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The map label for this gene is 89256980

Identifier: 89256980

GI number: 89256980

Start: 1643127

End: 1643675

Strand: Reverse

Name: 89256980

Synonym: FTL_1711

Alternate gene names: NA

Gene position: 1643675-1643127 (Counterclockwise)

Preceding gene: 89256981

Following gene: 89256979

Centisome position: 86.69

GC content: 34.43

Gene sequence:

>549_bases
GTGCTATCAGATGAATTTTTGGCAGAGGTAAGAAATTATAAGCATAAAAATATTGCTTTAGAAACACTCAAAAAACTTCT
AAACCAAGAGATAAAAGCTCGCTCAAAAACTAACCTAGTCCAATCAAAGACACTCAAAGAGATGTTGGAGGATTCAATTC
GTCGTTATCATAGCAAGGCTATTTCATCAGTTGAGTTTTTAGATGAGCTAATAAACCAAGCTAAAGAAATTAAAAATATG
GATACTGAGTATCAAAAGCTAGGTTTGACAGAGTATGAGTATGCTTTCTATACAGCAGTAGCAAGTAATAAAAGTGCTAA
AGAGTTAATGCAGACTAATAAACTACGAGAGCTAGCGATAGAGCTATTTAATCGCTTAAAATCATTAGTTTCGATAAATT
GGACAAAAAAAGAGTCTGTGAGAGCTAAGCTTAGAGTTACAGTCAAAAGAACGCTCAGACAATTTGGCTATCCACCAGAT
ATGCAAAAGCTAGCTACTGATACCGTACTTAAACAAGCAGAGCAGTTAGCAAAAGAGCTTTTGAAATAG

Upstream 100 bases:

>100_bases
TAGCTCTAAACAATCCAACTATAGTGGTTATCACAGATAGAAACGATCTTGATGATCAGCTATTTGATACTTTTGCAGCA
TCAAAAAACCAGATATATCA

Downstream 100 bases:

>100_bases
TACTAGAGCTATCTAAATCAACTAGCATTGATCTAAATAAATCTGTAAATATGGATTTTAAAAAAAGTTAAAAACTGTAC
TAGTGTCGGTACTATTTTTA

Product: HsdR protein, fragment

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MLSDEFLAEVRNYKHKNIALETLKKLLNQEIKARSKTNLVQSKTLKEMLEDSIRRYHSKAISSVEFLDELINQAKEIKNM
DTEYQKLGLTEYEYAFYTAVASNKSAKELMQTNKLRELAIELFNRLKSLVSINWTKKESVRAKLRVTVKRTLRQFGYPPD
MQKLATDTVLKQAEQLAKELLK

Sequences:

>Translated_182_residues
MLSDEFLAEVRNYKHKNIALETLKKLLNQEIKARSKTNLVQSKTLKEMLEDSIRRYHSKAISSVEFLDELINQAKEIKNM
DTEYQKLGLTEYEYAFYTAVASNKSAKELMQTNKLRELAIELFNRLKSLVSINWTKKESVRAKLRVTVKRTLRQFGYPPD
MQKLATDTVLKQAEQLAKELLK
>Mature_182_residues
MLSDEFLAEVRNYKHKNIALETLKKLLNQEIKARSKTNLVQSKTLKEMLEDSIRRYHSKAISSVEFLDELINQAKEIKNM
DTEYQKLGLTEYEYAFYTAVASNKSAKELMQTNKLRELAIELFNRLKSLVSINWTKKESVRAKLRVTVKRTLRQFGYPPD
MQKLATDTVLKQAEQLAKELLK

Specific function: Subunit R is required for both nuclease and ATPase activities, but not for modification [H]

COG id: COG0610

COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR021810
- InterPro:   IPR014021
- InterPro:   IPR004473
- InterPro:   IPR006935
- InterPro:   IPR007409 [H]

Pfam domain/function: PF11867 DUF3387; PF04313 HSDR_N; PF04851 ResIII [H]

EC number: =3.1.21.3 [H]

Molecular weight: Translated: 21261; Mature: 21261

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSDEFLAEVRNYKHKNIALETLKKLLNQEIKARSKTNLVQSKTLKEMLEDSIRRYHSKA
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISSVEFLDELINQAKEIKNMDTEYQKLGLTEYEYAFYTAVASNKSAKELMQTNKLRELAI
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ELFNRLKSLVSINWTKKESVRAKLRVTVKRTLRQFGYPPDMQKLATDTVLKQAEQLAKEL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LK
HC
>Mature Secondary Structure
MLSDEFLAEVRNYKHKNIALETLKKLLNQEIKARSKTNLVQSKTLKEMLEDSIRRYHSKA
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISSVEFLDELINQAKEIKNMDTEYQKLGLTEYEYAFYTAVASNKSAKELMQTNKLRELAI
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ELFNRLKSLVSINWTKKESVRAKLRVTVKRTLRQFGYPPDMQKLATDTVLKQAEQLAKEL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LK
HC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]