| Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
|---|---|
| Accession | NC_007880 |
| Length | 1,895,994 |
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The map label for this gene is oppD [H]
Identifier: 89256925
GI number: 89256925
Start: 1579298
End: 1580101
Strand: Reverse
Name: oppD [H]
Synonym: FTL_1648
Alternate gene names: 89256925
Gene position: 1580101-1579298 (Counterclockwise)
Preceding gene: 89256926
Following gene: 89256923
Centisome position: 83.34
GC content: 36.07
Gene sequence:
>804_bases ATGAAAGATTTAGCACTTCAAATAAAAGATTTAAACGTGGGTTTCAAGACAGATGAGGGCATGTTTTCTGCGGTTAGAGA TATCAGCTTTGATCTTAAAAAAGGTCACACTCTTGGTATTGTCGGAGAATCTGGCTCTGGTAAGAGTCAAACGGTATTGT CACTTATGGGGTTGCTTGCAGGTAATGCAGTTGTATCTGGGCAAGCTTTGTTTCATGATCAAAATCTTATAAATATGCCA ACCAAGAATTTAAATAAAATTCGCGGTGATAAAATAGCAATGATCTTTCAGGATCTAATGACTTCTTTAAATCCGTATTT AACTATTCACAAGCAGCTCTTAGAGCCTTTAACAATACATAAGGGTATGTCTCACAAAGATGCGACTAAAAAAGTTTTAG AAATGTTAGATGCGGTGCAAATTCCAGATGCAAAGAATAGACTTAAGCTATATCCACATGAGTTTTCTGGAGGTATGCGC CAAAGAGTTGTAATTGCTATGGCATTACTATATTCACCTGAAATACTAATTGCTGATGAGCCTACTACAGCTCTAGATGT TACAGTCCAAGGTCAGATTTTACAGTTATTATCTGATTTGCAAAAAGAGTTTCACATGTCTATGTTATTTATCACTCATG ATTTGGGTGTGGTAGCTGAGATTTGTCATGATGTAATGGTTATGTATTGTGGCAATATTATGGAGCAGGGTACAGTAGAT AATATCTTTGCAAATGCGCAACATCCGTATACAAAAGTCCTTCTAAATGCTATTCCTATTGCAGATCCACAACTAACTAG GTAA
Upstream 100 bases:
>100_bases GGTCTATCCATCTGCTTTTTTAACTATAACACTTCTAGCTCTAAATTTTGTTGGTAATGCAATGAGACAAGCACTAGATC TAAAGAGTAAGAGGTAGATA
Downstream 100 bases:
>100_bases CGAACAATTGAAATAGAAAAATCAGAATTACCTTCTCCTCTTAATCCACCTAAAGGTTGTGCATTTCATACAAGATGCAA GATAGCTACAGATATCTGTA
Product: oligopeptide transporter, subunit D, ABC transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MKDLALQIKDLNVGFKTDEGMFSAVRDISFDLKKGHTLGIVGESGSGKSQTVLSLMGLLAGNAVVSGQALFHDQNLINMP TKNLNKIRGDKIAMIFQDLMTSLNPYLTIHKQLLEPLTIHKGMSHKDATKKVLEMLDAVQIPDAKNRLKLYPHEFSGGMR QRVVIAMALLYSPEILIADEPTTALDVTVQGQILQLLSDLQKEFHMSMLFITHDLGVVAEICHDVMVMYCGNIMEQGTVD NIFANAQHPYTKVLLNAIPIADPQLTR
Sequences:
>Translated_267_residues MKDLALQIKDLNVGFKTDEGMFSAVRDISFDLKKGHTLGIVGESGSGKSQTVLSLMGLLAGNAVVSGQALFHDQNLINMP TKNLNKIRGDKIAMIFQDLMTSLNPYLTIHKQLLEPLTIHKGMSHKDATKKVLEMLDAVQIPDAKNRLKLYPHEFSGGMR QRVVIAMALLYSPEILIADEPTTALDVTVQGQILQLLSDLQKEFHMSMLFITHDLGVVAEICHDVMVMYCGNIMEQGTVD NIFANAQHPYTKVLLNAIPIADPQLTR >Mature_267_residues MKDLALQIKDLNVGFKTDEGMFSAVRDISFDLKKGHTLGIVGESGSGKSQTVLSLMGLLAGNAVVSGQALFHDQNLINMP TKNLNKIRGDKIAMIFQDLMTSLNPYLTIHKQLLEPLTIHKGMSHKDATKKVLEMLDAVQIPDAKNRLKLYPHEFSGGMR QRVVIAMALLYSPEILIADEPTTALDVTVQGQILQLLSDLQKEFHMSMLFITHDLGVVAEICHDVMVMYCGNIMEQGTVD NIFANAQHPYTKVLLNAIPIADPQLTR
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=223, Percent_Identity=25.1121076233184, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI42490749, Length=245, Percent_Identity=29.3877551020408, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI6005701, Length=231, Percent_Identity=25.1082251082251, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI153792144, Length=244, Percent_Identity=25.8196721311475, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI116734710, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27436953, Length=224, Percent_Identity=25.4464285714286, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27262624, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI27262626, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9665248, Length=236, Percent_Identity=27.1186440677966, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI11967971, Length=183, Percent_Identity=28.4153005464481, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI9961250, Length=251, Percent_Identity=28.2868525896414, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=251, Percent_Identity=27.4900398406374, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=251, Percent_Identity=27.4900398406374, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI11967969, Length=225, Percent_Identity=28, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI255708477, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592956, Length=267, Percent_Identity=26.5917602996255, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592964, Length=267, Percent_Identity=26.5917602996255, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592971, Length=267, Percent_Identity=26.5917602996255, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592915, Length=267, Percent_Identity=26.5917602996255, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592978, Length=267, Percent_Identity=26.5917602996255, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592898, Length=267, Percent_Identity=26.5917602996255, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI48994883, Length=260, Percent_Identity=56.5384615384615, Blast_Score=312, Evalue=2e-86, Organism=Escherichia coli, GI1788506, Length=265, Percent_Identity=50.9433962264151, Blast_Score=263, Evalue=9e-72, Organism=Escherichia coli, GI145693107, Length=261, Percent_Identity=51.7241379310345, Blast_Score=263, Evalue=1e-71, Organism=Escherichia coli, GI1789963, Length=255, Percent_Identity=46.2745098039216, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI1787759, Length=261, Percent_Identity=41.3793103448276, Blast_Score=212, Evalue=3e-56, Organism=Escherichia coli, GI1787500, Length=277, Percent_Identity=41.1552346570397, Blast_Score=207, Evalue=4e-55, Organism=Escherichia coli, GI1789962, Length=270, Percent_Identity=40.7407407407407, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI1787548, Length=260, Percent_Identity=33.8461538461538, Blast_Score=167, Evalue=7e-43, Organism=Escherichia coli, GI1787758, Length=275, Percent_Identity=35.6363636363636, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI1789890, Length=251, Percent_Identity=38.2470119521912, Blast_Score=154, Evalue=4e-39, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=32.5670498084291, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=32.7586206896552, Blast_Score=134, Evalue=4e-33, Organism=Escherichia coli, GI1789891, Length=254, Percent_Identity=33.4645669291339, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1786398, Length=255, Percent_Identity=31.7647058823529, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=31.404958677686, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1788225, Length=262, Percent_Identity=29.3893129770992, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=30.8641975308642, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788761, Length=257, Percent_Identity=29.1828793774319, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=34.4186046511628, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=30.4347826086957, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87082267, Length=229, Percent_Identity=30.1310043668122, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788644, Length=200, Percent_Identity=31.5, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787105, Length=215, Percent_Identity=30.2325581395349, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=31.6279069767442, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=30.3030303030303, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790162, Length=242, Percent_Identity=25.6198347107438, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=28.0334728033473, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=28.6343612334802, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1786872, Length=243, Percent_Identity=31.2757201646091, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=28.6290322580645, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=26.1467889908257, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=26.3157894736842, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=213, Percent_Identity=26.7605633802817, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=247, Percent_Identity=25.5060728744939, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=28.110599078341, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790739, Length=254, Percent_Identity=26.3779527559055, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788472, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789586, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788165, Length=225, Percent_Identity=28, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=28.8372093023256, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786345, Length=218, Percent_Identity=27.9816513761468, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=225, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788053, Length=206, Percent_Identity=27.1844660194175, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787143, Length=234, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787112, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=26.6968325791855, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789864, Length=235, Percent_Identity=22.9787234042553, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=207, Percent_Identity=29.4685990338164, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193209708, Length=253, Percent_Identity=29.6442687747036, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212646699, Length=247, Percent_Identity=28.3400809716599, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565586, Length=238, Percent_Identity=24.7899159663866, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI25146777, Length=217, Percent_Identity=29.9539170506912, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17558664, Length=218, Percent_Identity=30.2752293577982, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211015, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211017, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI32566680, Length=252, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533608, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996809, Length=247, Percent_Identity=27.9352226720648, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71983510, Length=255, Percent_Identity=22.3529411764706, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983523, Length=255, Percent_Identity=22.3529411764706, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983516, Length=255, Percent_Identity=22.3529411764706, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193202349, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=254, Percent_Identity=25.5905511811024, Blast_Score=75, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6319856, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574744, Length=208, Percent_Identity=29.3269230769231, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI161076682, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI161076684, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24581617, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24581615, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI85725262, Length=213, Percent_Identity=26.7605633802817, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24659289, Length=236, Percent_Identity=24.5762711864407, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45551502, Length=243, Percent_Identity=29.2181069958848, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI45551501, Length=243, Percent_Identity=29.2181069958848, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI281363262, Length=250, Percent_Identity=30.4, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24653245, Length=250, Percent_Identity=30.4, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 29537; Mature: 29537
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLALQIKDLNVGFKTDEGMFSAVRDISFDLKKGHTLGIVGESGSGKSQTVLSLMGLLA CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH GNAVVSGQALFHDQNLINMPTKNLNKIRGDKIAMIFQDLMTSLNPYLTIHKQLLEPLTIH CCCEECCHHEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KGMSHKDATKKVLEMLDAVQIPDAKNRLKLYPHEFSGGMRQRVVIAMALLYSPEILIADE CCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCHHHHHHHHHHHHHCCCEEEECC PTTALDVTVQGQILQLLSDLQKEFHMSMLFITHDLGVVAEICHDVMVMYCGNIMEQGTVD CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH NIFANAQHPYTKVLLNAIPIADPQLTR HHHCCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKDLALQIKDLNVGFKTDEGMFSAVRDISFDLKKGHTLGIVGESGSGKSQTVLSLMGLLA CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH GNAVVSGQALFHDQNLINMPTKNLNKIRGDKIAMIFQDLMTSLNPYLTIHKQLLEPLTIH CCCEECCHHEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KGMSHKDATKKVLEMLDAVQIPDAKNRLKLYPHEFSGGMRQRVVIAMALLYSPEILIADE CCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCHHHHHHHHHHHHHCCCEEEECC PTTALDVTVQGQILQLLSDLQKEFHMSMLFITHDLGVVAEICHDVMVMYCGNIMEQGTVD CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH NIFANAQHPYTKVLLNAIPIADPQLTR HHHCCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]