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The map label for this gene is prdB [H]

Identifier: 153935208

GI number: 153935208

Start: 2457851

End: 2458576

Strand: Reverse

Name: prdB [H]

Synonym: CLC_2329

Alternate gene names: 153935208

Gene position: 2458576-2457851 (Counterclockwise)

Preceding gene: 153934813

Following gene: 153936664

Centisome position: 65.38

GC content: 36.64

Gene sequence:

>726_bases
ATGAGTTTAACTATTACAAAAGGTTTACAATCAGAAATATTTGTTCCTATAACTCCAGAACCAGTATGGACACCAGTTAC
AAAGGAACTAAAAGATATGACAGTAGCCATAGCTACTGCAGCAGGAGTTCACTTAAAAAAAGATAAAAGATTTAATTTAG
CAGGTGACTTCACTTATAGATTAATACCAGGAGATGCAAAAACATCAGATATGATGGTATCTCACGGTGGATATGATAAC
TCAGATGTTAACAAAGATATAAATGCTATGTTCCCAATAGATAGATTAAGAGAATTAGTAGATGCTGGCTTTATAAAAGC
AGTTGCCCCAACTCATATAGGTTTTATGGGTGGTGGCGGAAACCAACAAAAATTCAGAGAAGAAACAGGCCCAGAAGTTG
CTAAAATCTTAAAAGAAGAAGGCGTAGACGCTGTATTGATGACTGCTGGATGAGGAACTTGTCATAGATCTGCAGTTTTA
GTGCAGAGAGCGATTGAAAAAGCAGGAATTCCTACAATAATAATAGCTGCCCTTCCACCAGTTGTTAGACAAACTGGTAC
ACCAAGAGCGGTTGCACCAAGAGTTCCAATGGGTGCTAATGCAGGAGAACCTAACAATGTAGAAATGCAAACAGCAATAG
TAAAGGATACATTAGAACAATTAATTAAGATTCCTTCAGCAGGAAAAATAGTTCCACTACCATATGAATATATAGCAAAA
GTTTAG

Upstream 100 bases:

>100_bases
AGAACCTGAGGATAGATGGAAATAAACAGATAATTTAAAACTAGAAACTTTTATAAATAATAATTTAAACATTCATTGAA
GGAAGGAAGGTAAGGTTAAA

Downstream 100 bases:

>100_bases
TTTTGTTACATTAAAAATAAAAAATGCAATAATGTAGTGCAGTTTTACTGAACTCATTATTGCATTTCCTTTAATAAAAA
ATATAAATAAAATGCTCTAT

Product: D-proline reductase, PrdB subunit, selenocysteine-containing

Products: NA

Alternate protein names: D-proline reductase 26 kDa subunit [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSLTITKGLQSEIFVPITPEPVWTPVTKELKDMTVAIATAAGVHLKKDKRFNLAGDFTYRLIPGDAKTSDMMVSHGGYDN
SDVNKDINAMFPIDRLRELVDAGFIKAVAPTHIGFMGGGGNQQKFREETGPEVAKILKEEGVDAVLMTAGUGTCHRSAVL
VQRAIEKAGIPTIIIAALPPVVRQTGTPRAVAPRVPMGANAGEPNNVEMQTAIVKDTLEQLIKIPSAGKIVPLPYEYIAK
V

Sequences:

>Translated_241_residues
MSLTITKGLQSEIFVPITPEPVWTPVTKELKDMTVAIATAAGVHLKKDKRFNLAGDFTYRLIPGDAKTSDMMVSHGGYDN
SDVNKDINAMFPIDRLRELVDAGFIKAVAPTHIGFMGGGGNQQKFREETGPEVAKILKEEGVDAVLMTAG*GTCHRSAVL
VQRAIEKAGIPTIIIAALPPVVRQTGTPRAVAPRVPMGANAGEPNNVEMQTAIVKDTLEQLIKIPSAGKIVPLPYEYIAK
V
>Mature_240_residues
SLTITKGLQSEIFVPITPEPVWTPVTKELKDMTVAIATAAGVHLKKDKRFNLAGDFTYRLIPGDAKTSDMMVSHGGYDNS
DVNKDINAMFPIDRLRELVDAGFIKAVAPTHIGFMGGGGNQQKFREETGPEVAKILKEEGVDAVLMTAG*GTCHRSAVLV
QRAIEKAGIPTIIIAALPPVVRQTGTPRAVAPRVPMGANAGEPNNVEMQTAIVKDTLEQLIKIPSAGKIVPLPYEYIAKV

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022787 [H]

Pfam domain/function: PF07355 GRDB [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 25735; Mature: 25604

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTITKGLQSEIFVPITPEPVWTPVTKELKDMTVAIATAAGVHLKKDKRFNLAGDFTYR
CCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHEEHHCCCEEECCCCCCEECCEEEE
LIPGDAKTSDMMVSHGGYDNSDVNKDINAMFPIDRLRELVDAGFIKAVAPTHIGFMGGGG
EECCCCCCCCEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHEEEECCCC
NQQKFREETGPEVAKILKEEGVDAVLMTAGGTCHRSAVLVQRAIEKAGIPTIIIAALPPV
CHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH
VRQTGTPRAVAPRVPMGANAGEPNNVEMQTAIVKDTLEQLIKIPSAGKIVPLPYEYIAKV
HHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCC
>Mature Secondary Structure 
SLTITKGLQSEIFVPITPEPVWTPVTKELKDMTVAIATAAGVHLKKDKRFNLAGDFTYR
CEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHEEHHCCCEEECCCCCCEECCEEEE
LIPGDAKTSDMMVSHGGYDNSDVNKDINAMFPIDRLRELVDAGFIKAVAPTHIGFMGGGG
EECCCCCCCCEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHEEEECCCC
NQQKFREETGPEVAKILKEEGVDAVLMTAGGTCHRSAVLVQRAIEKAGIPTIIIAALPPV
CHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH
VRQTGTPRAVAPRVPMGANAGEPNNVEMQTAIVKDTLEQLIKIPSAGKIVPLPYEYIAKV
HHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]