Click here to switch to the map view.

The map label for this gene is 153935604

Identifier: 153935604

GI number: 153935604

Start: 2524633

End: 2524881

Strand: Direct

Name: 153935604

Synonym: CLC_2401

Alternate gene names: NA

Gene position: 2524633-2524881 (Clockwise)

Preceding gene: 153937351

Following gene: 153936860

Centisome position: 67.13

GC content: 28.92

Gene sequence:

>249_bases
TTGGTATTTAAAGATAGACTAAAAGGATTGCGGGAAGATAGAGATTTAACTCAAGATCAAATCGCAGATATTCTTAAAAT
AACACGCTCTGCTGTAGCTAACTATGAAAACGGTATTCGTGAGCCTGACATTTCTTTATTAGTAAAAATAGCTGATTATT
TTAATATATCCCTAGACTATCTTTTGTGTAGGACAAATAAAATGGAACCATTTTATAAATCTCATTCTAATGATTTAAAA
ACTAAATAA

Upstream 100 bases:

>100_bases
TCTTTTATCAACTTAAAATTTTTTCTATTTTGTCACACAACGTGACATTGATTATTACCAATAATCCCTAATGATAAAAT
TTTTATTTGAGGTGATTATA

Downstream 100 bases:

>100_bases
ATTTAAATTTATTTTTGTGTAGATGCATCTTACACGTATATAATAGCATAAAAAGTGTTCACTGCGAGCGATATTTTCGA
CCAAAATTTGTATAATTTTT

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator; Prophage; Transcriptional Regulator Xre Family

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLLCRTNKMEPFYKSHSNDLK
TK

Sequences:

>Translated_82_residues
MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLLCRTNKMEPFYKSHSNDLK
TK
>Mature_82_residues
MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLLCRTNKMEPFYKSHSNDLK
TK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9610; Mature: 9610

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDY
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
LLCRTNKMEPFYKSHSNDLKTK
HEECCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDY
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
LLCRTNKMEPFYKSHSNDLKTK
HEECCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA