Click here to switch to the map view.

The map label for this gene is repC [H]

Identifier: 148244080

GI number: 148244080

Start: 27154

End: 28509

Strand: Reverse

Name: repC [H]

Synonym: Acry_3578

Alternate gene names: 148244080

Gene position: 28509-27154 (Counterclockwise)

Preceding gene: 148244083

Following gene: 148244079

Centisome position: 76.2

GC content: 67.26

Gene sequence:

>1356_bases
ATGGAGACGGAAAGTCCCGGTTTCGGGCAGAATACCAAGACAAATCAGAGATCTGGCGGGCTTCGCCGGCTGAGTCTGGC
AATGATTGCGACGGACCGGACGGCTGAAGGTTTCACCGGCCTGTCAGACGGGGCAGGGGGGCCGGGTGCGGTTCTGGCGG
CCTTCAAGGCGGCGGCGCCCTATCTCGGCCTGCCGCCGCGGGTGGTGCATGCGGTGGACTGGCTGTTCCGCTTTACCCAG
CGGCAGGACTGGGAGCCTGGGGCGCGTCCGGTGGTCTGGCCGTCCGCTACGGTCCAGCAGGCGGATCTTGATCTGGGGGT
ATCGCAGACCAAGGCGCTGAACCGGCTTCTGGTCGAGCTGGGCCTGGTGGTGATGCGGGACAGTCCGAATGGCAAGCGTT
ACGGGCGGCGTGACCGTAGCGGGCGGATCATCGAGGCGTATGGGTTTGACCTGTCACCGCTTGGGGTGCGGCTCGAGGAA
TTCCGGGCTGTGGCGGAGAAGGGGCGGGCGGAGCGCGAGGCGGTTCGCCAGCTGCGCCGGCGGGTGACGATTGCCCGCAA
GGCGATTGAGCAGATCGCGGAGACGGCGGTCGAGGTGGGGCTGGAGCCTGGGGGTTTCGTGCGGGAGGCGGAGGAGGCGC
GCCGGCTGTGCTGGCGTCTGGGCAAGGAGGAGAGATCCACTGTCCTCGTCTTTGGCGTGACCCGGCTCGAGGACCGTCAT
GGCGAGCTGCGCCAGCGGCTTGAGAGTCTGATCGCCGAGCGGCGGGGAAGTGCACAAAAAGATGTGGAAACCGACCCCAA
GGGGCCGGAAAACCGGCCCCACCAATACAGATACAAATCAAACGCTGATCCTGAACAGGATACTGTATCTGGCATTGAGA
AAAGTAGTCCGGCCCCGGTGATGTCGGTGGCACCGACCGGCAGCCCGGGACTGCGGGACGGATCGTCGGGACCACAGACG
GGCAGGGGGGGGCAAAAGCCTGCCCTGCAAGACGATGGCACGGTGCTGCGGATCACGCCGGACGAGCTTGTGCGGCTGGC
GCCGCGGCTGCGGCCCTATCTCGGGCGGTCATCGCCGGCCTGGCCGGATGTTGTGGAGGCGGCGGACTGGCTGCGGCACG
ATCTCGGGGTGTCGAAGCCGCTCTGGGGCGAGGCGTGCCTTGCCATGGGGCGGGAGCAGGCGGCGATCGCGCTGGCTATC
GTCTCGGCGCGGCCGGCGGGGCATTTCAGGAGCACGCCCGGGGGATATTTCCATGGCATGGTGGCAAGGGCTCGAGCCGG
CGAGCTGAACCTCGGCAAGACCATCTGGGGCATGCGGAGCAAGCGTGACACCCACGGCTGGGATCAGCCGCAGTGA

Upstream 100 bases:

>100_bases
CAGACATAGCCATTGCGAGCTGTTTTGCCAAGCGGAAATTGCCGTTTCTGCTGAGGGGAGAGCTTTGCCTGTCGCGATCC
AGCCACAACGGAGGATCACG

Downstream 100 bases:

>100_bases
GACAACACGGGACGGCGCGGTAATGGCACTGGAAGCCGATTATCTTGAGGCGCTTGGGCTGCTCGGCCGCGTCTGCGAGG
AGTATCGCCGCGAGACCGGA

Product: replication protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
METESPGFGQNTKTNQRSGGLRRLSLAMIATDRTAEGFTGLSDGAGGPGAVLAAFKAAAPYLGLPPRVVHAVDWLFRFTQ
RQDWEPGARPVVWPSATVQQADLDLGVSQTKALNRLLVELGLVVMRDSPNGKRYGRRDRSGRIIEAYGFDLSPLGVRLEE
FRAVAEKGRAEREAVRQLRRRVTIARKAIEQIAETAVEVGLEPGGFVREAEEARRLCWRLGKEERSTVLVFGVTRLEDRH
GELRQRLESLIAERRGSAQKDVETDPKGPENRPHQYRYKSNADPEQDTVSGIEKSSPAPVMSVAPTGSPGLRDGSSGPQT
GRGGQKPALQDDGTVLRITPDELVRLAPRLRPYLGRSSPAWPDVVEAADWLRHDLGVSKPLWGEACLAMGREQAAIALAI
VSARPAGHFRSTPGGYFHGMVARARAGELNLGKTIWGMRSKRDTHGWDQPQ

