percent_Identity=45.6140350877193, Blast_Score=145, Evalue=3e-35,
Organism=Homo sapiens, GI226371710, Length=160, Percent_Identity=35.625, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226371706, Length=160, Percent_Identity=35.625, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226371716, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371714, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371712, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371718, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI20336746, Length=167, Percent_Identity=31.1377245508982, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI154813199, Length=140, Percent_Identity=33.5714285714286, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI207450721, Length=170, Percent_Identity=34.1176470588235, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI8923143, Length=159, Percent_Identity=33.9622641509434, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI93141018, Length=153, Percent_Identity=31.3725490196078, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI93141020, Length=153, Percent_Identity=31.3725490196078, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI4758496, Length=153, Percent_Identity=31.3725490196078, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI8923920, Length=180, Percent_Identity=27.2222222222222, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI165377137, Length=140, Percent_Identity=31.4285714285714, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=52.0710059171598, Blast_Score=191, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=48.2352941176471, Blast_Score=132, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=34.9315068493151, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19737; Mature: 19606

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKSIVSK
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHH
IGQLKTGEAVITSGGNLKAKYVIHTVGPIWHGGKSNEETLLANAYKNSFKLAAEKNIKTI
HCCCCCCCEEEECCCCEEEEEEEEECCCEECCCCCCCCEEEEHHHCCCEEEEECCCEEEE
AFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRFVCFDEYNYKLYQDLLFADTR
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKSIVSK
CCCCCEEEEEEECCCCHHHHHHHHHCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHH
IGQLKTGEAVITSGGNLKAKYVIHTVGPIWHGGKSNEETLLANAYKNSFKLAAEKNIKTI
HCCCCCCCEEEECCCCEEEEEEEEECCCEECCCCCCCCEEEEHHHCCCEEEEECCCEEEE
AFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRFVCFDEYNYKLYQDLLFADTR
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA