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The map label for this gene is yhcC [C]

Identifier: 39995383

GI number: 39995383

Start: 280807

End: 282576

Strand: Direct

Name: yhcC [C]

Synonym: GSU0273

Alternate gene names: 39995383

Gene position: 280807-282576 (Clockwise)

Preceding gene: 39995382

Following gene: 39995384

Centisome position: 7.36

GC content: 63.22

Gene sequence:

>1770_bases
GTGCGGGCCGTGTTGTGCGATTTTTTTACCGGCACGGCTGTCGGCACCTGCGTGGACGATATCCTTGCCAATGCCCCCGA
TGCCGTCGGGTTTTCCGTTTACCTCTGGAACCGGGACGACGCCCGTGCCGTGGCGGATGAGTTGCGGCGCCGCGCACCGG
GTCTGACGCTCTTTGCCGGCGGCCCCGAAGCAACGGCCGATCCGGCGGGACTGCTCACCGGCTCTTCCTTTGATTTCCTC
ATCCAGGGCGAGGGGGAAATCCCTTTTCTCGATGTGATGGGGCGCCTTGAGATCGGTGAACCGGGCCGGGGAGCCGTGGG
TACGGCCTGGCTTGACAACGACACGCTCAAGCACACGCCGGCTCGTCCGATCCGCCTTATTGATACCGCCCCATCGCCCC
TGCTGACGGGGATTATCGATCCGTCCGGCTATCCCGGCATCCTCTGGCAGCTTGCCCGAGGCTGTGATTTCTCCTGCGAA
TACTGTTTTGACGACAAGGGAGAGCGCGGGGTGCGGCGCTACTCCCTGGAGCGGATCGACGCGGAGCTCGACGTGATCGT
CCGCAGTGGCGTTCCTCAGGTGTTTGTCCTTGACTCTACCTTCAACCAGGATCGGGAACGGGCGAAAAAAGTCCTGAAGA
TGATTCGGGCCCGCGCCCGCCATGTCCATTTCCATTTCGAGGTCAGGAGCGAGTTCATCGACCGGGAGATGGCCAAGCTT
TTCGCGGGGATTACCTGTTCCCTTCAGATCGGTCTCCAGAGCGCCGACCCGAAAATCCTGCGCAGAATCAGGCGCCATCT
GGATCCCGACGACTTTCGCGAGCGGATTGGCCTGCTCAACGAAAGCGGGGCGATTTTCGGTTTCGACCTGATCTACGGGC
TTCCCGGCGACTCCCTGGCTGCGTTCCGCCGCAGCCTCGACTTTGCCCTGGAGCTCTACCCGAATCACCTGGACATCTTT
CCCCTGGCGATCCTTCCCGGCACCATCCTCGCCAACCGGGCGTCTTCGGAAGGCCTGGAGCACCTTACCGCGCCTCCCTA
TACCCTTACGGGATCCCCCACCTTTACCCCCTCGGACCTTGAGAGGGCTGCTCGCCTGGCCGAAGCCTGCGATATCTTCT
ATACCCGCGGAAAGGCCGTTGCCTGGTTCAACAGCGTGGCGTCGGCCCTGCGCCTGTCTCCCGCCGCCCTGCTCGACGAG
TTTGCCGCCTGGCTCGATGATACCCGGCAGAAGGGGGAGCGCGGTACCGACCTGGGCGATCAGGATATCTGGCTCATGCA
GCGGGAGTTTCTCGACCGGATTTTCCGCCGCCGCAAGCGGGCGGCGCTTCTTCCCCTGGCCCTCGATCTGGTGGACTACC
ATTACTACTTCGCGGCAGCACTGGTTGCGCCGCCGCCTCCTCTTCCAACCGACCGGGAACTGTCGGGCCGGGATCTGCTC
GGAGCGGTCTTTTCCCTCGCGCCGACGGCCCGGCTTGCCCACTTCTCCTATGAAATCGTCGATATTCTCGAAGCGGGAGA
GGTGGATCTGGCGGCATTCCGCGACTGCTTTGCCCCTTCCGGCTCTTGGGCGGTCATTTATCCCCGGGGAGGAGACGTTT
ACACGGAACCGCTTCTCGAATCATATGCGAAATTTCTGCAGGGGCTCGACGGTACCGGCCAGGCCGGCGCAGCAGCGTCC
CGTGCCGGCCTGACCCGGGCCGAGGCACGGGAATTTCTCGATTTCGCCGCGGCAGAGGGGATCGTTGTCCTTGCGACTCA
GGCGCAGTAG

Upstream 100 bases:

>100_bases
CCTTGTCGCCATTCATCCCTATCCCTCGCCCCAGGCCGTTCCCCTCGCCAATGCCTGTCTTGCGGCATATCTTGCTACCG
ACGAGGAGCTGTCGGCCCGG

Downstream 100 bases:

>100_bases
TTCAAGTGTGAGTTTGCCCTCTTCCCCGTTACGCTCTGTATAAAAAAATCATACAATTTTGTTGCTTTTTCTCGTTTGCG
TGTATTAGTATCGCCGGGAT

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MRAVLCDFFTGTAVGTCVDDILANAPDAVGFSVYLWNRDDARAVADELRRRAPGLTLFAGGPEATADPAGLLTGSSFDFL
IQGEGEIPFLDVMGRLEIGEPGRGAVGTAWLDNDTLKHTPARPIRLIDTAPSPLLTGIIDPSGYPGILWQLARGCDFSCE
YCFDDKGERGVRRYSLERIDAELDVIVRSGVPQVFVLDSTFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKL
FAGITCSLQIGLQSADPKILRRIRRHLDPDDFRERIGLLNESGAIFGFDLIYGLPGDSLAAFRRSLDFALELYPNHLDIF
PLAILPGTILANRASSEGLEHLTAPPYTLTGSPTFTPSDLERAARLAEACDIFYTRGKAVAWFNSVASALRLSPAALLDE
FAAWLDDTRQKGERGTDLGDQDIWLMQREFLDRIFRRRKRAALLPLALDLVDYHYYFAAALVAPPPPLPTDRELSGRDLL
GAVFSLAPTARLAHFSYEIVDILEAGEVDLAAFRDCFAPSGSWAVIYPRGGDVYTEPLLESYAKFLQGLDGTGQAGAAAS
RAGLTRAEAREFLDFAAAEGIVVLATQAQ

Sequences:

>Translated_589_residues
MRAVLCDFFTGTAVGTCVDDILANAPDAVGFSVYLWNRDDARAVADELRRRAPGLTLFAGGPEATADPAGLLTGSSFDFL
IQGEGEIPFLDVMGRLEIGEPGRGAVGTAWLDNDTLKHTPARPIRLIDTAPSPLLTGIIDPSGYPGILWQLARGCDFSCE
YCFDDKGERGVRRYSLERIDAELDVIVRSGVPQVFVLDSTFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKL
FAGITCSLQIGLQSADPKILRRIRRHLDPDDFRERIGLLNESGAIFGFDLIYGLPGDSLAAFRRSLDFALELYPNHLDIF
PLAILPGTILANRASSEGLEHLTAPPYTLTGSPTFTPSDLERAARLAEACDIFYTRGKAVAWFNSVASALRLSPAALLDE
FAAWLDDTRQKGERGTDLGDQDIWLMQREFLDRIFRRRKRAALLPLALDLVDYHYYFAAALVAPPPPLPTDRELSGRDLL
GAVFSLAPTARLAHFSYEIVDILEAGEVDLAAFRDCFAPSGSWAVIYPRGGDVYTEPLLESYAKFLQGLDGTGQAGAAAS
RAGLTRAEAREFLDFAAAEGIVVLATQAQ
>Mature_589_residues
MRAVLCDFFTGTAVGTCVDDILANAPDAVGFSVYLWNRDDARAVADELRRRAPGLTLFAGGPEATADPAGLLTGSSFDFL
IQGEGEIPFLDVMGRLEIGEPGRGAVGTAWLDNDTLKHTPARPIRLIDTAPSPLLTGIIDPSGYPGILWQLARGCDFSCE
YCFDDKGERGVRRYSLERIDAELDVIVRSGVPQVFVLDSTFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKL
FAGITCSLQIGLQSADPKILRRIRRHLDPDDFRERIGLLNESGAIFGFDLIYGLPGDSLAAFRRSLDFALELYPNHLDIF
PLAILPGTILANRASSEGLEHLTAPPYTLTGSPTFTPSDLERAARLAEACDIFYTRGKAVAWFNSVASALRLSPAALLDE
FAAWLDDTRQKGERGTDLGDQDIWLMQREFLDRIFRRRKRAALLPLALDLVDYHYYFAAALVAPPPPLPTDRELSGRDLL
GAVFSLAPTARLAHFSYEIVDILEAGEVDLAAFRDCFAPSGSWAVIYPRGGDVYTEPLLESYAKFLQGLDGTGQAGAAAS
RAGLTRAEAREFLDFAAAEGIVVLATQAQ