Sequences:

>Translated_451_residues
METESPGFGQNTKTNQRSGGLRRLSLAMIATDRTAEGFTGLSDGAGGPGAVLAAFKAAAPYLGLPPRVVHAVDWLFRFTQ
RQDWEPGARPVVWPSATVQQADLDLGVSQTKALNRLLVELGLVVMRDSPNGKRYGRRDRSGRIIEAYGFDLSPLGVRLEE
FRAVAEKGRAEREAVRQLRRRVTIARKAIEQIAETAVEVGLEPGGFVREAEEARRLCWRLGKEERSTVLVFGVTRLEDRH
GELRQRLESLIAERRGSAQKDVETDPKGPENRPHQYRYKSNADPEQDTVSGIEKSSPAPVMSVAPTGSPGLRDGSSGPQT
GRGGQKPALQDDGTVLRITPDELVRLAPRLRPYLGRSSPAWPDVVEAADWLRHDLGVSKPLWGEACLAMGREQAAIALAI
VSARPAGHFRSTPGGYFHGMVARARAGELNLGKTIWGMRSKRDTHGWDQPQ
>Mature_451_residues
METESPGFGQNTKTNQRSGGLRRLSLAMIATDRTAEGFTGLSDGAGGPGAVLAAFKAAAPYLGLPPRVVHAVDWLFRFTQ
RQDWEPGARPVVWPSATVQQADLDLGVSQTKALNRLLVELGLVVMRDSPNGKRYGRRDRSGRIIEAYGFDLSPLGVRLEE
FRAVAEKGRAEREAVRQLRRRVTIARKAIEQIAETAVEVGLEPGGFVREAEEARRLCWRLGKEERSTVLVFGVTRLEDRH
GELRQRLESLIAERRGSAQKDVETDPKGPENRPHQYRYKSNADPEQDTVSGIEKSSPAPVMSVAPTGSPGLRDGSSGPQT
GRGGQKPALQDDGTVLRITPDELVRLAPRLRPYLGRSSPAWPDVVEAADWLRHDLGVSKPLWGEACLAMGREQAAIALAI
VSARPAGHFRSTPGGYFHGMVARARAGELNLGKTIWGMRSKRDTHGWDQPQ

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 49434; Mature: 49434

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METESPGFGQNTKTNQRSGGLRRLSLAMIATDRTAEGFTGLSDGAGGPGAVLAAFKAAAP
CCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
YLGLPPRVVHAVDWLFRFTQRQDWEPGARPVVWPSATVQQADLDLGVSQTKALNRLLVEL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHCCCHHHHHHHHHHHHHH
GLVVMRDSPNGKRYGRRDRSGRIIEAYGFDLSPLGVRLEEFRAVAEKGRAEREAVRQLRR
CEEEEECCCCCHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
RVTIARKAIEQIAETAVEVGLEPGGFVREAEEARRLCWRLGKEERSTVLVFGVTRLEDRH
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
GELRQRLESLIAERRGSAQKDVETDPKGPENRPHQYRYKSNADPEQDTVSGIEKSSPAPV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
MSVAPTGSPGLRDGSSGPQTGRGGQKPALQDDGTVLRITPDELVRLAPRLRPYLGRSSPA
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC
WPDVVEAADWLRHDLGVSKPLWGEACLAMGREQAAIALAIVSARPAGHFRSTPGGYFHGM
CHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHEEEEEEEECCCCCCCCCCCCHHHHHH
VARARAGELNLGKTIWGMRSKRDTHGWDQPQ
HHHHCCCCCCCCHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
METESPGFGQNTKTNQRSGGLRRLSLAMIATDRTAEGFTGLSDGAGGPGAVLAAFKAAAP
CCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
YLGLPPRVVHAVDWLFRFTQRQDWEPGARPVVWPSATVQQADLDLGVSQTKALNRLLVEL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHCCCHHHHHHHHHHHHHH
GLVVMRDSPNGKRYGRRDRSGRIIEAYGFDLSPLGVRLEEFRAVAEKGRAEREAVRQLRR
CEEEEECCCCCHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
RVTIARKAIEQIAETAVEVGLEPGGFVREAEEARRLCWRLGKEERSTVLVFGVTRLEDRH
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
GELRQRLESLIAERRGSAQKDVETDPKGPENRPHQYRYKSNADPEQDTVSGIEKSSPAPV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
MSVAPTGSPGLRDGSSGPQTGRGGQKPALQDDGTVLRITPDELVRLAPRLRPYLGRSSPA
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCC
WPDVVEAADWLRHDLGVSKPLWGEACLAMGREQAAIALAIVSARPAGHFRSTPGGYFHGM
CHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHEEEEEEEECCCCCCCCCCCCHHHHHH
VARARAGELNLGKTIWGMRSKRDTHGWDQPQ
HHHHCCCCCCCCHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA