| Definition | Clostridium botulinum A str. Hall, complete genome. |
|---|---|
| Accession | NC_009698 |
| Length | 3,760,560 |
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The map label for this gene is yhxC [H]
Identifier: 153935130
GI number: 153935130
Start: 2350157
End: 2351056
Strand: Direct
Name: yhxC [H]
Synonym: CLC_2221
Alternate gene names: 153935130
Gene position: 2350157-2351056 (Clockwise)
Preceding gene: 153935233
Following gene: 153936725
Centisome position: 62.49
GC content: 38.33
Gene sequence:
>900_bases TTGATTCATCACTATCCATATTTCGGTTATATAACAAAATGTAACATGCTTCCTATAACATTTCCACCCCAACACCAGCC TGTACAGCTTGGATTAGAGGTACTTATGTATCCAAGACCCATATTCGATAATCCAGAATATGTTGGAAGTGGCAAATTAA AAAATAAAGTTGCCTTAATTACCGGCGGAGATAGTGGCATTGGTAGAGCAGTATCTCTAGCCTTTGCTAAAGAAGGTGCA GACATTGCTATTGTATACTTTAACGAGCTTGTAGATGCAACAGAAACAAAAGCATTAATAGAGGCCCAAGGAAGAAAGTG TATTTTAATTGCTGGTGATTTGAGGGAAGAGTCCTTTTGCAAGCGCATAGTTAAAGACACACTTTGTGCTTTTGGTCACC TTGACATATTAGTTAATAATGCTGGTGTTCAGTTTCCACAGGATAGCCTTGAAGATATTACCGCTGAACAATTGGAAGAT ACCTTTAGAACAAATATTTTTTCAATGTTCTATGTTACTAAGGCTGCGCTCCCTTACTTAAAAAAAGAAAGTAGCATTAT AAACACTTCCTCAATTACAGCCTACAAGGGTGCTAAATTACTTATTGATTACTCTGCTACAAAGGGAGCTATTGTGAGCT TTACTCGTTCATTAGCTCTTTCTCTTGTATCCAAAGGTATAAGAGTTAATGGAGTTGCCCCTGGACCTACCTGGACACCT CTTATACCATCAAGTTATTCAGCAGAATATGTAGCAACCTTTGGTTTGGATACTCCTATGAAAAGGGCTGGCCAACCTGT AGAACTAGCACCTGCTTATGTTTACTTAGCATCTGATGATTCTACCTTTGTTACTGGTCAAATTCTACATGTAGATGGTG GTAGCTTCCTAGGATCTTAG
Upstream 100 bases:
>100_bases AGTAGTACGGTAGTTTAATAAATTATTTCCACTTTCTTTTTAACACTCTTAAAAATATTACATAAATTAATATATACAAT ATTTTTTAGGAGGAATAAAT
Downstream 100 bases:
>100_bases TTTTTTAAATATAACTATTTCTTTGCGCTAATGTTCTTCTGAATGTTAGCGCATTTATTTGAAATTATTAATGTTTACCA TTAGTATACTCTAAAAATTT
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: ORFX [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MIHHYPYFGYITKCNMLPITFPPQHQPVQLGLEVLMYPRPIFDNPEYVGSGKLKNKVALITGGDSGIGRAVSLAFAKEGA DIAIVYFNELVDATETKALIEAQGRKCILIAGDLREESFCKRIVKDTLCAFGHLDILVNNAGVQFPQDSLEDITAEQLED TFRTNIFSMFYVTKAALPYLKKESSIINTSSITAYKGAKLLIDYSATKGAIVSFTRSLALSLVSKGIRVNGVAPGPTWTP LIPSSYSAEYVATFGLDTPMKRAGQPVELAPAYVYLASDDSTFVTGQILHVDGGSFLGS
Sequences:
>Translated_299_residues MIHHYPYFGYITKCNMLPITFPPQHQPVQLGLEVLMYPRPIFDNPEYVGSGKLKNKVALITGGDSGIGRAVSLAFAKEGA DIAIVYFNELVDATETKALIEAQGRKCILIAGDLREESFCKRIVKDTLCAFGHLDILVNNAGVQFPQDSLEDITAEQLED TFRTNIFSMFYVTKAALPYLKKESSIINTSSITAYKGAKLLIDYSATKGAIVSFTRSLALSLVSKGIRVNGVAPGPTWTP LIPSSYSAEYVATFGLDTPMKRAGQPVELAPAYVYLASDDSTFVTGQILHVDGGSFLGS >Mature_299_residues MIHHYPYFGYITKCNMLPITFPPQHQPVQLGLEVLMYPRPIFDNPEYVGSGKLKNKVALITGGDSGIGRAVSLAFAKEGA DIAIVYFNELVDATETKALIEAQGRKCILIAGDLREESFCKRIVKDTLCAFGHLDILVNNAGVQFPQDSLEDITAEQLED TFRTNIFSMFYVTKAALPYLKKESSIINTSSITAYKGAKLLIDYSATKGAIVSFTRSLALSLVSKGIRVNGVAPGPTWTP LIPSSYSAEYVATFGLDTPMKRAGQPVELAPAYVYLASDDSTFVTGQILHVDGGSFLGS
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=36.3636363636364, Blast_Score=125, Evalue=5e-29, Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=29.4820717131474, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=30.1204819277108, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=32.0987654320988, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.0077519379845, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI31542939, Length=208, Percent_Identity=33.1730769230769, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.4878048780488, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=31.1023622047244, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=29.6875, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=31.6326530612245, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI20149619, Length=229, Percent_Identity=28.3842794759825, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=29.3172690763052, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=33.9080459770115, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=33.1550802139037, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=24.8031496062992, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=29.4444444444444, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7706318, Length=237, Percent_Identity=27.4261603375527, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=185, Percent_Identity=29.1891891891892, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=27.34375, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=149, Percent_Identity=34.2281879194631, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7657478, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI1789378, Length=280, Percent_Identity=49.2857142857143, Blast_Score=267, Evalue=6e-73, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=35.2226720647773, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=35.5102040816327, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.4516129032258, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=30.6122448979592, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=30.3501945525292, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=29.9595141700405, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=28.8617886178862, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=27.1317829457364, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=26.4227642276423, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1788891, Length=241, Percent_Identity=28.2157676348548, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=24.4565217391304, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=35.2272727272727, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=34.469696969697, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=33.4600760456274, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=32.6771653543307, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=33.4586466165414, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.4528301886792, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.824427480916, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=33.7164750957854, Blast_Score=115, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=33.9622641509434, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=32.7067669172932, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=34.5238095238095, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=32.9268292682927, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=33.969465648855, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=32.0754716981132, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=32.9317269076305, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=31.7269076305221, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=30.7984790874525, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=30, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=30.3846153846154, Blast_Score=101, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=28.9795918367347, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.6577946768061, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=30.6818181818182, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536025, Length=269, Percent_Identity=28.6245353159851, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=28.6274509803922, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17564282, Length=218, Percent_Identity=29.8165137614679, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=32.9365079365079, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536651, Length=264, Percent_Identity=26.1363636363636, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI193203117, Length=215, Percent_Identity=30.6976744186047, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203115, Length=214, Percent_Identity=30.3738317757009, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17558006, Length=233, Percent_Identity=29.1845493562232, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=27.8947368421053, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=26.5873015873016, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71982365, Length=152, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=27.363184079602, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=31.9587628865979, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=28.8537549407115, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=256, Percent_Identity=26.171875, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=231, Percent_Identity=29.004329004329, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=35.4838709677419, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=35.2, Blast_Score=131, Evalue=7e-31, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.6032388663968, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.9317269076305, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.4, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=32.5490196078431, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI24644337, Length=246, Percent_Identity=37.3983739837398, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=33.7349397590361, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=28.515625, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI24580925, Length=224, Percent_Identity=25, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364892, Length=225, Percent_Identity=28.4444444444444, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665243, Length=198, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI221331218, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24640492, Length=177, Percent_Identity=27.683615819209, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=27, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24581726, Length=219, Percent_Identity=27.8538812785388, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 32494; Mature: 32494
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHHYPYFGYITKCNMLPITFPPQHQPVQLGLEVLMYPRPIFDNPEYVGSGKLKNKVALI CCCCCCCCEEEEECCEEEEECCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCEEEEE TGGDSGIGRAVSLAFAKEGADIAIVYFNELVDATETKALIEAQGRKCILIAGDLREESFC ECCCCCCCCEEEEEEECCCCCEEEEEEHHHHCHHHHHHHHHCCCCEEEEEECCCCHHHHH KRIVKDTLCAFGHLDILVNNAGVQFPQDSLEDITAEQLEDTFRTNIFSMFYVTKAALPYL HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKESSIINTSSITAYKGAKLLIDYSATKGAIVSFTRSLALSLVSKGIRVNGVAPGPTWTP HCCCCEEECCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC LIPSSYSAEYVATFGLDTPMKRAGQPVELAPAYVYLASDDSTFVTGQILHVDGGSFLGS CCCCCCCCCEEEEECCCCCHHHCCCCEEECCEEEEEECCCCEEEEEEEEEECCCCCCCC >Mature Secondary Structure MIHHYPYFGYITKCNMLPITFPPQHQPVQLGLEVLMYPRPIFDNPEYVGSGKLKNKVALI CCCCCCCCEEEEECCEEEEECCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCEEEEE TGGDSGIGRAVSLAFAKEGADIAIVYFNELVDATETKALIEAQGRKCILIAGDLREESFC ECCCCCCCCEEEEEEECCCCCEEEEEEHHHHCHHHHHHHHHCCCCEEEEEECCCCHHHHH KRIVKDTLCAFGHLDILVNNAGVQFPQDSLEDITAEQLEDTFRTNIFSMFYVTKAALPYL HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKESSIINTSSITAYKGAKLLIDYSATKGAIVSFTRSLALSLVSKGIRVNGVAPGPTWTP HCCCCEEECCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC LIPSSYSAEYVATFGLDTPMKRAGQPVELAPAYVYLASDDSTFVTGQILHVDGGSFLGS CCCCCCCCCEEEEECCCCCHHHCCCCEEECCEEEEEECCCCEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]