| Definition | Campylobacter jejuni RM1221, complete genome. |
|---|---|
| Accession | NC_003912 |
| Length | 1,777,831 |
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The map label for this gene is dppF [C]
Identifier: 57238593
GI number: 57238593
Start: 1651075
End: 1651740
Strand: Reverse
Name: dppF [C]
Synonym: CJE1751
Alternate gene names: 57238593
Gene position: 1651740-1651075 (Counterclockwise)
Preceding gene: 57238594
Following gene: 57238592
Centisome position: 92.91
GC content: 24.77
Gene sequence:
>666_bases ATGCTTAAAGTTTGTAATTTAAGTAAGTTTTATGAGCTTAAAAAGCATTGGTATTTAAAAAAAGAAAGACATATTATTTT TGATAATGTCAATTTTTCTTTAAATGAAAATGACAATTTAATAATTTTAGGTAAAAGTGGTGCAGGTAAAAGCACATTAG CTAGAATTCTTTGTTTTTTAGAAGATCCAAGTGAAGGTGAGGTATGGTATGAAAATCTTAACTTGCACAAGCTTGATAAA AACAAACAAAGACTTTTAAGAAAGCAAATTCAGTATTGCTTTCAAGATCAAAAAATGGCTTTAAACCCTTATAAAAAAAT CAGAAATCTTATACAAGATGGTTTGGAAAATTTTAATTTACAAAAGAATGATAACTTGATTTTAGAATTTTTTGATTTTT TTAGTCTAAAAAAACAAATTTTAGAACAAAAGCCCTATGAGTTAAGCGGAGGAGAAGCCACACGTGTAGGTCTTATCCGT GCTTTGGTTTTAAATCCTAAATTGTTGATTTTAGATGAAATTACTTCAGCGCTTGATATTAAAACTTCTAAAGAAATTTT AACTTTTTTATATGACTATCAGCAAAAAAATAATATTTCTTATATATTTATAAGCCATCAAAGTGATCTTTTTTATAAAT TTAATCATAAAAAATTAAAACTTTAA
Upstream 100 bases:
>100_bases CATGATTTAAATTTGGTAAATTCTTTAGCAGATGAAATTCTTATGCTAGAAAAAAATAGTTCAAATTTATATAGCTTAGA TGAGTTTTTAAGGTATTATA
Downstream 100 bases:
>100_bases AAAATATTTTTTAATATAAGTTTCAATATAGAAAGTTTAGAGTAAAATAAAGAAAAGTGTAAATTTAATTTTTGTTGTGG AGTGATTAAAGTGCTTTAAA
Product: peptide ABC transporter ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 221
Protein sequence:
>221_residues MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILGKSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDK NKQRLLRKQIQYCFQDQKMALNPYKKIRNLIQDGLENFNLQKNDNLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIR ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIFISHQSDLFYKFNHKKLKL
Sequences:
>Translated_221_residues MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILGKSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDK NKQRLLRKQIQYCFQDQKMALNPYKKIRNLIQDGLENFNLQKNDNLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIR ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIFISHQSDLFYKFNHKKLKL >Mature_221_residues MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILGKSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDK NKQRLLRKQIQYCFQDQKMALNPYKKIRNLIQDGLENFNLQKNDNLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIR ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIFISHQSDLFYKFNHKKLKL
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI255708477, Length=167, Percent_Identity=29.940119760479, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4505771, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=167, Percent_Identity=28.7425149700599, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI27262624, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI27262626, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789962, Length=209, Percent_Identity=33.9712918660287, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=33.6363636363636, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=32.3943661971831, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI1788506, Length=227, Percent_Identity=30.8370044052863, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI145693107, Length=222, Percent_Identity=31.5315315315315, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1787547, Length=213, Percent_Identity=30.5164319248826, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1786698, Length=213, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787758, Length=211, Percent_Identity=28.436018957346, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=30.8755760368664, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1789873, Length=196, Percent_Identity=29.0816326530612, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789032, Length=192, Percent_Identity=31.7708333333333, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1789963, Length=203, Percent_Identity=28.0788177339901, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=28.4313725490196, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87081791, Length=208, Percent_Identity=29.8076923076923, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI48994883, Length=193, Percent_Identity=33.160621761658, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=29.3577981651376, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787029, Length=202, Percent_Identity=27.7227722772277, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=27.6041666666667, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1787089, Length=194, Percent_Identity=29.8969072164948, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787370, Length=189, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994997, Length=217, Percent_Identity=26.7281105990783, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787712, Length=202, Percent_Identity=28.7128712871287, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789672, Length=185, Percent_Identity=24.3243243243243, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788761, Length=190, Percent_Identity=25.2631578947368, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1787164, Length=182, Percent_Identity=28.021978021978, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1787548, Length=208, Percent_Identity=25.4807692307692, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI87082267, Length=200, Percent_Identity=25, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788450, Length=211, Percent_Identity=24.1706161137441, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1786653, Length=180, Percent_Identity=31.6666666666667, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786253, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788225, Length=191, Percent_Identity=26.1780104712042, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788644, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787182, Length=202, Percent_Identity=30.6930693069307, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1786563, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787759, Length=191, Percent_Identity=25.6544502617801, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1788053, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1786981, Length=185, Percent_Identity=30.8108108108108, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1786319, Length=183, Percent_Identity=26.775956284153, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787105, Length=197, Percent_Identity=23.3502538071066, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787143, Length=193, Percent_Identity=27.4611398963731, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1790467, Length=187, Percent_Identity=25.1336898395722, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790190, Length=191, Percent_Identity=26.7015706806283, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI2367384, Length=208, Percent_Identity=27.4038461538462, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17558664, Length=193, Percent_Identity=31.0880829015544, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI25146777, Length=202, Percent_Identity=30.6930693069307, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=29.4797687861272, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17541710, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI212646699, Length=195, Percent_Identity=28.7179487179487, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71996809, Length=193, Percent_Identity=27.979274611399, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211017, Length=193, Percent_Identity=27.4611398963731, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211015, Length=193, Percent_Identity=27.4611398963731, Blast_Score=64, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322640, Length=179, Percent_Identity=30.1675977653631, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357907, Length=172, Percent_Identity=30.8139534883721, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85726357, Length=168, Percent_Identity=27.9761904761905, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24641565, Length=197, Percent_Identity=25.8883248730964, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 26217; Mature: 26217
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILGKSGAGKSTLARILCFL CCEECCHHHHHHHHHHHCEECCCEEEEECCEEEECCCCCEEEEECCCCCHHHHHHHHHHC EDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALNPYKKIRNLIQDGLENFNL CCCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC QKNDNLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIRALVLNPKLLILDEITSALDI CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHCC KTSKEILTFLYDYQQKNNISYIFISHQSDLFYKFNHKKLKL CCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCEECC >Mature Secondary Structure MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILGKSGAGKSTLARILCFL CCEECCHHHHHHHHHHHCEECCCEEEEECCEEEECCCCCEEEEECCCCCHHHHHHHHHHC EDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALNPYKKIRNLIQDGLENFNL CCCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC QKNDNLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIRALVLNPKLLILDEITSALDI CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHCC KTSKEILTFLYDYQQKNNISYIFISHQSDLFYKFNHKKLKL CCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]