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The map label for this gene is yddE [C]

Identifier: 153935543

GI number: 153935543

Start: 2102751

End: 2103530

Strand: Direct

Name: yddE [C]

Synonym: CLC_1981

Alternate gene names: 153935543

Gene position: 2102751-2103530 (Clockwise)

Preceding gene: 153934855

Following gene: 153936349

Centisome position: 55.92

GC content: 35.51

Gene sequence:

>780_bases
ATGAAATATTATGTTGTTGATGCATTTGCAGAAAAGGTGTTTGAAGGAAATCCAGCTGGTGTATGCATCATGAAGGAATG
GCTACCTGATGAAACCATGCAAAAAATCGCCATTGAGAATAATCTTTCTGAAACAGCATTCGCTGTAAAAAAGGGAGACA
GCTATGGATTAAGATGGTTTACGCCTGGAAAAGAGGTTGATCTTTGTGGTCATGCTACTTTGGCAACAGCTTATGTAATT
GCCAATTATTACGAAAAGAATGTAGACAAAATCAAATTTCAAACAATAAGTGGTGAGCTTATTGTTGTAAAAAAAGGTGA
TCTTTACGAAATGAATTTTCCAAGCAGAATGCCTGAACCATTTTCATTGACAGAGCAAATGATTGAAGCTCTTGGTGTAA
AGCCTTTGGAAGCCTATTTAGGAAGAGATTTAATGTTTGTGCTTGAAAATGAAGAAGATGTTCAAAAGGCATCACCTGAT
TTTTCTAAGCTAGAAAAACTTCCGGATGGTATGGGAGTTTTAATTACTGCCAAAGGTAAAAAGTACGATTTTGTTTCAAG
ATGTTTTTTTCCTAAGATTAAAGTTAACGAAGACCCTGTATGTGGTTCAGCACATTGTAATTTTATTCCTTATTGGGCAA
AATGCCTTGGAAAAGATGAAATGGTAGCAAGACAGCTTTCTAATCGTGGTGGAACATTATACTGCAAATATTGTGGAGAC
AGAGTAACTATCAGCGGCTCAGCTGCTTTGTATTCTATAGCTGATATTAAAATAAATTAG

Upstream 100 bases:

>100_bases
TAATTGTCTTGCATACAATTATATCATTGAGACCATACACTTACAATGATATACTTACTATCATAGTATGATTTCACCTA
AAAATAAGGAGGTTATTATT

Downstream 100 bases:

>100_bases
AAGAAGAGGTTTTCATATTATGAGAATAGAACAAAAAATTAAAGAATTAGGCATTAAACTTCCTGAACTATCTACTCCAA
AGCAATGTATGTACCTGTAA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKYYVVDAFAEKVFEGNPAGVCIMKEWLPDETMQKIAIENNLSETAFAVKKGDSYGLRWFTPGKEVDLCGHATLATAYVI
ANYYEKNVDKIKFQTISGELIVVKKGDLYEMNFPSRMPEPFSLTEQMIEALGVKPLEAYLGRDLMFVLENEEDVQKASPD
FSKLEKLPDGMGVLITAKGKKYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAKCLGKDEMVARQLSNRGGTLYCKYCGD
RVTISGSAALYSIADIKIN

Sequences:

>Translated_259_residues
MKYYVVDAFAEKVFEGNPAGVCIMKEWLPDETMQKIAIENNLSETAFAVKKGDSYGLRWFTPGKEVDLCGHATLATAYVI
ANYYEKNVDKIKFQTISGELIVVKKGDLYEMNFPSRMPEPFSLTEQMIEALGVKPLEAYLGRDLMFVLENEEDVQKASPD
FSKLEKLPDGMGVLITAKGKKYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAKCLGKDEMVARQLSNRGGTLYCKYCGD
RVTISGSAALYSIADIKIN
>Mature_259_residues
MKYYVVDAFAEKVFEGNPAGVCIMKEWLPDETMQKIAIENNLSETAFAVKKGDSYGLRWFTPGKEVDLCGHATLATAYVI
ANYYEKNVDKIKFQTISGELIVVKKGDLYEMNFPSRMPEPFSLTEQMIEALGVKPLEAYLGRDLMFVLENEEDVQKASPD
FSKLEKLPDGMGVLITAKGKKYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAKCLGKDEMVARQLSNRGGTLYCKYCGD
RVTISGSAALYSIADIKIN

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=278, Percent_Identity=36.3309352517986, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI74316009, Length=256, Percent_Identity=34.375, Blast_Score=139, Evalue=4e-33,
Organism=Escherichia coli, GI1787737, Length=292, Percent_Identity=30.4794520547945, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=33.8709677419355, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=33.8709677419355, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17542158, Length=316, Percent_Identity=31.6455696202532, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17542152, Length=316, Percent_Identity=31.6455696202532, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6321818, Length=231, Percent_Identity=31.1688311688312, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29052; Mature: 29052

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYYVVDAFAEKVFEGNPAGVCIMKEWLPDETMQKIAIENNLSETAFAVKKGDSYGLRWF
CEEEEEEHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCEEEE
TPGKEVDLCGHATLATAYVIANYYEKNVDKIKFQTISGELIVVKKGDLYEMNFPSRMPEP
CCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCEEEECCCCCCCCC
FSLTEQMIEALGVKPLEAYLGRDLMFVLENEEDVQKASPDFSKLEKLPDGMGVLITAKGK
HHHHHHHHHHHCCCHHHHHHCCCEEEEEECCHHHHHCCCCHHHHHHCCCCCEEEEEECCC
KYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAKCLGKDEMVARQLSNRGGTLYCKYCGD
CCHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECCC
RVTISGSAALYSIADIKIN
EEEEECCEEEEEEEEEEEC
>Mature Secondary Structure
MKYYVVDAFAEKVFEGNPAGVCIMKEWLPDETMQKIAIENNLSETAFAVKKGDSYGLRWF
CEEEEEEHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCEEEE
TPGKEVDLCGHATLATAYVIANYYEKNVDKIKFQTISGELIVVKKGDLYEMNFPSRMPEP
CCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCEEEECCCCCCCCC
FSLTEQMIEALGVKPLEAYLGRDLMFVLENEEDVQKASPDFSKLEKLPDGMGVLITAKGK
HHHHHHHHHHHCCCHHHHHHCCCEEEEEECCHHHHHCCCCHHHHHHCCCCCEEEEEECCC
KYDFVSRCFFPKIKVNEDPVCGSAHCNFIPYWAKCLGKDEMVARQLSNRGGTLYCKYCGD
CCHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECCC
RVTISGSAALYSIADIKIN
EEEEECCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]