| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is cshA [H]
Identifier: 15889136
GI number: 15889136
Start: 1816064
End: 1817575
Strand: Direct
Name: cshA [H]
Synonym: Atu1833
Alternate gene names: 15889136
Gene position: 1816064-1817575 (Clockwise)
Preceding gene: 15889135
Following gene: 15889137
Centisome position: 63.91
GC content: 59.79
Gene sequence:
>1512_bases TTGACAACATTCTCTGATCTTGGCCTGAGCCAAAAAGTTCTTTCCGCTATTGCAGATGCCGGCTACACGACGCCGACACC CATTCAGGCCGGCGCCATTCCGCCCGCGCTGGAAAAGCGTGATATCTGCGGTATCGCACAGACCGGCACCGGCAAAACCG CGTCCTTCGTTCTGCCGATGCTGACGCTGCTCGAAAAGGGCCGCGCACGCGCCAGAATGCCGCGCACGCTGATCCTGGAG CCGACCCGCGAGCTTGCAGCGCAGGTGGCGGAGAACTTCGAAAAATACGGCAAGAATCACAAGCTGAACGTTGCCCTGCT CATCGGTGGTGTTTCCTTCGAAGACCAGGATCGCAAGCTCGAGCGTGGCGCCGATGTGCTGATCTGCACCCCCGGCCGCC TTCTCGACCATTGCGAGCGTGGCAAGCTGCTGATGACCGGCGTGGAAATTCTCGTCATCGACGAAGCCGACCGCATGCTC GACATGGGCTTCATCCCCGATATCGAGCGTATCGCCAAAATGATCCCCTTCACCCGGCAGACGCTGTTCTTCTCGGCCAC CATGCCGCCGGAAATCCAGAAGCTGGCTGACCGGTTCCTGCAGAACCCGACGCGGATCGAGGTCGCCAAGCCATCCTCTA CCGCAAAGACGGTAACGCAGCGTATCGTCGCCGCGCATAATAAGGACTATGAAAAGCGCGCCGTGCTGCGCGATCTGGTC CGTGCCGAAGAAGCGGAACTCAAGAACGCCATCATCTTCTGCAATCGCAAGAAGGATGTCGCCGATCTGTTCCGTTCGCT GGATCGTCACGGCTTTTCCGTTGGCGCACTGCATGGTGACATGGATCAGCGCTCGCGCACGACGATGCTGCAGAACTTCC GGGATGGACAGCTGACGCTGCTGGTCGCTTCCGACGTTGCAGCCCGCGGGCTTGATATCCCTGATGTCAGCCACGTCTTC AACTTCGATGTTCCCATCCATGCCGAAGACTATGTCCACCGCATCGGCCGCACCGGTCGTGCCGGCCGTTCGGGCAAGGC CTTCACTCTCGTCACCAAGAGCGACGCGAAATATCTCGACGCGATTGAAAAGCTGATTGCCGAAAAGATCGAATGGCTGA GCGGCGATCTGTCCTCCCTCCCCGCGCCCATGGAAAGCTTTGAAAGCAATTCCGGCCGCCGGGGCACCAAGGAACGTAGC GGCAGAGGCCGCGACAGAAACCGTCGCGATGCACCTGCATCGCCGGTGGAAAACATCAATCAGGACGCACAATCCGTAGT GGATACGGACATCGCGGCTCACGGAGAAGACAAGGTGAAGGCAGAACGCAGACCGGAAAAGACCCCGCGCAATTCCGAGC GCAACAGCCGCAACCTGAACTCGCTGCACGCCAATGACGACAACCGCGACCGTCGCCGTCATTATCGTGACCACGACGAT GGCCCGACACCGGTTGGTTTCGGCGACGACATTCCCGCCTTCATGCTGATCGTGGCTAACGCCAAGGCCTGA
Upstream 100 bases:
>100_bases ACTTTCCGGCAATTTGGGCCTATCCCCGCGCCAAGTCTTTGCAAGTGCCGCAGCGGCACGCAGGTATTCTTACCGAACCA GAACGGAAAAAGTTCTTCCT
Downstream 100 bases:
>100_bases CCATCGCGATGGACAATATGACATCGACCATCAAGCCCGGCCTCGATTTCCCGGGCGTTGGCGTGGGCCTTGTCATATTG CGCGAAGGCCGCCTGCTTTT
Product: ATP-dependent RNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MTTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLILE PTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRML DMGFIPDIERIAKMIPFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLV RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVAARGLDIPDVSHVF NFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERS GRGRDRNRRDAPASPVENINQDAQSVVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNSLHANDDNRDRRRHYRDHDD GPTPVGFGDDIPAFMLIVANAKA
Sequences:
>Translated_503_residues MTTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLILE PTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRML DMGFIPDIERIAKMIPFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLV RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVAARGLDIPDVSHVF NFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERS GRGRDRNRRDAPASPVENINQDAQSVVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNSLHANDDNRDRRRHYRDHDD GPTPVGFGDDIPAFMLIVANAKA >Mature_502_residues TTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRARARMPRTLILEP TRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLD MGFIPDIERIAKMIPFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVR AEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVAARGLDIPDVSHVFN FDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSG RGRDRNRRDAPASPVENINQDAQSVVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNSLHANDDNRDRRRHYRDHDDG PTPVGFGDDIPAFMLIVANAKA
Specific function: May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. Unwinds dsRNA in both 5'- and 3'-directions and shows RNA-dependent ATPase activity [H]
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm, nucleoid [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI301171467, Length=428, Percent_Identity=39.7196261682243, Blast_Score=279, Evalue=5e-75, Organism=Homo sapiens, GI301171475, Length=396, Percent_Identity=41.4141414141414, Blast_Score=277, Evalue=1e-74, Organism=Homo sapiens, GI87196351, Length=396, Percent_Identity=41.4141414141414, Blast_Score=277, Evalue=2e-74, Organism=Homo sapiens, GI20149629, Length=374, Percent_Identity=41.4438502673797, Blast_Score=275, Evalue=5e-74, Organism=Homo sapiens, GI41327771, Length=428, Percent_Identity=36.9158878504673, Blast_Score=275, Evalue=6e-74, Organism=Homo sapiens, GI169881239, Length=396, Percent_Identity=40.9090909090909, Blast_Score=274, Evalue=2e-73, Organism=Homo sapiens, GI13514809, Length=396, Percent_Identity=40.9090909090909, Blast_Score=274, Evalue=2e-73, Organism=Homo sapiens, GI45446747, Length=435, Percent_Identity=35.4022988505747, Blast_Score=271, Evalue=8e-73, Organism=Homo sapiens, GI45446743, Length=435, Percent_Identity=35.4022988505747, Blast_Score=271, Evalue=8e-73, Organism=Homo sapiens, GI148613856, Length=384, Percent_Identity=41.1458333333333, Blast_Score=268, Evalue=6e-72, Organism=Homo sapiens, GI38201710, Length=384, Percent_Identity=41.1458333333333, Blast_Score=268, Evalue=6e-72, Organism=Homo sapiens, GI41327773, Length=395, Percent_Identity=36.9620253164557, Blast_Score=266, Evalue=5e-71, Organism=Homo sapiens, GI224593278, Length=364, Percent_Identity=39.5604395604396, Blast_Score=256, Evalue=5e-68, Organism=Homo sapiens, GI4758138, Length=373, Percent_Identity=39.4101876675603, Blast_Score=255, Evalue=6e-68, Organism=Homo sapiens, GI7661920, Length=378, Percent_Identity=35.978835978836, Blast_Score=249, Evalue=5e-66, Organism=Homo sapiens, GI31542656, Length=380, Percent_Identity=40.2631578947368, Blast_Score=247, Evalue=2e-65, Organism=Homo sapiens, GI222352149, Length=412, Percent_Identity=36.1650485436893, Blast_Score=246, Evalue=4e-65, Organism=Homo sapiens, GI41327776, Length=369, Percent_Identity=39.0243902439024, Blast_Score=241, Evalue=1e-63, Organism=Homo sapiens, GI216548263, Length=361, Percent_Identity=38.5041551246537, Blast_Score=240, Evalue=3e-63, Organism=Homo sapiens, GI262231852, Length=361, Percent_Identity=38.5041551246537, Blast_Score=240, Evalue=3e-63, Organism=Homo sapiens, GI13518015, Length=361, Percent_Identity=38.5041551246537, Blast_Score=240, Evalue=3e-63, Organism=Homo sapiens, GI262118318, Length=361, Percent_Identity=38.5041551246537, Blast_Score=239, Evalue=3e-63, Organism=Homo sapiens, GI21071032, Length=415, Percent_Identity=36.144578313253, Blast_Score=238, Evalue=8e-63, Organism=Homo sapiens, GI13129006, Length=374, Percent_Identity=36.3636363636364, Blast_Score=232, Evalue=7e-61, Organism=Homo sapiens, GI50659095, Length=374, Percent_Identity=36.6310160427808, Blast_Score=229, Evalue=6e-60, Organism=Homo sapiens, GI13514831, Length=380, Percent_Identity=36.8421052631579, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI55749865, Length=392, Percent_Identity=34.6938775510204, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI164664518, Length=369, Percent_Identity=35.5013550135501, Blast_Score=219, Evalue=5e-57, Organism=Homo sapiens, GI51094101, Length=358, Percent_Identity=35.7541899441341, Blast_Score=215, Evalue=8e-56, Organism=Homo sapiens, GI164419743, Length=358, Percent_Identity=35.7541899441341, Blast_Score=215, Evalue=9e-56, Organism=Homo sapiens, GI83700235, Length=378, Percent_Identity=34.6560846560847, Blast_Score=207, Evalue=3e-53, Organism=Homo sapiens, GI6005743, Length=390, Percent_Identity=34.6153846153846, Blast_Score=206, Evalue=5e-53, Organism=Homo sapiens, GI8922886, Length=390, Percent_Identity=34.8717948717949, Blast_Score=206, Evalue=5e-53, Organism=Homo sapiens, GI4503529, Length=379, Percent_Identity=34.5646437994723, Blast_Score=206, Evalue=6e-53, Organism=Homo sapiens, GI188035877, Length=363, Percent_Identity=33.6088154269972, Blast_Score=205, Evalue=7e-53, Organism=Homo sapiens, GI38327634, Length=360, Percent_Identity=35.5555555555556, Blast_Score=197, Evalue=1e-50, Organism=Homo sapiens, GI62241022, Length=372, Percent_Identity=35.2150537634409, Blast_Score=197, Evalue=2e-50, Organism=Homo sapiens, GI4758112, Length=365, Percent_Identity=32.8767123287671, Blast_Score=189, Evalue=4e-48, Organism=Homo sapiens, GI18375623, Length=365, Percent_Identity=32.8767123287671, Blast_Score=189, Evalue=4e-48, Organism=Homo sapiens, GI62241024, Length=351, Percent_Identity=35.3276353276353, Blast_Score=189, Evalue=6e-48, Organism=Homo sapiens, GI21040371, Length=365, Percent_Identity=32.6027397260274, Blast_Score=187, Evalue=2e-47, Organism=Homo sapiens, GI41327779, Length=371, Percent_Identity=33.6927223719677, Blast_Score=187, Evalue=3e-47, Organism=Homo sapiens, GI164419732, Length=389, Percent_Identity=32.9048843187661, Blast_Score=186, Evalue=4e-47, Organism=Homo sapiens, GI38569503, Length=379, Percent_Identity=29.5514511873351, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI38569505, Length=379, Percent_Identity=29.5514511873351, Blast_Score=172, Evalue=5e-43, Organism=Homo sapiens, GI4826686, Length=339, Percent_Identity=35.3982300884956, Blast_Score=164, Evalue=1e-40, Organism=Homo sapiens, GI9506931, Length=398, Percent_Identity=29.3969849246231, Blast_Score=163, Evalue=4e-40, Organism=Homo sapiens, GI256223453, Length=394, Percent_Identity=29.4416243654822, Blast_Score=153, Evalue=3e-37, Organism=Homo sapiens, GI256773275, Length=412, Percent_Identity=31.7961165048544, Blast_Score=143, Evalue=3e-34, Organism=Homo sapiens, GI154759257, Length=399, Percent_Identity=28.3208020050125, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI9966805, Length=324, Percent_Identity=31.1728395061728, Blast_Score=135, Evalue=6e-32, Organism=Homo sapiens, GI17505907, Length=214, Percent_Identity=36.4485981308411, Blast_Score=115, Evalue=8e-26, Organism=Homo sapiens, GI20336298, Length=214, Percent_Identity=36.4485981308411, Blast_Score=114, Evalue=2e-25, Organism=Escherichia coli, GI1787016, Length=371, Percent_Identity=46.0916442048518, Blast_Score=311, Evalue=9e-86, Organism=Escherichia coli, GI87082221, Length=381, Percent_Identity=43.3070866141732, Blast_Score=300, Evalue=1e-82, Organism=Escherichia coli, GI1790214, Length=415, Percent_Identity=39.2771084337349, Blast_Score=266, Evalue=2e-72, Organism=Escherichia coli, GI1788930, Length=373, Percent_Identity=42.627345844504, Blast_Score=255, Evalue=5e-69, Organism=Escherichia coli, GI1787605, Length=409, Percent_Identity=36.919315403423, Blast_Score=237, Evalue=1e-63, Organism=Escherichia coli, GI48994977, Length=353, Percent_Identity=23.7960339943343, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI32565321, Length=414, Percent_Identity=37.9227053140097, Blast_Score=272, Evalue=2e-73, Organism=Caenorhabditis elegans, GI71995718, Length=398, Percent_Identity=39.4472361809045, Blast_Score=264, Evalue=7e-71, Organism=Caenorhabditis elegans, GI17510309, Length=391, Percent_Identity=39.386189258312, Blast_Score=261, Evalue=6e-70, Organism=Caenorhabditis elegans, GI17510307, Length=391, Percent_Identity=39.386189258312, Blast_Score=261, Evalue=7e-70, Organism=Caenorhabditis elegans, GI71995514, Length=391, Percent_Identity=39.386189258312, Blast_Score=261, Evalue=9e-70, Organism=Caenorhabditis elegans, GI71987143, Length=378, Percent_Identity=37.3015873015873, Blast_Score=259, Evalue=2e-69, Organism=Caenorhabditis elegans, GI115533224, Length=399, Percent_Identity=38.8471177944862, Blast_Score=258, Evalue=4e-69, Organism=Caenorhabditis elegans, GI17555296, Length=371, Percent_Identity=38.544474393531, Blast_Score=257, Evalue=1e-68, Organism=Caenorhabditis elegans, GI86570094, Length=362, Percent_Identity=39.7790055248619, Blast_Score=256, Evalue=1e-68, Organism=Caenorhabditis elegans, GI71995724, Length=378, Percent_Identity=36.2433862433862, Blast_Score=249, Evalue=2e-66, Organism=Caenorhabditis elegans, GI17552642, Length=407, Percent_Identity=37.1007371007371, Blast_Score=249, Evalue=2e-66, Organism=Caenorhabditis elegans, GI17507121, Length=378, Percent_Identity=35.978835978836, Blast_Score=248, Evalue=4e-66, Organism=Caenorhabditis elegans, GI17510559, Length=389, Percent_Identity=37.2750642673522, Blast_Score=244, Evalue=9e-65, Organism=Caenorhabditis elegans, GI17507945, Length=380, Percent_Identity=39.2105263157895, Blast_Score=233, Evalue=1e-61, Organism=Caenorhabditis elegans, GI71999644, Length=371, Percent_Identity=35.0404312668464, Blast_Score=226, Evalue=3e-59, Organism=Caenorhabditis elegans, GI71999646, Length=371, Percent_Identity=35.0404312668464, Blast_Score=225, Evalue=3e-59, Organism=Caenorhabditis elegans, GI17507877, Length=399, Percent_Identity=34.3358395989975, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI17537549, Length=411, Percent_Identity=33.0900243309002, Blast_Score=218, Evalue=4e-57, Organism=Caenorhabditis elegans, GI17552114, Length=368, Percent_Identity=34.2391304347826, Blast_Score=214, Evalue=7e-56, Organism=Caenorhabditis elegans, GI115532548, Length=386, Percent_Identity=36.5284974093264, Blast_Score=214, Evalue=8e-56, Organism=Caenorhabditis elegans, GI17507881, Length=373, Percent_Identity=35.1206434316354, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI115532546, Length=393, Percent_Identity=35.8778625954198, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI17507879, Length=413, Percent_Identity=32.4455205811138, Blast_Score=209, Evalue=2e-54, Organism=Caenorhabditis elegans, GI17509811, Length=358, Percent_Identity=34.3575418994413, Blast_Score=207, Evalue=9e-54, Organism=Caenorhabditis elegans, GI71982858, Length=365, Percent_Identity=34.2465753424658, Blast_Score=200, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17505370, Length=402, Percent_Identity=32.089552238806, Blast_Score=198, Evalue=7e-51, Organism=Caenorhabditis elegans, GI17508543, Length=380, Percent_Identity=31.8421052631579, Blast_Score=181, Evalue=1e-45, Organism=Caenorhabditis elegans, GI17556951, Length=358, Percent_Identity=30.1675977653631, Blast_Score=167, Evalue=1e-41, Organism=Caenorhabditis elegans, GI193208216, Length=372, Percent_Identity=31.4516129032258, Blast_Score=167, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17536099, Length=398, Percent_Identity=31.1557788944724, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17536101, Length=398, Percent_Identity=31.1557788944724, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17536103, Length=398, Percent_Identity=31.1557788944724, Blast_Score=164, Evalue=7e-41, Organism=Caenorhabditis elegans, GI193206561, Length=395, Percent_Identity=30.379746835443, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI17553716, Length=365, Percent_Identity=29.041095890411, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI25148203, Length=413, Percent_Identity=27.6029055690073, Blast_Score=159, Evalue=3e-39, Organism=Caenorhabditis elegans, GI17507641, Length=387, Percent_Identity=29.7157622739018, Blast_Score=156, Evalue=3e-38, Organism=Caenorhabditis elegans, GI71990816, Length=382, Percent_Identity=30.3664921465969, Blast_Score=152, Evalue=4e-37, Organism=Caenorhabditis elegans, GI32564046, Length=374, Percent_Identity=29.144385026738, Blast_Score=146, Evalue=3e-35, Organism=Caenorhabditis elegans, GI25148291, Length=350, Percent_Identity=29.1428571428571, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI71997889, Length=483, Percent_Identity=26.9151138716356, Blast_Score=132, Evalue=6e-31, Organism=Caenorhabditis elegans, GI71982862, Length=212, Percent_Identity=33.4905660377358, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI25148205, Length=339, Percent_Identity=26.2536873156342, Blast_Score=114, Evalue=9e-26, Organism=Caenorhabditis elegans, GI71987152, Length=109, Percent_Identity=44.954128440367, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17557982, Length=391, Percent_Identity=23.5294117647059, Blast_Score=89, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6321856, Length=417, Percent_Identity=39.568345323741, Blast_Score=278, Evalue=1e-75, Organism=Saccharomyces cerevisiae, GI6324778, Length=424, Percent_Identity=38.6792452830189, Blast_Score=275, Evalue=9e-75, Organism=Saccharomyces cerevisiae, GI6324217, Length=363, Percent_Identity=41.5977961432507, Blast_Score=274, Evalue=3e-74, Organism=Saccharomyces cerevisiae, GI6325138, Length=393, Percent_Identity=39.6946564885496, Blast_Score=267, Evalue=2e-72, Organism=Saccharomyces cerevisiae, GI6323021, Length=355, Percent_Identity=38.8732394366197, Blast_Score=254, Evalue=3e-68, Organism=Saccharomyces cerevisiae, GI6321360, Length=407, Percent_Identity=36.8550368550369, Blast_Score=251, Evalue=3e-67, Organism=Saccharomyces cerevisiae, GI6320224, Length=382, Percent_Identity=34.2931937172775, Blast_Score=232, Evalue=1e-61, Organism=Saccharomyces cerevisiae, GI6320173, Length=419, Percent_Identity=32.6968973747017, Blast_Score=229, Evalue=1e-60, Organism=Saccharomyces cerevisiae, GI6320041, Length=368, Percent_Identity=36.6847826086957, Blast_Score=227, Evalue=3e-60, Organism=Saccharomyces cerevisiae, GI6322912, Length=377, Percent_Identity=35.2785145888594, Blast_Score=225, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6322323, Length=377, Percent_Identity=35.2785145888594, Blast_Score=225, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6320449, Length=365, Percent_Identity=36.1643835616438, Blast_Score=224, Evalue=2e-59, Organism=Saccharomyces cerevisiae, GI6321963, Length=380, Percent_Identity=37.3684210526316, Blast_Score=215, Evalue=1e-56, Organism=Saccharomyces cerevisiae, GI6323947, Length=366, Percent_Identity=37.1584699453552, Blast_Score=211, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6319714, Length=377, Percent_Identity=32.6259946949602, Blast_Score=194, Evalue=3e-50, Organism=Saccharomyces cerevisiae, GI6322427, Length=385, Percent_Identity=34.5454545454545, Blast_Score=194, Evalue=3e-50, Organism=Saccharomyces cerevisiae, GI6324620, Length=376, Percent_Identity=33.7765957446808, Blast_Score=191, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6321111, Length=353, Percent_Identity=32.8611898016997, Blast_Score=169, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6321267, Length=389, Percent_Identity=32.3907455012853, Blast_Score=168, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6319618, Length=407, Percent_Identity=29.4840294840295, Blast_Score=162, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6320400, Length=385, Percent_Identity=29.0909090909091, Blast_Score=160, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6320119, Length=377, Percent_Identity=29.973474801061, Blast_Score=160, Evalue=4e-40, Organism=Saccharomyces cerevisiae, GI6322876, Length=483, Percent_Identity=26.9151138716356, Blast_Score=147, Evalue=4e-36, Organism=Saccharomyces cerevisiae, GI6323306, Length=417, Percent_Identity=26.8585131894484, Blast_Score=137, Evalue=5e-33, Organism=Saccharomyces cerevisiae, GI6324366, Length=419, Percent_Identity=27.9236276849642, Blast_Score=127, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6321374, Length=435, Percent_Identity=26.8965517241379, Blast_Score=122, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6323844, Length=353, Percent_Identity=22.3796033994334, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574962, Length=379, Percent_Identity=39.0501319261214, Blast_Score=278, Evalue=7e-75, Organism=Drosophila melanogaster, GI17985987, Length=414, Percent_Identity=40.5797101449275, Blast_Score=278, Evalue=9e-75, Organism=Drosophila melanogaster, GI24662330, Length=412, Percent_Identity=37.621359223301, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI24584994, Length=399, Percent_Identity=35.8395989974937, Blast_Score=265, Evalue=6e-71, Organism=Drosophila melanogaster, GI24644483, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=3e-70, Organism=Drosophila melanogaster, GI24642151, Length=392, Percent_Identity=37.5, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI24644479, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI24644487, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI45551833, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI24644485, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI281361218, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI24644481, Length=382, Percent_Identity=38.2198952879581, Blast_Score=262, Evalue=4e-70, Organism=Drosophila melanogaster, GI24585582, Length=374, Percent_Identity=37.9679144385027, Blast_Score=260, Evalue=1e-69, Organism=Drosophila melanogaster, GI21355075, Length=359, Percent_Identity=38.7186629526462, Blast_Score=253, Evalue=2e-67, Organism=Drosophila melanogaster, GI18857967, Length=419, Percent_Identity=37.2315035799523, Blast_Score=253, Evalue=2e-67, Organism=Drosophila melanogaster, GI21356161, Length=367, Percent_Identity=38.6920980926431, Blast_Score=249, Evalue=4e-66, Organism=Drosophila melanogaster, GI24584399, Length=356, Percent_Identity=38.7640449438202, Blast_Score=248, Evalue=8e-66, Organism=Drosophila melanogaster, GI24645031, Length=378, Percent_Identity=35.4497354497354, Blast_Score=242, Evalue=5e-64, Organism=Drosophila melanogaster, GI17977678, Length=363, Percent_Identity=37.465564738292, Blast_Score=235, Evalue=5e-62, Organism=Drosophila melanogaster, GI24582080, Length=377, Percent_Identity=36.3395225464191, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI24582078, Length=377, Percent_Identity=36.3395225464191, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI17136248, Length=377, Percent_Identity=36.3395225464191, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI24582075, Length=377, Percent_Identity=36.3395225464191, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI281365720, Length=310, Percent_Identity=38.7096774193548, Blast_Score=220, Evalue=2e-57, Organism=Drosophila melanogaster, GI28575014, Length=357, Percent_Identity=33.3333333333333, Blast_Score=215, Evalue=7e-56, Organism=Drosophila melanogaster, GI24642822, Length=375, Percent_Identity=34.4, Blast_Score=211, Evalue=8e-55, Organism=Drosophila melanogaster, GI24583279, Length=368, Percent_Identity=33.1521739130435, Blast_Score=205, Evalue=5e-53, Organism=Drosophila melanogaster, GI24583281, Length=368, Percent_Identity=33.1521739130435, Blast_Score=205, Evalue=6e-53, Organism=Drosophila melanogaster, GI28571808, Length=370, Percent_Identity=34.0540540540541, Blast_Score=201, Evalue=1e-51, Organism=Drosophila melanogaster, GI28571809, Length=370, Percent_Identity=34.0540540540541, Blast_Score=201, Evalue=1e-51, Organism=Drosophila melanogaster, GI17136814, Length=375, Percent_Identity=36.5333333333333, Blast_Score=201, Evalue=1e-51, Organism=Drosophila melanogaster, GI24581954, Length=365, Percent_Identity=32.3287671232877, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI24581952, Length=365, Percent_Identity=32.3287671232877, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI24581956, Length=365, Percent_Identity=32.3287671232877, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI21355559, Length=380, Percent_Identity=32.3684210526316, Blast_Score=180, Evalue=2e-45, Organism=Drosophila melanogaster, GI24666101, Length=366, Percent_Identity=33.6065573770492, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24643725, Length=421, Percent_Identity=28.7410926365796, Blast_Score=166, Evalue=3e-41, Organism=Drosophila melanogaster, GI24668515, Length=328, Percent_Identity=32.6219512195122, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI17647335, Length=440, Percent_Identity=28.4090909090909, Blast_Score=158, Evalue=8e-39, Organism=Drosophila melanogaster, GI19920478, Length=365, Percent_Identity=32.0547945205479, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI20130173, Length=322, Percent_Identity=31.6770186335404, Blast_Score=148, Evalue=9e-36, Organism=Drosophila melanogaster, GI17136666, Length=449, Percent_Identity=28.2850779510022, Blast_Score=145, Evalue=6e-35, Organism=Drosophila melanogaster, GI24640164, Length=381, Percent_Identity=24.1469816272966, Blast_Score=128, Evalue=1e-29, Organism=Drosophila melanogaster, GI18859659, Length=206, Percent_Identity=33.0097087378641, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI28571338, Length=206, Percent_Identity=33.0097087378641, Blast_Score=114, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 55880; Mature: 55749
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPM CCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHH LTLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKL HHHHHCCCHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHH ERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQ HCCCCEEEECCCHHHHHHHCCCEEEECCEEEEECCCHHHHHCCCCCCHHHHHHHCCCHHH TLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLV HEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTL HHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCEEE LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLD EEECCHHHCCCCCCCCHHHEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHH AIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAPASPVENIN HHHHHHHHHHHHHCCCHHHCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHH QDAQSVVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNSLHANDDNRDRRRHYRDHDD HHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC GPTPVGFGDDIPAFMLIVANAKA CCCCCCCCCCCHHHHHEEECCCC >Mature Secondary Structure TTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPM CCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHH LTLLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKL HHHHHCCCHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHH ERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQ HCCCCEEEECCCHHHHHHHCCCEEEECCEEEEECCCHHHHHCCCCCCHHHHHHHCCCHHH TLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLV HEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTL HHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCEEE LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLD EEECCHHHCCCCCCCCHHHEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHH AIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAPASPVENIN HHHHHHHHHHHHHCCCHHHCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHH QDAQSVVDTDIAAHGEDKVKAERRPEKTPRNSERNSRNLNSLHANDDNRDRRRHYRDHDD HHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC GPTPVGFGDDIPAFMLIVANAKA CCCCCCCCCCCHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA