Definition Clostridium botulinum A str. Hall, complete genome.
Accession NC_009698
Length 3,760,560

Click here to switch to the map view.

The map label for this gene is rpmF [H]

Identifier: 153935799

GI number: 153935799

Start: 2434736

End: 2434918

Strand: Reverse

Name: rpmF [H]

Synonym: CLC_2306

Alternate gene names: 153935799

Gene position: 2434918-2434736 (Counterclockwise)

Preceding gene: 153935014

Following gene: 153936993

Centisome position: 64.75

GC content: 34.97

Gene sequence:

>183_bases
GTGGGAAATCCAGCGAGAAAAACTTCAAAGGCAAAAAGAGATTCTAGAAAAGCTCAAACTTTCAAATTAAGCTTACCAGG
AATCGTTGAATGCCCTCAATGTCACGAAATGAAACTTGCTCATAGAGTATGTAAAAGTTGTGGATATTACAATGGCAAAG
AAGTTGTATCAAACGATAAATAA

Upstream 100 bases:

>100_bases
GTTAATTTAAATTTTTCAAAATGTAAATGTGAAAAAGATATAGATCCAAGGTTGGCAAAACTAAAAGACTTTTTTTCTAC
TCAGTAAGGAGGTGTTTACA

Downstream 100 bases:

>100_bases
TTATAAAAAAGGAAGTCGTAAGGCTTTCTTTTTTTCTTGTTAAAGAAAAATATTTAGCTTATACTTTATATTAGAAAGGA
AGTGATGTTATGATAATAGC

Product: 50S ribosomal protein L32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 59

Protein sequence:

>60_residues
MGNPARKTSKAKRDSRKAQTFKLSLPGIVECPQCHEMKLAHRVCKSCGYYNGKEVVSNDK

Sequences:

>Translated_60_residues
MGNPARKTSKAKRDSRKAQTFKLSLPGIVECPQCHEMKLAHRVCKSCGYYNGKEVVSNDK
>Mature_59_residues
GNPARKTSKAKRDSRKAQTFKLSLPGIVECPQCHEMKLAHRVCKSCGYYNGKEVVSNDK

Specific function: Unknown

COG id: COG0333

COG function: function code J; Ribosomal protein L32

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L32P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002677
- InterPro:   IPR011332 [H]

Pfam domain/function: PF01783 Ribosomal_L32p [H]

EC number: NA

Molecular weight: Translated: 6726; Mature: 6595

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNPARKTSKAKRDSRKAQTFKLSLPGIVECPQCHEMKLAHRVCKSCGYYNGKEVVSNDK
CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GNPARKTSKAKRDSRKAQTFKLSLPGIVECPQCHEMKLAHRVCKSCGYYNGKEVVSNDK
CCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]