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The map label for this gene is fimZ [H]

Identifier: 51596249

GI number: 51596249

Start: 2260330

End: 2260962

Strand: Reverse

Name: fimZ [H]

Synonym: YPTB1923

Alternate gene names: 51596249

Gene position: 2260962-2260330 (Counterclockwise)

Preceding gene: 51596250

Following gene: 51596248

Centisome position: 47.65

GC content: 40.28

Gene sequence:

>633_bases
ATGACAAAATCAGTGATGATAGTTGATGACCACCCAGCTATTCGTGTCGCTATCCATGCATTGCTATCACAAAGCAAAGA
GTTTTCGACGATCAGTGAATCCGTTGATGGCAGTGAAGCATTGGAAAAACTAAAAAATAATCCCGTTGATCTGGTTATTA
TCGATATTGAGCTTCCTAATTTTGATGGTTTCTCGTTGCTAAAAAAATTGCAGCAACGTGGTTTTACCGGCAAATCACTG
TTCCTGTCAGCCAAGAATGAGCAAGTTTTTGCAGTGCGGGCATTACAAGCTGGCGCTAATGGATTTATCAGTAAGAATAA
AGATATTAGTGAAATACTTTTTGCGGCGCAAAACGTATTACGTGGTTACTCTTTCTTCCCATCAGAAACGTTGACCCAAT
TAGCTGGGCAACCTTCCAGCCATGATCCTGTCAATAGGGCGCGGTTGTTGTCAGAGCGGGAAATTAACGTTTTGCGTTAT
CTGGTAAATGGTCTGTCAAATAAACAGATTGCCGATGAAATGTTTATCAGCAATAAAACTGTGAGTACCTATAAAACCCG
AATTTTGACCAAATTGGGACTCAGTTCTGTCATTGAATTAGCCGATTATGCACACACCCATAATTTGGTGTAA

Upstream 100 bases:

>100_bases
TTTACTTCACCTTGGGTAAACATTTAGCGTCTCTTGGTGCACGCGAGGAGCAGTAAGTTCACTCTGCGAATCCCAAGATA
TAACGGTTTACGGAGAGTAC

Downstream 100 bases:

>100_bases
TTCACTGCGTACTACATTTCTTTTACGTGCCCGATTTCTTTTACGTGCCCGGTTTTCTTTACGTAGCTGGTTTTTTTTGC
GTACCGTACTCTGCTGCCTG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSL
FLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRY
LVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV

Sequences:

>Translated_210_residues
MTKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSL
FLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRY
LVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV
>Mature_209_residues
TKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPNFDGFSLLKKLQQRGFTGKSLF
LSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYL
VNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=48.3091787439614, Blast_Score=202, Evalue=1e-53,
Organism=Escherichia coli, GI1788712, Length=204, Percent_Identity=35.7843137254902, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788222, Length=207, Percent_Identity=28.0193236714976, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1788521, Length=198, Percent_Identity=32.3232323232323, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787473, Length=212, Percent_Identity=27.3584905660377, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787229, Length=120, Percent_Identity=25.8333333333333, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23250; Mature: 23119

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPN
CCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCC
FDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVL
CCHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
RGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKT
HCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
VSTYKTRILTKLGLSSVIELADYAHTHNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPN
CCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCC
FDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVL
CCHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
RGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKT
HCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
VSTYKTRILTKLGLSSVIELADYAHTHNLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]