Click here to switch to the map view.

The map label for this gene is pocR [H]

Identifier: 153935312

GI number: 153935312

Start: 1050717

End: 1051754

Strand: Reverse

Name: pocR [H]

Synonym: CLC_1031

Alternate gene names: 153935312

Gene position: 1051754-1050717 (Counterclockwise)

Preceding gene: 153936235

Following gene: 153937776

Centisome position: 27.97

GC content: 27.26

Gene sequence:

>1038_bases
TTGATTAAGGAAAATTTAAATTTAGATAAGGTCATAGATTTTAAAAAATGGATCAAATTACAGGAATCTTTAGCATTAGT
TACTAAAGCAGTTATTATAGTCGTTGATTATAAAGGAAATCCAGTTACAGAACATAGTAGGTGTAATAGGTTCTGCAAGG
CAGTAAGATCAAATCCAGATCTTGTTAAGTATTGTCATAAATGCGATTCAAGAGGTGGATTAGAAGCAGTTCGTTTAAAT
AAACCATATATATACTTATGTCATTATAATATAGTGGATATAGCTATTCCAATAATTATAGATGGCAAATATATTGGTGC
AATTATGGCTGGACAAATAAAACTATCTGATAATAAGGATTCTGATTTCTTAGAACAAATAGTTATAACACCTAAAAATT
CCACGGCTAGACACGCCTTAAAAGAATTTAAAGAGTATTACGATGAAATTCCTGTTTTATCGCTAAAGGAAGTGCAGGAA
ATAGCTAATATGTTATTTTCTTTATGCAATTATTTAGTAGAAGAAGCTTTAGATAAAAATTTAATTTCAGAAATATACAA
AAAAACTGTAACACCTAAATCAGAAATAGATTCAAACACCTTAACAGGATATACAATGAAAAATATTGAAAATGCAAAAA
AGGAAATGTCTAATGTTTTATTAAATTCTTATGTAAAAGAAAATCTTTCAAGTGATAACTTAGATGTTTCAGTAAGTAAT
ACACTAAAGCCTGCTATTGAGTATATTTATAACCATAAAAGCGAAAATATTACTGCAAAAAAATTAGCAGAGGTTTGTCA
TATAAGTCCTAGTTATTTTAGTAGGCTATTTGCAAAAGAAACGGGAAAAAGCTTTTCAAGTTTTATTTCTAATCTAAAGG
TAGATTGGGCGAAAAGCTTATTAGAAGAAACAGATATGCCTATAAATGAAATCAGTGATGAACTTGGTTTTAATGAGACA
GGTTATTTTATAAAAATATTTAAAAAATATGAAAGTGTAACCCCTTTTGTATATAGAAAGTACTGTAAAAAAAATTAA

Upstream 100 bases:

>100_bases
ATGATAAAATATAATATAATGATACATTATGAACAATTGCTTTATATATTTAAAAGAGTTATTTTATCAATATATAATGA
TTTTATAGGAGCAAATAAAA

Downstream 100 bases:

>100_bases
AGAATATCCTTTATACATTGTCTCTAAAAAGATTTAATTTTATATATTAAAATTAAATCTTTTTTTATTTTCCTCTTTAT
ATATTGATAATTGTAATTTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MIKENLNLDKVIDFKKWIKLQESLALVTKAVIIVVDYKGNPVTEHSRCNRFCKAVRSNPDLVKYCHKCDSRGGLEAVRLN
KPYIYLCHYNIVDIAIPIIIDGKYIGAIMAGQIKLSDNKDSDFLEQIVITPKNSTARHALKEFKEYYDEIPVLSLKEVQE
IANMLFSLCNYLVEEALDKNLISEIYKKTVTPKSEIDSNTLTGYTMKNIENAKKEMSNVLLNSYVKENLSSDNLDVSVSN
TLKPAIEYIYNHKSENITAKKLAEVCHISPSYFSRLFAKETGKSFSSFISNLKVDWAKSLLEETDMPINEISDELGFNET
GYFIKIFKKYESVTPFVYRKYCKKN

Sequences:

>Translated_345_residues
MIKENLNLDKVIDFKKWIKLQESLALVTKAVIIVVDYKGNPVTEHSRCNRFCKAVRSNPDLVKYCHKCDSRGGLEAVRLN
KPYIYLCHYNIVDIAIPIIIDGKYIGAIMAGQIKLSDNKDSDFLEQIVITPKNSTARHALKEFKEYYDEIPVLSLKEVQE
IANMLFSLCNYLVEEALDKNLISEIYKKTVTPKSEIDSNTLTGYTMKNIENAKKEMSNVLLNSYVKENLSSDNLDVSVSN
TLKPAIEYIYNHKSENITAKKLAEVCHISPSYFSRLFAKETGKSFSSFISNLKVDWAKSLLEETDMPINEISDELGFNET
GYFIKIFKKYESVTPFVYRKYCKKN
>Mature_345_residues
MIKENLNLDKVIDFKKWIKLQESLALVTKAVIIVVDYKGNPVTEHSRCNRFCKAVRSNPDLVKYCHKCDSRGGLEAVRLN
KPYIYLCHYNIVDIAIPIIIDGKYIGAIMAGQIKLSDNKDSDFLEQIVITPKNSTARHALKEFKEYYDEIPVLSLKEVQE
IANMLFSLCNYLVEEALDKNLISEIYKKTVTPKSEIDSNTLTGYTMKNIENAKKEMSNVLLNSYVKENLSSDNLDVSVSN
TLKPAIEYIYNHKSENITAKKLAEVCHISPSYFSRLFAKETGKSFSSFISNLKVDWAKSLLEETDMPINEISDELGFNET
GYFIKIFKKYESVTPFVYRKYCKKN

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4936

COG function: function code TK; Predicted sensor domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=121, Percent_Identity=30.5785123966942, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786251, Length=115, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39551; Mature: 39551

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKENLNLDKVIDFKKWIKLQESLALVTKAVIIVVDYKGNPVTEHSRCNRFCKAVRSNPD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCH
LVKYCHKCDSRGGLEAVRLNKPYIYLCHYNIVDIAIPIIIDGKYIGAIMAGQIKLSDNKD
HHHHHHHHCCCCCCEEEEECCCEEEEEECCHHHEEEEEEECCHHHHHEEECEEEECCCCC
SDFLEQIVITPKNSTARHALKEFKEYYDEIPVLSLKEVQEIANMLFSLCNYLVEEALDKN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LISEIYKKTVTPKSEIDSNTLTGYTMKNIENAKKEMSNVLLNSYVKENLSSDNLDVSVSN
HHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHH
TLKPAIEYIYNHKSENITAKKLAEVCHISPSYFSRLFAKETGKSFSSFISNLKVDWAKSL
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
LEETDMPINEISDELGFNETGYFIKIFKKYESVTPFVYRKYCKKN
HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MIKENLNLDKVIDFKKWIKLQESLALVTKAVIIVVDYKGNPVTEHSRCNRFCKAVRSNPD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCH
LVKYCHKCDSRGGLEAVRLNKPYIYLCHYNIVDIAIPIIIDGKYIGAIMAGQIKLSDNKD
HHHHHHHHCCCCCCEEEEECCCEEEEEECCHHHEEEEEEECCHHHHHEEECEEEECCCCC
SDFLEQIVITPKNSTARHALKEFKEYYDEIPVLSLKEVQEIANMLFSLCNYLVEEALDKN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LISEIYKKTVTPKSEIDSNTLTGYTMKNIENAKKEMSNVLLNSYVKENLSSDNLDVSVSN
HHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHH
TLKPAIEYIYNHKSENITAKKLAEVCHISPSYFSRLFAKETGKSFSSFISNLKVDWAKSL
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
LEETDMPINEISDELGFNETGYFIKIFKKYESVTPFVYRKYCKKN
HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]