| Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
|---|---|
| Accession | NC_007880 |
| Length | 1,895,994 |
Click here to switch to the map view.
The map label for this gene is lptD [H]
Identifier: 89256874
GI number: 89256874
Start: 1524455
End: 1527061
Strand: Reverse
Name: lptD [H]
Synonym: FTL_1597
Alternate gene names: 89256874
Gene position: 1527061-1524455 (Counterclockwise)
Preceding gene: 89256876
Following gene: 89256873
Centisome position: 80.54
GC content: 32.8
Gene sequence:
>2607_bases ATGTTAAAGGGGATTCATAAGTATCTATTGATGTGTTTTGGTACTGTATTGTTTACAGTGCAAGCCAATGCTGCACGGAT AATGAGCAATAATCCTATTAAAGAAGATTGGCAATGTAAGGTAGTTGATGGTGAGTGGAGTTGTAAACGAGCAAAGAAAC CAAAAAGTGTCTTTGATAAAAAGCTTACTAAAACTGAAAAAGAAAAAGCTCTTGCTGATGATCTGGCATGGGTTAAGAAA CCATCATATTTTGTTGGTGGATACTATAGCAATGATAATCAGTTTACCAAAGCTTTGTGTGAGTCTAAAAAGACAGATCT TAGTTATGAGAAGTCTGAGTTTGACAATTATGGTACATTAATAGCGTCAGGAAATGTCCAGGTGCTACAATGTGATCAGG AATTGTATGGTAATAATGCAATAATAAATTTAAATAGTAATAATAGTGCTATAAGATCATTAGTGATGGCTGGAGATGTA ATCGTTAAGCAACCATCGACAGGTATAGTCATCCGTACTACAGAGTTAGATGCTGATATGAATAATGGTACTTATAGTAC TGGTGAAGCATATTTTAGATTGGCGCGTGAAATGCCAAAAACTAGAATATATGATAAAGAACATTTTAGTGGCTACTTGC GTGGTTATGCTAAAACATTCAAAAAAGAGTCATCAGGAGATATAGTACTTTCTGATGGATATATTACTTCTGGCGATCCG TATGATAATGCTTGGAAGATTACTGGTAATAATATAGATATTGATACCAACACTCATATGGCGTATGTCAAAAATGGTTA TTTTGAGATTCAGGATATTCCAGTAATGTATATACCATATTTTTCACATCCAATAGATGATAGAAGAAGATCTGGTTTCT TATATCCAGGTTTTTTACAAAATGCTAACTCTGGTATTGGGATATCTGTACCTTATTATTTTAACCTTGCGCCTAATTAT GATTTGATGTTACAAAGTGTTATATGGTCTCAAAGAGGTATCATCGAAAATGGTACTTTCCGTTACATGACTAAATATTT CCAGGGTCAATTTGAGGGTTCATTAGTACCTTATGATTTTAAAGAAGGAAAAATGCGCAGCTCTTTTACTTTGTCAACTA CAGGTCAGTATGAAAATATAAACACAAATTTTAAGTATGAATATGTTAGTGACCAAAACTATTATAATGATTTCTCAGCA GGAAATGTTAATTTAGTTACTAAGACATTACTGGATAGAGAATTCGATCTAACTTACACTAATGACTATGTTGATTCTGG GTTAACAGTATTAGACTATGGTGTAGTAAACCCTTTATTAACCGTTGATAACACACCTTATGCTAAGCTACCTGAAGTTA AGTTAAATCTTACGTCGGATGGTTATACACCAGATTATTTGACTTTAAGTGCTCAAACTCTTAATACATTTTTTTATAAA ACTGCTGGGCCAGCTAATACTAATCCTGGTGCTCCTCAAGGAACAAATGTTAATGCATTTAGAGCTTATGAATCTCCAAA AATAGCATTCAACTTTAATAAAACATGGGGGTATCTAAAACCTTCATTAGAATTACCTATACGTTACTATAAGCTTAATA ATAAGCCTACAGATATTATTAAGTTTAAAAATAGTAATGTTACTAGTGTACTACCAATATTTAATATTGACGCTGGGGCA TATTTTGATAAAGATTATACTAATGAAAATGGGACGTATACATCAACCTTACATCCTAGACTATTCTATACTTACATACC GTACCAAGATCAAACAAATATACCATTATTTGATACAAGTTTACAAAATGAACAATATATGCAGATGTTTCAAGTAAATA GATTTACTGGTTATGATAGAATAAACAATGCTAATCAGCTAACATATGCGATAGAAGCTTCAACAACTAATCAAGATAAT GGTACTACTTTAGCGTCTGCTAAAATTGGTCAGATGGCTTATTTTGCTGATAGGAAAGTTAATTTGTGTCAAGGAAATTC TGCTTGTCCGAATCCGGGTTTAATGGATCCTTTTTCAACAGATACTTTCTCTCCAATTATGAGCTCATTTGAGTTTCAAG TAATGAAAAATATTTACTTATCAGCTCAAGTGAATTATAGGGTTAAGCAACAAAACGTTGACTATCAAGTCTATCAATTG TCATATAAAGATGAAAATGAGAATATTTTTAACGTTTCATATAATAATATTGCAAATAACTGGAACTCATTGACTCAACA GCAAATAGCAGAAGGTGCTAAGCCTCAACCACAAGAAACTATTACTCTTTCTACAGTGTTAAATATTACTGATCATTGGG GTATTGCAGCGCTATGGAACTATAATTTCCAGCAAAAACAAATAGCTAATATATTTGCAGGGCTGCAATACAATGCCAAA TCTTGGGCGGTTAGAGCATTATGGCAGAAGACCGCGTATACTAACCAAGATCCTAATAATCCAACATTACTTGGCCCACT AGTTAATACTTATATGTTTGAATTTGAACTAAAAGGTCTAGGAGGTATTGGCAATACTAGTGATATATCTTCACGTTTAC AACAAATAAATGGTTATCAAGTAGGAGAGTGGGGAAACGGTATATAA
Upstream 100 bases:
>100_bases ATCTAGAGTTTAAATTAGAATGGAAATATTTCTCAAATATATATATAATATCACGGTTATTTTAAAAAACTCAATAAATT AAGGCTTTCAAAGGTCAATT
Downstream 100 bases:
>100_bases TGAAGAAGCTAATAACAATCTTTTTGTTGATGCTAATGTTAAATAATGCTTATTCAGATATCTCTTCATCTATGTTTCAA AATGCTTTTAACTCGGGTAT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MLKGIHKYLLMCFGTVLFTVQANAARIMSNNPIKEDWQCKVVDGEWSCKRAKKPKSVFDKKLTKTEKEKALADDLAWVKK PSYFVGGYYSNDNQFTKALCESKKTDLSYEKSEFDNYGTLIASGNVQVLQCDQELYGNNAIINLNSNNSAIRSLVMAGDV IVKQPSTGIVIRTTELDADMNNGTYSTGEAYFRLAREMPKTRIYDKEHFSGYLRGYAKTFKKESSGDIVLSDGYITSGDP YDNAWKITGNNIDIDTNTHMAYVKNGYFEIQDIPVMYIPYFSHPIDDRRRSGFLYPGFLQNANSGIGISVPYYFNLAPNY DLMLQSVIWSQRGIIENGTFRYMTKYFQGQFEGSLVPYDFKEGKMRSSFTLSTTGQYENINTNFKYEYVSDQNYYNDFSA GNVNLVTKTLLDREFDLTYTNDYVDSGLTVLDYGVVNPLLTVDNTPYAKLPEVKLNLTSDGYTPDYLTLSAQTLNTFFYK TAGPANTNPGAPQGTNVNAFRAYESPKIAFNFNKTWGYLKPSLELPIRYYKLNNKPTDIIKFKNSNVTSVLPIFNIDAGA YFDKDYTNENGTYTSTLHPRLFYTYIPYQDQTNIPLFDTSLQNEQYMQMFQVNRFTGYDRINNANQLTYAIEASTTNQDN GTTLASAKIGQMAYFADRKVNLCQGNSACPNPGLMDPFSTDTFSPIMSSFEFQVMKNIYLSAQVNYRVKQQNVDYQVYQL SYKDENENIFNVSYNNIANNWNSLTQQQIAEGAKPQPQETITLSTVLNITDHWGIAALWNYNFQQKQIANIFAGLQYNAK SWAVRALWQKTAYTNQDPNNPTLLGPLVNTYMFEFELKGLGGIGNTSDISSRLQQINGYQVGEWGNGI
Sequences:
>Translated_868_residues MLKGIHKYLLMCFGTVLFTVQANAARIMSNNPIKEDWQCKVVDGEWSCKRAKKPKSVFDKKLTKTEKEKALADDLAWVKK PSYFVGGYYSNDNQFTKALCESKKTDLSYEKSEFDNYGTLIASGNVQVLQCDQELYGNNAIINLNSNNSAIRSLVMAGDV IVKQPSTGIVIRTTELDADMNNGTYSTGEAYFRLAREMPKTRIYDKEHFSGYLRGYAKTFKKESSGDIVLSDGYITSGDP YDNAWKITGNNIDIDTNTHMAYVKNGYFEIQDIPVMYIPYFSHPIDDRRRSGFLYPGFLQNANSGIGISVPYYFNLAPNY DLMLQSVIWSQRGIIENGTFRYMTKYFQGQFEGSLVPYDFKEGKMRSSFTLSTTGQYENINTNFKYEYVSDQNYYNDFSA GNVNLVTKTLLDREFDLTYTNDYVDSGLTVLDYGVVNPLLTVDNTPYAKLPEVKLNLTSDGYTPDYLTLSAQTLNTFFYK TAGPANTNPGAPQGTNVNAFRAYESPKIAFNFNKTWGYLKPSLELPIRYYKLNNKPTDIIKFKNSNVTSVLPIFNIDAGA YFDKDYTNENGTYTSTLHPRLFYTYIPYQDQTNIPLFDTSLQNEQYMQMFQVNRFTGYDRINNANQLTYAIEASTTNQDN GTTLASAKIGQMAYFADRKVNLCQGNSACPNPGLMDPFSTDTFSPIMSSFEFQVMKNIYLSAQVNYRVKQQNVDYQVYQL SYKDENENIFNVSYNNIANNWNSLTQQQIAEGAKPQPQETITLSTVLNITDHWGIAALWNYNFQQKQIANIFAGLQYNAK SWAVRALWQKTAYTNQDPNNPTLLGPLVNTYMFEFELKGLGGIGNTSDISSRLQQINGYQVGEWGNGI >Mature_868_residues MLKGIHKYLLMCFGTVLFTVQANAARIMSNNPIKEDWQCKVVDGEWSCKRAKKPKSVFDKKLTKTEKEKALADDLAWVKK PSYFVGGYYSNDNQFTKALCESKKTDLSYEKSEFDNYGTLIASGNVQVLQCDQELYGNNAIINLNSNNSAIRSLVMAGDV IVKQPSTGIVIRTTELDADMNNGTYSTGEAYFRLAREMPKTRIYDKEHFSGYLRGYAKTFKKESSGDIVLSDGYITSGDP YDNAWKITGNNIDIDTNTHMAYVKNGYFEIQDIPVMYIPYFSHPIDDRRRSGFLYPGFLQNANSGIGISVPYYFNLAPNY DLMLQSVIWSQRGIIENGTFRYMTKYFQGQFEGSLVPYDFKEGKMRSSFTLSTTGQYENINTNFKYEYVSDQNYYNDFSA GNVNLVTKTLLDREFDLTYTNDYVDSGLTVLDYGVVNPLLTVDNTPYAKLPEVKLNLTSDGYTPDYLTLSAQTLNTFFYK TAGPANTNPGAPQGTNVNAFRAYESPKIAFNFNKTWGYLKPSLELPIRYYKLNNKPTDIIKFKNSNVTSVLPIFNIDAGA YFDKDYTNENGTYTSTLHPRLFYTYIPYQDQTNIPLFDTSLQNEQYMQMFQVNRFTGYDRINNANQLTYAIEASTTNQDN GTTLASAKIGQMAYFADRKVNLCQGNSACPNPGLMDPFSTDTFSPIMSSFEFQVMKNIYLSAQVNYRVKQQNVDYQVYQL SYKDENENIFNVSYNNIANNWNSLTQQQIAEGAKPQPQETITLSTVLNITDHWGIAALWNYNFQQKQIANIFAGLQYNAK SWAVRALWQKTAYTNQDPNNPTLLGPLVNTYMFEFELKGLGGIGNTSDISSRLQQINGYQVGEWGNGI
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=663, Percent_Identity=23.5294117647059, Blast_Score=163, Evalue=3e-41,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 98611; Mature: 98611
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS00214 FABP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKGIHKYLLMCFGTVLFTVQANAARIMSNNPIKEDWQCKVVDGEWSCKRAKKPKSVFDK CCCHHHHHHHHHHHHHHEEEECCCEEEECCCCCCCCCEEEEECCCCCCHHCCCCHHHHHH KLTKTEKEKALADDLAWVKKPSYFVGGYYSNDNQFTKALCESKKTDLSYEKSEFDNYGTL HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHCCCCCCEE IASGNVQVLQCDQELYGNNAIINLNSNNSAIRSLVMAGDVIVKQPSTGIVIRTTELDADM EECCCEEEEEECHHHHCCCEEEEECCCCHHHHHHHHHCCEEEECCCCCEEEEEEEECCCC NNGTYSTGEAYFRLAREMPKTRIYDKEHFSGYLRGYAKTFKKESSGDIVLSDGYITSGDP CCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCC YDNAWKITGNNIDIDTNTHMAYVKNGYFEIQDIPVMYIPYFSHPIDDRRRSGFLYPGFLQ CCCEEEEECCEEEECCCCEEEEEECCEEEEECCCEEEEECCCCCCCCHHHCCCCCCHHHC NANSGIGISVPYYFNLAPNYDLMLQSVIWSQRGIIENGTFRYMTKYFQGQFEGSLVPYDF CCCCCCEEECCEEEECCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCC KEGKMRSSFTLSTTGQYENINTNFKYEYVSDQNYYNDFSAGNVNLVTKTLLDREFDLTYT CCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHCCCCCEEEC NDYVDSGLTVLDYGVVNPLLTVDNTPYAKLPEVKLNLTSDGYTPDYLTLSAQTLNTFFYK CHHHHCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEHHHHEEEEEE TAGPANTNPGAPQGTNVNAFRAYESPKIAFNFNKTWGYLKPSLELPIRYYKLNNKPTDII CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCEECCCCCCCEEEEEECCCCCEEE KFKNSNVTSVLPIFNIDAGAYFDKDYTNENGTYTSTLHPRLFYTYIPYQDQTNIPLFDTS EECCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCEEECC LQNEQYMQMFQVNRFTGYDRINNANQLTYAIEASTTNQDNGTTLASAKIGQMAYFADRKV CCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEHHHCCEEEECCCCE NLCQGNSACPNPGLMDPFSTDTFSPIMSSFEFQVMKNIYLSAQVNYRVKQQNVDYQVYQL EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCCEEEEEE SYKDENENIFNVSYNNIANNWNSLTQQQIAEGAKPQPQETITLSTVLNITDHWGIAALWN EEECCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCEEEEEE YNFQQKQIANIFAGLQYNAKSWAVRALWQKTAYTNQDPNNPTLLGPLVNTYMFEFELKGL CCCCHHHHHHHHHCCEECCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHEEEEEEEEECC GGIGNTSDISSRLQQINGYQVGEWGNGI CCCCCHHHHHHHHHHHCCEEECCCCCCC >Mature Secondary Structure MLKGIHKYLLMCFGTVLFTVQANAARIMSNNPIKEDWQCKVVDGEWSCKRAKKPKSVFDK CCCHHHHHHHHHHHHHHEEEECCCEEEECCCCCCCCCEEEEECCCCCCHHCCCCHHHHHH KLTKTEKEKALADDLAWVKKPSYFVGGYYSNDNQFTKALCESKKTDLSYEKSEFDNYGTL HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHCCCCCCEE IASGNVQVLQCDQELYGNNAIINLNSNNSAIRSLVMAGDVIVKQPSTGIVIRTTELDADM EECCCEEEEEECHHHHCCCEEEEECCCCHHHHHHHHHCCEEEECCCCCEEEEEEEECCCC NNGTYSTGEAYFRLAREMPKTRIYDKEHFSGYLRGYAKTFKKESSGDIVLSDGYITSGDP CCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCC YDNAWKITGNNIDIDTNTHMAYVKNGYFEIQDIPVMYIPYFSHPIDDRRRSGFLYPGFLQ CCCEEEEECCEEEECCCCEEEEEECCEEEEECCCEEEEECCCCCCCCHHHCCCCCCHHHC NANSGIGISVPYYFNLAPNYDLMLQSVIWSQRGIIENGTFRYMTKYFQGQFEGSLVPYDF CCCCCCEEECCEEEECCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCC KEGKMRSSFTLSTTGQYENINTNFKYEYVSDQNYYNDFSAGNVNLVTKTLLDREFDLTYT CCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHCCCCCEEEC NDYVDSGLTVLDYGVVNPLLTVDNTPYAKLPEVKLNLTSDGYTPDYLTLSAQTLNTFFYK CHHHHCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEHHHHEEEEEE TAGPANTNPGAPQGTNVNAFRAYESPKIAFNFNKTWGYLKPSLELPIRYYKLNNKPTDII CCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCEECCCCCCCEEEEEECCCCCEEE KFKNSNVTSVLPIFNIDAGAYFDKDYTNENGTYTSTLHPRLFYTYIPYQDQTNIPLFDTS EECCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCEEECC LQNEQYMQMFQVNRFTGYDRINNANQLTYAIEASTTNQDNGTTLASAKIGQMAYFADRKV CCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEHHHCCEEEECCCCE NLCQGNSACPNPGLMDPFSTDTFSPIMSSFEFQVMKNIYLSAQVNYRVKQQNVDYQVYQL EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCCEEEEEE SYKDENENIFNVSYNNIANNWNSLTQQQIAEGAKPQPQETITLSTVLNITDHWGIAALWN EEECCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCEEEEEE YNFQQKQIANIFAGLQYNAKSWAVRALWQKTAYTNQDPNNPTLLGPLVNTYMFEFELKGL CCCCHHHHHHHHHCCEECCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHEEEEEEEEECC GGIGNTSDISSRLQQINGYQVGEWGNGI CCCCCHHHHHHHHHHHCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA