Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 159184746

GI number: 159184746

Start: 1399662

End: 1400417

Strand: Reverse

Name: ydfH [C]

Synonym: Atu1405

Alternate gene names: 159184746

Gene position: 1400417-1399662 (Counterclockwise)

Preceding gene: 15888736

Following gene: 15888730

Centisome position: 49.28

GC content: 60.19

Gene sequence:

>756_bases
ATGGCACGCAAGCAGACGAAACCCGAACTGGTAACGGACGGGGAAAAGCCGAAGCGGGCAAACCGCGTCAACTTCTTCGA
TCTCGCTTATGAGCGCATCGAGGAACTGCTGATCAATTGCGAGCTGAAGCCCGGCCGGCAACTGACATTGCAGGAATTGC
AGGACGCCACGGGGCTGGGCCGGACGCCGGTTCATAATGCCGTCAGCCGTCTTGCCGCCGATACGCTGCTGGTCGTGCTG
CCCCGCCACGGACTCAGAGTCGCGCCGATCGATCTGGCGCGTGAACGCCTGCTGCTACAGCTTCGCCGGGACATGGAGCG
CTTCGTCATGCGGCTTGCGGTGGAGCGGGCAAGCCTCTCCCATCGCAATCAGATGCTGCATATCGAACGCGCCCTGCGTG
AACGACGGGAGCAGATCACGCTCAGCGAATTCAACCTGCTCGACCGTCGGATCGACCAGATTTTGCTGGCGGCGGCGAAC
GAACCTTTCCTCGAACATACCCTGCGGCCGCTGCACACGATCTATCGGCGCATCGGCTTCATTCACCACACGGTGACACA
TGGAAAATCCGACCTGACGCAGACGGTCGATTGCCATCTTTCGGTCCTGAATGCCGTCGCGAACCGCCATCTGGACACGG
CGCTTGCCGCAACGGACGCCTTGGTCGGCTTCGTCGACTCCATGTTCGATGAAATGGAGACGGGCATAGACCCTCGCCTG
CTGGATTGCAGCATCGAACCGATTTTCAAGATTTGA

Upstream 100 bases:

>100_bases
AGTCTCGATCAGGACAATAATGTTGCTTGTAAAATTTCACAACATGTTTTATAGCAATTTATGTACTGAGTTTGTTGACC
GCGACGGGAGGAGACCGGAG

Downstream 100 bases:

>100_bases
GACAGCGGCGCCATTGGATGTCCGACATCCGTCCGCAACGAAGAAAGATTTCTGAAATACATATTTTGCAATGACTTATG
GCGCTCGGGAGGCGCCAATA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator GntR; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MARKQTKPELVTDGEKPKRANRVNFFDLAYERIEELLINCELKPGRQLTLQELQDATGLGRTPVHNAVSRLAADTLLVVL
PRHGLRVAPIDLARERLLLQLRRDMERFVMRLAVERASLSHRNQMLHIERALRERREQITLSEFNLLDRRIDQILLAAAN
EPFLEHTLRPLHTIYRRIGFIHHTVTHGKSDLTQTVDCHLSVLNAVANRHLDTALAATDALVGFVDSMFDEMETGIDPRL
LDCSIEPIFKI

Sequences:

>Translated_251_residues
MARKQTKPELVTDGEKPKRANRVNFFDLAYERIEELLINCELKPGRQLTLQELQDATGLGRTPVHNAVSRLAADTLLVVL
PRHGLRVAPIDLARERLLLQLRRDMERFVMRLAVERASLSHRNQMLHIERALRERREQITLSEFNLLDRRIDQILLAAAN
EPFLEHTLRPLHTIYRRIGFIHHTVTHGKSDLTQTVDCHLSVLNAVANRHLDTALAATDALVGFVDSMFDEMETGIDPRL
LDCSIEPIFKI
>Mature_250_residues
ARKQTKPELVTDGEKPKRANRVNFFDLAYERIEELLINCELKPGRQLTLQELQDATGLGRTPVHNAVSRLAADTLLVVLP
RHGLRVAPIDLARERLLLQLRRDMERFVMRLAVERASLSHRNQMLHIERALRERREQITLSEFNLLDRRIDQILLAAANE
PFLEHTLRPLHTIYRRIGFIHHTVTHGKSDLTQTVDCHLSVLNAVANRHLDTALAATDALVGFVDSMFDEMETGIDPRLL
DCSIEPIFKI

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28796; Mature: 28665

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKQTKPELVTDGEKPKRANRVNFFDLAYERIEELLINCELKPGRQLTLQELQDATGLG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
RTPVHNAVSRLAADTLLVVLPRHGLRVAPIDLARERLLLQLRRDMERFVMRLAVERASLS
CCHHHHHHHHHHHHHHHEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRNQMLHIERALRERREQITLSEFNLLDRRIDQILLAAANEPFLEHTLRPLHTIYRRIGF
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IHHTVTHGKSDLTQTVDCHLSVLNAVANRHLDTALAATDALVGFVDSMFDEMETGIDPRL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LDCSIEPIFKI
ECCCCCHHHCC
>Mature Secondary Structure 
ARKQTKPELVTDGEKPKRANRVNFFDLAYERIEELLINCELKPGRQLTLQELQDATGLG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
RTPVHNAVSRLAADTLLVVLPRHGLRVAPIDLARERLLLQLRRDMERFVMRLAVERASLS
CCHHHHHHHHHHHHHHHEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRNQMLHIERALRERREQITLSEFNLLDRRIDQILLAAANEPFLEHTLRPLHTIYRRIGF
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IHHTVTHGKSDLTQTVDCHLSVLNAVANRHLDTALAATDALVGFVDSMFDEMETGIDPRL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LDCSIEPIFKI
ECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA