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The map label for this gene is rpsA [H]

Identifier: 153935687

GI number: 153935687

Start: 1241818

End: 1242981

Strand: Direct

Name: rpsA [H]

Synonym: CLC_1202

Alternate gene names: 153935687

Gene position: 1241818-1242981 (Clockwise)

Preceding gene: 153936445

Following gene: 153934782

Centisome position: 33.02

GC content: 28.69

Gene sequence:

>1164_bases
ATGTCAGAAGAAATAACAATGAAGGATATGATGGAAGAAATAAATTCTTCAATGAAAAGAATTCATAAAGGAGAACTATT
AAAAGGAAAAGTAATTTCAGTTTCAGATAAAGAAGCCGTGTTAAATATAGGATATATATCTGATGGAATATTACCTAAAA
AAGAAGTTGTAGATAATGAAGAGGTAAATCTTAAAGACATAATAAGTAAAGATGATGTAATTTCTGTTTGTGTACTAGAG
GTAAATGATGGTGAAGGAAATGTACTTTTATCTAAGAAAAAAGCAGAAATTATAGAAGCTTGGTCAAAGCTAGAAAAAGC
TTTTAAAAATGAAGAAATACTAGAAATCAAAGTAGAAGAAATAATAAAGGGAGGAGCTATAGGCCATATACAAGGTATAA
GAGTATTTATACCAGCTTCTCAAATAGATAATAAATATGTTAAAGATTTAAATGTATTTAAAGGTGAAATGGTAAAAGGA
AGATTAATAGAATTAGATAAACAAAAGAGAAAAATAGTTTTATCTAGCAGAGTAGTAAAAGAAGAAGAAGAGGCGAAAAG
AAAAGAAGAACTATTGAATAGTTTAGAAAAGGGACAAAAAATAGAAGGTGTTGTAAGAAGACTAGAAAAGTTTGGAGCTT
TTGTGGATATAGGTGGAATGGATGGATTAGTTCATAATTCTCAGCTATCCTGGGGAAGGGTAAATCATCCTTCAGAAGTA
GTATCTATAGGAGACAAAGTAGAGGTCTATGTTTTAGATTTTGATAAGGATACTAAAAAAATAGCTTTATCTTTAAAGGA
TGTTAAGAAGGATCCTTGGAATACAGTAAAGGATAAATATGCCGTAGGTAGTGTGATAGAAGGAACAATAGTTAAATTAT
TAAACTTTGGAGCCTTTGTAGAAGTGGAAAATGGTATAGAAGGATTAGTTCATATATCAGAAATAACTGATGAACATATA
GCTAAACCATCAGAAAAGTTAAATATAGGCGATAAAGTTAAAGTAAAAGTATTAGAAGTAAATTCAGATGAAAAGAGAAT
GTCATTAAGCATAAAAGAAGCAACAGAAAAGCCAAAGGAAGATTTCTCAAAATATGATGATTCTAAAGAAGAAGATGTAA
CTTTAGGAGATTTATTTGGAGATAAGTTTAAAGATTTATTTTAA

Upstream 100 bases:

>100_bases
TTAAAGCATATACTATTTTTATATATGTATATGTTTTAAATTATGATAAAATTATATTAATTGTATTAGTATAAAAAGAA
AAGTAAGGGGTTGTTTTTTT

Downstream 100 bases:

>100_bases
TATACAAATTATCACTTTAATTTAAGCGATATGCATTACTAAAACACTTATATAATAGGTTTTAGTAATGCTATTTATAT
AGTTACTCAATGAATGCTAT

Product: 30S ribosomal protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLE
VNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKG
RLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHI
AKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF

Sequences:

>Translated_387_residues
MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLE
VNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKG
RLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHI
AKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF
>Mature_386_residues
SEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEV
NDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGR
LIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVV
SIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHIA
KPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF

Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]

COG id: COG0539

COG function: function code J; Ribosomal protein S1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 S1 motif domains [H]

Homologues:

Organism=Homo sapiens, GI70980549, Length=264, Percent_Identity=28.4090909090909, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1787140, Length=353, Percent_Identity=37.1104815864023, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI145693187, Length=76, Percent_Identity=50, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082262, Length=78, Percent_Identity=48.7179487179487, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323885, Length=210, Percent_Identity=29.5238095238095, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: 16,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003451
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR000110
- InterPro:   IPR022967 [H]

Pfam domain/function: PF02401 LYTB; PF00575 S1 [H]

EC number: =1.17.1.2 [H]

Molecular weight: Translated: 43499; Mature: 43367

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHCCCC
EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEE
CCCHHHHCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
IIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELDKQKRKIVLSSRVVK
HHCCCCEEEECCEEEEEEHHHHCHHHHHHHHHHHCCCCCCHHEECCHHHHHHHHHHHHHH
EEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHH
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFV
HCCCCEEEEEEEECCCCCHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
EVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKE
EECCCCCCEEEHHHHHHHHHCCCHHHCCCCCEEEEEEEEECCCCHHHEEEHHHHHCCCHH
DFSKYDDSKEEDVTLGDLFGDKFKDLF
HHHHCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SEEITMKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNE
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHCCCC
EVNLKDIISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEE
CCCHHHHCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
IIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELDKQKRKIVLSSRVVK
HHCCCCEEEECCEEEEEEHHHHCHHHHHHHHHHHCCCCCCHHEECCHHHHHHHHHHHHHH
EEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHH
VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFV
HCCCCEEEEEEEECCCCCHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
EVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKE
EECCCCCCEEEHHHHHHHHHCCCHHHCCCCCEEEEEEEEECCCCHHHEEEHHHHHCCCHH
DFSKYDDSKEEDVTLGDLFGDKFKDLF
HHHHCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]