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The map label for this gene is traD [H]

Identifier: 148244063

GI number: 148244063

Start: 7483

End: 9297

Strand: Direct

Name: traD [H]

Synonym: Acry_3560

Alternate gene names: 148244063

Gene position: 7483-9297 (Clockwise)

Preceding gene: 148244062

Following gene: 148244064

Centisome position: 20.0

GC content: 56.75

Gene sequence:

>1815_bases
ATGCTGAGCATCAAACCAAGCACAAGCAACGCTGTATATCGCGTGGCAATGGGCTTCACGATGATCTACGCGGCGCTTCT
CACCTTCGGTTTCTGGTTCGCCTGGCTAAGGGCGGAGTCCGCCTATCTGTTCATCCTGCAAAGTTCGGCAGCATCGATCA
TCGTTAATGTGGGTCTGCCGGCAATCGCCAATATGGCCCGGAATCAGGTGGAACGGCGACAGATTTTTCACCGAGCGCTC
TCCCTCGTCGTGGTGCTTGGCATCGTCAATTTTGCGGGCCTCTACTACGGCTCGAAATATCTATACGAAACAGGTTTCCC
CGGCTGGGCCGCGTGGTTCACCACGATATTGGTAGCCGGGATGGTAACGCTCCTGGCAACCTTCATCACGCTGGGAGCCC
CATCGATTGAAAAACAGATCATGGAAATTCCGCCACATATCGGCGCGCTCAGGCCAGGTGAAAAATGGCTGAGGGGAGCG
AAGATCGAAGCCGCGCCGCAAGGACAGATCATTGATCGCGGGCGTCTGTCGGTCGGAGGAATTCCTCTGGAATGGGATCG
GGAAGTCCAGCACACCTTTCTCAATGGCGCGGCCGGTACGGGAAAAACCCAAGTCGCCGAAGGTTTTTTGCGGGCAATTC
GCGAACGCGCACTGCTCCCCTATATAAAAAAATCGCCCCGCGTGATTATCCTCGATCCGGGCGGCGCATATTATAGCCGC
TTCGGACAGGACGGGGATGTCTTGTTGAACCCGTTCGATGCCCGCTCGGTGGCATGGTCACCATTCGCGGAGATAAAAAG
GCCGCAGGACTTTAATCGGGTAGCTGCGGCTTTCGTGCCCCTTGCGGAGGGACCAAATAAGGAATGGTCTGAGTTCGGCA
GAAAGACTATGGCCGACACGATGCGGGCGATGGTCAGGAATGACGAAAAAAGCCCGCAAGAGCTATTCCGCCTTCTGGAT
GGATCGGCTGAAAATCTCGCATTCTATCTGAACAACGCAGAGATTTATGGCCTTACAGGCGAGGAAAACATGAAGATGTT
TTCCAACGCCAAGGCGACCATCGCGCCGAATATCGAGATATTTCAATATCTGAAACCGGACGGCAATTTCTCGGTGCGGG
ATTGGTTACGCAAGGGCGATGAGGCGAACGACTCCGGCTGGCTGTTCATCACCTACCGCGACGATCAGATGAAGCTGCTC
CGCCAGTTCGTCGCGGCCATGGCCGATCTGGCTATCCTGGAAGGGCTGAGCTTGCCCTCCAACGAAGGGCTGCCGGCCGA
GGAACACCGCCGCCTGTTCTATTTCATGGACGAGCTGGACTCCATCGGCGCGGTGTCCGAGCTGAAAGACGCGCTCATAA
AGCTACGAAAATTCGGCGGCTGTTGTGTTCTCGGCTTGCAGACGATCTCACAGCTTCGCGCCGTCTACGGCAGAGACACG
ACCCGCGCCATCCTCGGCAACGTCGCGACCAATGTTGTCTTGCGCCCGCAGGATGGCGAGACTGCCGAAGAAATGGAAAA
GCTGCTCGGAGATCAGGATATCGAGCGCGAGACGGTCACCTACTCCCAAAGCGCCGGCAATTCGCGCTCCGGCATGTTCG
GTAATGGGCACTCCAACACATCAACCGGGCGAACCGCCAACCAACAAAGGCAGATCGTCACCCGCAAATGCGTGCTGGCC
TCCGAGTTGCAGAACATGGAAAACCTGCACGGCATCCTTATGCGCCCCGCGTCGCCGCATCACCCCTTCACCCTGGATTA
CGTGGAGATGCCCCGGATCAACGCGCCGTTCGTAGAGCATGAATATGCTGGCTAA

Upstream 100 bases:

>100_bases
TCCACCGCTCCGGATCAGTCAGAAGACAAATCGCCAGAGCCGCCCGCAGGCGACAATATGACGCCAAAGAAAAATATCTC
TTGAGCGGCTCGAGCTTAAA

Downstream 100 bases:

>100_bases
TCGGCTCGTCCGCTGGGGCATCACCGCGATTATCGGGCTGATCGCTCTCCAGCTCGCCCTTGGCATCCTCACCGCACTCA
TCCCCGATCTGTGGTGGTTC

Product: Type IV secretory pathway VirD4 components-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MLSIKPSTSNAVYRVAMGFTMIYAALLTFGFWFAWLRAESAYLFILQSSAASIIVNVGLPAIANMARNQVERRQIFHRAL
SLVVVLGIVNFAGLYYGSKYLYETGFPGWAAWFTTILVAGMVTLLATFITLGAPSIEKQIMEIPPHIGALRPGEKWLRGA
KIEAAPQGQIIDRGRLSVGGIPLEWDREVQHTFLNGAAGTGKTQVAEGFLRAIRERALLPYIKKSPRVIILDPGGAYYSR
FGQDGDVLLNPFDARSVAWSPFAEIKRPQDFNRVAAAFVPLAEGPNKEWSEFGRKTMADTMRAMVRNDEKSPQELFRLLD
GSAENLAFYLNNAEIYGLTGEENMKMFSNAKATIAPNIEIFQYLKPDGNFSVRDWLRKGDEANDSGWLFITYRDDQMKLL
RQFVAAMADLAILEGLSLPSNEGLPAEEHRRLFYFMDELDSIGAVSELKDALIKLRKFGGCCVLGLQTISQLRAVYGRDT
TRAILGNVATNVVLRPQDGETAEEMEKLLGDQDIERETVTYSQSAGNSRSGMFGNGHSNTSTGRTANQQRQIVTRKCVLA
SELQNMENLHGILMRPASPHHPFTLDYVEMPRINAPFVEHEYAG

Sequences:

>Translated_604_residues
MLSIKPSTSNAVYRVAMGFTMIYAALLTFGFWFAWLRAESAYLFILQSSAASIIVNVGLPAIANMARNQVERRQIFHRAL
SLVVVLGIVNFAGLYYGSKYLYETGFPGWAAWFTTILVAGMVTLLATFITLGAPSIEKQIMEIPPHIGALRPGEKWLRGA
KIEAAPQGQIIDRGRLSVGGIPLEWDREVQHTFLNGAAGTGKTQVAEGFLRAIRERALLPYIKKSPRVIILDPGGAYYSR
FGQDGDVLLNPFDARSVAWSPFAEIKRPQDFNRVAAAFVPLAEGPNKEWSEFGRKTMADTMRAMVRNDEKSPQELFRLLD
GSAENLAFYLNNAEIYGLTGEENMKMFSNAKATIAPNIEIFQYLKPDGNFSVRDWLRKGDEANDSGWLFITYRDDQMKLL
RQFVAAMADLAILEGLSLPSNEGLPAEEHRRLFYFMDELDSIGAVSELKDALIKLRKFGGCCVLGLQTISQLRAVYGRDT
TRAILGNVATNVVLRPQDGETAEEMEKLLGDQDIERETVTYSQSAGNSRSGMFGNGHSNTSTGRTANQQRQIVTRKCVLA
SELQNMENLHGILMRPASPHHPFTLDYVEMPRINAPFVEHEYAG
>Mature_604_residues
MLSIKPSTSNAVYRVAMGFTMIYAALLTFGFWFAWLRAESAYLFILQSSAASIIVNVGLPAIANMARNQVERRQIFHRAL
SLVVVLGIVNFAGLYYGSKYLYETGFPGWAAWFTTILVAGMVTLLATFITLGAPSIEKQIMEIPPHIGALRPGEKWLRGA
KIEAAPQGQIIDRGRLSVGGIPLEWDREVQHTFLNGAAGTGKTQVAEGFLRAIRERALLPYIKKSPRVIILDPGGAYYSR
FGQDGDVLLNPFDARSVAWSPFAEIKRPQDFNRVAAAFVPLAEGPNKEWSEFGRKTMADTMRAMVRNDEKSPQELFRLLD
GSAENLAFYLNNAEIYGLTGEENMKMFSNAKATIAPNIEIFQYLKPDGNFSVRDWLRKGDEANDSGWLFITYRDDQMKLL
RQFVAAMADLAILEGLSLPSNEGLPAEEHRRLFYFMDELDSIGAVSELKDALIKLRKFGGCCVLGLQTISQLRAVYGRDT
TRAILGNVATNVVLRPQDGETAEEMEKLLGDQDIERETVTYSQSAGNSRSGMFGNGHSNTSTGRTANQQRQIVTRKCVLA
SELQNMENLHGILMRPASPHHPFTLDYVEMPRINAPFVEHEYAG

Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energize DNA transport [H]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To traD of plasmid IncFII R100 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014128
- InterPro:   IPR019476
- InterPro:   IPR022585 [H]

Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]

EC number: NA

Molecular weight: Translated: 67220; Mature: 67220

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIKPSTSNAVYRVAMGFTMIYAALLTFGFWFAWLRAESAYLFILQSSAASIIVNVGLP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCH
AIANMARNQVERRQIFHRALSLVVVLGIVNFAGLYYGSKYLYETGFPGWAAWFTTILVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
MVTLLATFITLGAPSIEKQIMEIPPHIGALRPGEKWLRGAKIEAAPQGQIIDRGRLSVGG
HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCEECC
IPLEWDREVQHTFLNGAAGTGKTQVAEGFLRAIRERALLPYIKKSPRVIILDPGGAYYSR
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
FGQDGDVLLNPFDARSVAWSPFAEIKRPQDFNRVAAAFVPLAEGPNKEWSEFGRKTMADT
CCCCCCEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MRAMVRNDEKSPQELFRLLDGSAENLAFYLNNAEIYGLTGEENMKMFSNAKATIAPNIEI
HHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECEEEEEECCCCCHHHHHCCCEEECCCHHE
FQYLKPDGNFSVRDWLRKGDEANDSGWLFITYRDDQMKLLRQFVAAMADLAILEGLSLPS
EEEECCCCCCCHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCC
NEGLPAEEHRRLFYFMDELDSIGAVSELKDALIKLRKFGGCCVLGLQTISQLRAVYGRDT
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCH
TRAILGNVATNVVLRPQDGETAEEMEKLLGDQDIERETVTYSQSAGNSRSGMFGNGHSNT
HHHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCC
STGRTANQQRQIVTRKCVLASELQNMENLHGILMRPASPHHPFTLDYVEMPRINAPFVEH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEECCEECCCCCCCCCCC
EYAG
CCCC
>Mature Secondary Structure
MLSIKPSTSNAVYRVAMGFTMIYAALLTFGFWFAWLRAESAYLFILQSSAASIIVNVGLP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCH
AIANMARNQVERRQIFHRALSLVVVLGIVNFAGLYYGSKYLYETGFPGWAAWFTTILVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
MVTLLATFITLGAPSIEKQIMEIPPHIGALRPGEKWLRGAKIEAAPQGQIIDRGRLSVGG
HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCEECC
IPLEWDREVQHTFLNGAAGTGKTQVAEGFLRAIRERALLPYIKKSPRVIILDPGGAYYSR
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
FGQDGDVLLNPFDARSVAWSPFAEIKRPQDFNRVAAAFVPLAEGPNKEWSEFGRKTMADT
CCCCCCEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MRAMVRNDEKSPQELFRLLDGSAENLAFYLNNAEIYGLTGEENMKMFSNAKATIAPNIEI
HHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECEEEEEECCCCCHHHHHCCCEEECCCHHE
FQYLKPDGNFSVRDWLRKGDEANDSGWLFITYRDDQMKLLRQFVAAMADLAILEGLSLPS
EEEECCCCCCCHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCC
NEGLPAEEHRRLFYFMDELDSIGAVSELKDALIKLRKFGGCCVLGLQTISQLRAVYGRDT
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCH
TRAILGNVATNVVLRPQDGETAEEMEKLLGDQDIERETVTYSQSAGNSRSGMFGNGHSNT
HHHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCC
STGRTANQQRQIVTRKCVLASELQNMENLHGILMRPASPHHPFTLDYVEMPRINAPFVEH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEECCEECCCCCCCCCCC
EYAG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2680768; 7915817; 10464182; 3323526; 2164585; 2163400; 1618779; 10498725 [H]