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The map label for this gene is oppA [H]

Identifier: 89256927

GI number: 89256927

Start: 1582344

End: 1583603

Strand: Reverse

Name: oppA [H]

Synonym: FTL_1654

Alternate gene names: 89256927

Gene position: 1583603-1582344 (Counterclockwise)

Preceding gene: 89256928

Following gene: 89256926

Centisome position: 83.52

GC content: 34.44

Gene sequence:

>1260_bases
ATGCTCAAAAAAACATTAATACTCTTATCTTTGGCTAGTGTACTTATATTGACTGGTTGCTCTAATGATTCAGATAATAA
TATTGACCCTTATGCTGGACAATTAACAAAGAATAATAACCAACTTGTTGTAAATATAGGCTCTGATATGCCATCAATTG
ATCCTCAACAATCTTCTGATAATAGTTCAAATAGAGTAATTGAGGATATCTTTGAAGGTCTGGTTGATTATAATCAAAAA
TCAGAGGTTATCCCAACAGGGGCATCTAGTTGGAAGATATCTAAAGATGGTAAGACTTATACATTTTATCTAAGAAAAAA
TGCTAAATGGACTAATGGTGATCCTGTCACAGCAGATGACTATGTCTATTCATATAGAAGATCTGTAACACCAGAGACTT
TAACACGTGCTTATGCTTCATATTTTAATCCAATTGTAAATGCTGTAGCTATTCAGGCTGGCAAAAAGTCTCCAGAGACA
CTCGGAGTAAAAGCTGTAGACAAATATACTCTACAGATCAAACTTACAGAACCTAATCCAACATTTTTGGATTCTTTGAC
TATTTACGCATTTTTTCCTGTGAATAAAAAGGCGATAGAAAAGTACGGAGATTCTTGGGCTGCTAAACCCGATACAATCA
TAAGTAATGGCACATATAAACTAACAAAATGGATACACAATGGTTATGCTTTGGCAGAGAAGTCTTCTAATTACTGGGAT
GCTAAAAATGTAAGTATTGATTCTGTAAAGTATCTAATGATTAATGATGTCTCTAGTGATTTAGAGAATTACAAAGCTGG
AGGTGAGAGTCTTACCTATAATAATCTACCCGCTAATACAGCAGAGTGGTATAAAGAACACTTTACAAATAATCAATTTC
AGCCATCACCTATGCTTGCGCAGGCTTACTTTATATTTAATATGAGAGACACTAAGTTTCAAGACATTAGGGTACGTAAG
GCTTTAAGTATGGTTATCGATAGAAAAGGTATCGCTGAAGGTGTTAAGAAAGGTTTAGTTACTCCTTCTTATTTGGTTGT
GCCAGAAACTGTAGCTGGAGGAAGGTACAAAGATCTGGCAAAAGATATTCCTGATTATGATTGGGTAAATGAACCTATAG
AGCAAAGAATAAAACAAGCAAGACAACTTCTCAAAGAAGCTGGCTATTCAAAAAAACATCCACTTGAGTTTACTATTAAT
TTCAATACCTCTGATGTTAACCGTTTAATGGCACAAATTTTACAGGGCTCGTGGCAATAA

Upstream 100 bases:

>100_bases
GATTAAATTAGCTTGTACTTTTATTTGGCTACTGAGAAACTATTTTTGTGCACAGAACCTAGTTTAGATTTAAAATAATT
AACATTTTTTATATTAGATT

Downstream 100 bases:

>100_bases
GATTTTGGAGATTTAGTCAAAGTTAGTATCTTCAATGAAGACTGGAAGGTATATCTTGATAGCTTAAAGAATGGTAATTT
TGATGTTGCTAGAATGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLKKTLILLSLASVLILTGCSNDSDNNIDPYAGQLTKNNNQLVVNIGSDMPSIDPQQSSDNSSNRVIEDIFEGLVDYNQK
SEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGDPVTADDYVYSYRRSVTPETLTRAYASYFNPIVNAVAIQAGKKSPET
LGVKAVDKYTLQIKLTEPNPTFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGTYKLTKWIHNGYALAEKSSNYWD
AKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKFQDIRVRK
ALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKHPLEFTIN
FNTSDVNRLMAQILQGSWQ

Sequences:

>Translated_419_residues
MLKKTLILLSLASVLILTGCSNDSDNNIDPYAGQLTKNNNQLVVNIGSDMPSIDPQQSSDNSSNRVIEDIFEGLVDYNQK
SEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGDPVTADDYVYSYRRSVTPETLTRAYASYFNPIVNAVAIQAGKKSPET
LGVKAVDKYTLQIKLTEPNPTFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGTYKLTKWIHNGYALAEKSSNYWD
AKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKFQDIRVRK
ALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKHPLEFTIN
FNTSDVNRLMAQILQGSWQ
>Mature_419_residues
MLKKTLILLSLASVLILTGCSNDSDNNIDPYAGQLTKNNNQLVVNIGSDMPSIDPQQSSDNSSNRVIEDIFEGLVDYNQK
SEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGDPVTADDYVYSYRRSVTPETLTRAYASYFNPIVNAVAIQAGKKSPET
LGVKAVDKYTLQIKLTEPNPTFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGTYKLTKWIHNGYALAEKSSNYWD
AKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKFQDIRVRK
ALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKHPLEFTIN
FNTSDVNRLMAQILQGSWQ

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=419, Percent_Identity=33.6515513126492, Blast_Score=234, Evalue=9e-63,
Organism=Escherichia coli, GI1787495, Length=390, Percent_Identity=36.1538461538462, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI87081878, Length=389, Percent_Identity=35.4755784061697, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI1787052, Length=379, Percent_Identity=25.3298153034301, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1789966, Length=371, Percent_Identity=28.0323450134771, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789887, Length=438, Percent_Identity=24.8858447488584, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787762, Length=321, Percent_Identity=23.0529595015576, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 47235; Mature: 47235

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKTLILLSLASVLILTGCSNDSDNNIDPYAGQLTKNNNQLVVNIGSDMPSIDPQQSSD
CCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCC
NSSNRVIEDIFEGLVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGDPVTADD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCHH
YVYSYRRSVTPETLTRAYASYFNPIVNAVAIQAGKKSPETLGVKAVDKYTLQIKLTEPNP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEEEEEEEEEEECCCC
TFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGTYKLTKWIHNGYALAEKSSNYWD
CHHCCEEEEEEECCCHHHHHHHCCCCCCCCCCEECCCCEEEHHHHHCCEEEEECCCCCCC
AKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLA
CCCCCCCCEEEEEEECHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCHHE
QAYFIFNMRDTKFQDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLA
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHH
KDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKHPLEFTINFNTSDVNRLMAQILQGSWQ
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKKTLILLSLASVLILTGCSNDSDNNIDPYAGQLTKNNNQLVVNIGSDMPSIDPQQSSD
CCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCC
NSSNRVIEDIFEGLVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGDPVTADD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCHH
YVYSYRRSVTPETLTRAYASYFNPIVNAVAIQAGKKSPETLGVKAVDKYTLQIKLTEPNP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEEEEEEEEEEECCCC
TFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGTYKLTKWIHNGYALAEKSSNYWD
CHHCCEEEEEEECCCHHHHHHHCCCCCCCCCCEECCCCEEEHHHHHCCEEEEECCCCCCC
AKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLA
CCCCCCCCEEEEEEECHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCHHE
QAYFIFNMRDTKFQDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLA
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHH
KDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKHPLEFTINFNTSDVNRLMAQILQGSWQ
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]