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 64734; Mature: 64734

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVLCDFFTGTAVGTCVDDILANAPDAVGFSVYLWNRDDARAVADELRRRAPGLTLFAG
CCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEC
GPEATADPAGLLTGSSFDFLIQGEGEIPFLDVMGRLEIGEPGRGAVGTAWLDNDTLKHTP
CCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC
ARPIRLIDTAPSPLLTGIIDPSGYPGILWQLARGCDFSCEYCFDDKGERGVRRYSLERID
CCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHC
AELDVIVRSGVPQVFVLDSTFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKL
CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHH
FAGITCSLQIGLQSADPKILRRIRRHLDPDDFRERIGLLNESGAIFGFDLIYGLPGDSLA
HHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHH
AFRRSLDFALELYPNHLDIFPLAILPGTILANRASSEGLEHLTAPPYTLTGSPTFTPSDL
HHHHHHHHHEEECCCCCCEEEHHHCCCHHHHCCCCCCCHHHCCCCCEEECCCCCCCHHHH
ERAARLAEACDIFYTRGKAVAWFNSVASALRLSPAALLDEFAAWLDDTRQKGERGTDLGD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
QDIWLMQREFLDRIFRRRKRAALLPLALDLVDYHYYFAAALVAPPPPLPTDRELSGRDLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
GAVFSLAPTARLAHFSYEIVDILEAGEVDLAAFRDCFAPSGSWAVIYPRGGDVYTEPLLE
HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
SYAKFLQGLDGTGQAGAAASRAGLTRAEAREFLDFAAAEGIVVLATQAQ
HHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure
MRAVLCDFFTGTAVGTCVDDILANAPDAVGFSVYLWNRDDARAVADELRRRAPGLTLFAG
CCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEC
GPEATADPAGLLTGSSFDFLIQGEGEIPFLDVMGRLEIGEPGRGAVGTAWLDNDTLKHTP
CCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC
ARPIRLIDTAPSPLLTGIIDPSGYPGILWQLARGCDFSCEYCFDDKGERGVRRYSLERID
CCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHC
AELDVIVRSGVPQVFVLDSTFNQDRERAKKVLKMIRARARHVHFHFEVRSEFIDREMAKL
CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHH
FAGITCSLQIGLQSADPKILRRIRRHLDPDDFRERIGLLNESGAIFGFDLIYGLPGDSLA
HHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHH
AFRRSLDFALELYPNHLDIFPLAILPGTILANRASSEGLEHLTAPPYTLTGSPTFTPSDL
HHHHHHHHHEEECCCCCCEEEHHHCCCHHHHCCCCCCCHHHCCCCCEEECCCCCCCHHHH
ERAARLAEACDIFYTRGKAVAWFNSVASALRLSPAALLDEFAAWLDDTRQKGERGTDLGD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
QDIWLMQREFLDRIFRRRKRAALLPLALDLVDYHYYFAAALVAPPPPLPTDRELSGRDLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
GAVFSLAPTARLAHFSYEIVDILEAGEVDLAAFRDCFAPSGSWAVIYPRGGDVYTEPLLE
HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
SYAKFLQGLDGTGQAGAAASRAGLTRAEAREFLDFAAAEGIVVLATQAQ
HHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]