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The map label for this gene is rimP

Identifier: 153935745

GI number: 153935745

Start: 2396970

End: 2397431

Strand: Reverse

Name: rimP

Synonym: CLC_2269

Alternate gene names: 153935745

Gene position: 2397431-2396970 (Counterclockwise)

Preceding gene: 153935522

Following gene: 153936194

Centisome position: 63.75

GC content: 25.76

Gene sequence:

>462_bases
ATGAGTAAGCATAGTTTAATTGAAAATCTTAAAGAACAAATAGAACCTATTGCTGAAGGTTTAGACTATGAATTATATCA
TATAGAATTTGTTAAAGAAGGAAAAGAAAATTATTTAAGAATATATATAGATAGTGAAAATGGTGTGTCTTTAGAGGGCT
GCGAAAAAGTAAGTAGAGCAATTAGTGAATTATTAGATGATATAGATCCAATTCAAGAAAGCTACTATTTAGAAGTTTCT
TCACCAGGAATTGACAGAGTTTTATATACAGATAAACATTTAGAAAAATATAAAAGCTATAATATAGTATTAAATTTATA
TTCACCCATAGATAAAAAGAAAAAATATGAAGGTGAATTAGTAGACTTCAATGAAAATGAGATAGATATAAAGGTTGAAG
AAAACATAGTAACTATACCTAGAGAAAAAATATCAAAGACTACTTTAAAAGGGGAACTGTAA

Upstream 100 bases:

>100_bases
CAGCGTAAGTTGCGTTTTTACATTAATATAAAATAATAGCTGATTATTTGGAAAAACTAAGTGTATAAAATATATTTTAA
AATAGCAAGGAGGGATTTTT

Downstream 100 bases:

>100_bases
GGAGGTTAATAAAAAAATGAACCAGGAATTTGTTGAAGCATTAAGGGAAATAGTAAAAGAAAAAGGTATAAGTGCAGATC
TTTTGTTTACAACTATAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENGVSLEGCEKVSRAISELLDDIDPIQESYYLEVS
SPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDFNENEIDIKVEENIVTIPREKISKTTLKGEL

Sequences:

>Translated_153_residues
MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENGVSLEGCEKVSRAISELLDDIDPIQESYYLEVS
SPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDFNENEIDIKVEENIVTIPREKISKTTLKGEL
>Mature_152_residues
SKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENGVSLEGCEKVSRAISELLDDIDPIQESYYLEVSS
PGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGELVDFNENEIDIKVEENIVTIPREKISKTTLKGEL

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=129, Percent_Identity=38.7596899224806, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_CLOB1 (A7FVZ7)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384597.1
- ProteinModelPortal:   A7FVZ7
- SMR:   A7FVZ7
- STRING:   A7FVZ7
- GeneID:   5396257
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2286
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   PYEKIAN
- ProtClustDB:   PRK00092
- BioCyc:   CBOT441770:CLB_2286-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17821; Mature: 17690

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENGVSLEGCEKVSRA
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHH
ISELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGEL
HHHHHHHHCCCCCCEEEEECCCCCCEEEECHHHHHHHCCEEEEEEECCCCCCHHCCCCCE
VDFNENEIDIKVEENIVTIPREKISKTTLKGEL
EECCCCEEEEEECCCEEECCHHHHHHHHCCCCC
>Mature Secondary Structure 
SKHSLIENLKEQIEPIAEGLDYELYHIEFVKEGKENYLRIYIDSENGVSLEGCEKVSRA
CHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHH
ISELLDDIDPIQESYYLEVSSPGIDRVLYTDKHLEKYKSYNIVLNLYSPIDKKKKYEGEL
HHHHHHHHCCCCCCEEEEECCCCCCEEEECHHHHHHHCCEEEEEEECCCCCCHHCCCCCE
VDFNENEIDIKVEENIVTIPREKISKTTLKGEL
EECCCCEEEEEECCCEEECCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA