BacMap

Definition	Campylobacter jejuni RM1221, complete genome.
Accession	NC_003912
Length	1,777,831

Click here to switch to the map view.

The map label for this gene is yejF [H]

Identifier: 57238594

GI number: 57238594

Start: 1651733

End: 1652443

Strand: Reverse

Name: yejF [H]

Synonym: CJE1752

Alternate gene names: 57238594

Gene position: 1652443-1651733 (Counterclockwise)

Preceding gene: 57238595

Following gene: 57238593

Centisome position: 92.95

GC content: 27.57

Gene sequence:

>711_bases
TTGAAGGTAAGAAATTTAAATATCAGTTTGAAGAATAATTTATTGCTTAAGGATATTAATTTAGATATAAAAACAGGCAA
AACTTTAATGATACTAGGACAAAGTGGAGTGGGCAAAAGTTTGTTGGGAAAAGCTTTGGTAAGACTTTTAGATTCTAATT
TCACAATAAGTTTTGATGAATTAAGTTTTCATAATTCTTGTATTTTTAATTTTAACAAAGAAGAGCTTAGAAATTTTCGT
TCTAAGGTGGCACTTGTTTTGCAAGATGCAGAGCTTAGTCTTTATCCTTATTTGGATATTGGAAATTTATGTCATCTTGT
TTTAAAAACTCATACAAAATTAAAACAAAAAGAAAGAAAAGATTACGCTTTTTCTTATTTTCAAAAATTAGGATTTGAAA
ATCTTGATCGTTTGTGGCATTCTTATGCTAATGAATTAAGTTTGGGTATGGCAAGAAGGGTGAGCCTAGCTTTGGCATTA
TTAAATCAACCCCAAATTTTAATTTGTGATGAAATCACAGCTTCTTTGGATAAAGAAAACGCTTCAAAGATCATATCGAT
TTTAGAAGAATTAAAAAATACTGCAGCCTTAGTTTGTATCACTCATGATTTAAATTTGGTAAATTCTTTAGCAGATGAAA
TTCTTATGCTAGAAAAAAATAGTTCAAATTTATATAGCTTAGATGAGTTTTTAAGGTATTATAATGCTTAA

Upstream 100 bases:

>100_bases
CTTGGTGGATGATACTTTTTCCACTTTTAAGCTTGCTTTTGTTGTTTTTACCTCTTTTATGGTTGGGTAATTTTTTACAA
AAAATTTGGGGTATAAGATC

Downstream 100 bases:

>100_bases
AGTTTGTAATTTAAGTAAGTTTTATGAGCTTAAAAAGCATTGGTATTTAAAAAAAGAAAGACATATTATTTTTGATAATG
TCAATTTTTCTTTAAATGAA

Product: peptide ABC transporter ATP-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGKALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFR
SKVALVLQDAELSLYPYLDIGNLCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
LNQPQILICDEITASLDKENASKIISILEELKNTAALVCITHDLNLVNSLADEILMLEKNSSNLYSLDEFLRYYNA

Sequences:

>Translated_236_residues
MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGKALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFR
SKVALVLQDAELSLYPYLDIGNLCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
LNQPQILICDEITASLDKENASKIISILEELKNTAALVCITHDLNLVNSLADEILMLEKNSSNLYSLDEFLRYYNA
>Mature_236_residues
MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGKALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFR
SKVALVLQDAELSLYPYLDIGNLCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
LNQPQILICDEITASLDKENASKIISILEELKNTAALVCITHDLNLVNSLADEILMLEKNSSNLYSLDEFLRYYNA

Specific function: Unknown

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI9961250, Length=212, Percent_Identity=30.188679245283, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4505771, Length=212, Percent_Identity=30.188679245283, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI9961252, Length=212, Percent_Identity=30.188679245283, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI89111135, Length=222, Percent_Identity=28.8288288288288, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI46592956, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592915, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592898, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592978, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592971, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592964, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI255708477, Length=212, Percent_Identity=27.8301886792453, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1788506, Length=212, Percent_Identity=32.0754716981132, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI48994883, Length=212, Percent_Identity=32.5471698113208, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789963, Length=202, Percent_Identity=32.6732673267327, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787500, Length=222, Percent_Identity=28.3783783783784, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789962, Length=206, Percent_Identity=28.6407766990291, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787759, Length=210, Percent_Identity=27.1428571428571, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693107, Length=235, Percent_Identity=25.9574468085106, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=25.3333333333333, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787548, Length=227, Percent_Identity=26.8722466960352, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=209, Percent_Identity=33.4928229665072, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1789032, Length=225, Percent_Identity=29.7777777777778, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=25.2212389380531, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787547, Length=208, Percent_Identity=25.4807692307692, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787143, Length=205, Percent_Identity=30.7317073170732, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787758, Length=203, Percent_Identity=27.0935960591133, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789890, Length=219, Percent_Identity=26.9406392694064, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=26.1261261261261, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=28.1938325991189, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=208, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786703, Length=198, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790162, Length=225, Percent_Identity=25.7777777777778, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789586, Length=217, Percent_Identity=24.8847926267281, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1788644, Length=151, Percent_Identity=25.8278145695364, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=207, Percent_Identity=25.1207729468599, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787112, Length=208, Percent_Identity=28.3653846153846, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87081791, Length=224, Percent_Identity=25, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788450, Length=212, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=28.7037037037037, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=215, Percent_Identity=25.1162790697674, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=210, Percent_Identity=27.1428571428571, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=210, Percent_Identity=27.1428571428571, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=211, Percent_Identity=26.0663507109005, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=211, Percent_Identity=27.0142180094787, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=213, Percent_Identity=27.2300469483568, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=229, Percent_Identity=26.2008733624454, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=212, Percent_Identity=26.8867924528302, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28574744, Length=183, Percent_Identity=30.0546448087432, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI17136662, Length=231, Percent_Identity=25.974025974026, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 26906; Mature: 26906

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGKALVRLLDSNFTISFDE
CCEEEEEEEECCCEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
LSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGNLCHLVLKTHTKLKQKERK
CCCCCCEEEECCHHHHHHHHHHHHEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
DYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALALLNQPQILICDEITASLDKEN
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCH
ASKIISILEELKNTAALVCITHDLNLVNSLADEILMLEKNSSNLYSLDEFLRYYNA
HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGKALVRLLDSNFTISFDE
CCEEEEEEEECCCEEEEECCEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
LSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGNLCHLVLKTHTKLKQKERK
CCCCCCEEEECCHHHHHHHHHHHHEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
DYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALALLNQPQILICDEITASLDKEN
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCH
ASKIISILEELKNTAALVCITHDLNLVNSLADEILMLEKNSSNLYSLDEFLRYYNA
HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097040 [H]