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The map label for this gene is yvoA [H]

Identifier: 39995377

GI number: 39995377

Start: 274646

End: 275392

Strand: Direct

Name: yvoA [H]

Synonym: GSU0267

Alternate gene names: 39995377

Gene position: 274646-275392 (Clockwise)

Preceding gene: 39995376

Following gene: 39995378

Centisome position: 7.2

GC content: 64.66

Gene sequence:

>747_bases
GTGCTGGACCCGCACAGTCGCATGCCGTTGTATCATCAAATCGAGAGTCATCTCCGGGAGGTCATCAGGAGCGGCAAGTG
GCAGGCCGGCGAAGCGATTCCTCCCGAAAGGCTGCTGATCGAGCAGTACGGGGTCAGCCGGATCACGATCCGCCAGGCCC
TGGCAAATCTCGTGGCTGCCGGGCTGCTCTACCGGAAGCATGGGCGGGGGACTTTTGTGGCCGGCGCAAAAGAGCGGCCC
ATAACCGAGTCGCTGGCCAACCTGACGGGCCACCTGGAAGAGTTGCAGCTGCGCGGACTTGATCCCCGGGTCAGGGTGCT
GGCGCTGGAGACCCGACCCATGATCGCCGAAGTGGCTGAGGCCCTGCAGCGAAGTCCCGGCGCCGAAGGGTGGTACCTGT
ACCGGATCGTCACTGTGGAGCAGCAGCCGCTCATGCTTTCGACCGTGTGGCTTCCCTGCGACCTTGGGGTAGAGCTGAAC
GAGGAACTCCTGAAACAGCACGGCATGGCCCTGCTGCTGACCCACAACGGCATCGCTCCTCTACGCGGCAGCCAGCGGAT
CGGCGCCATGAGTGCCGGACCGGAAGAGGCGCGCCTGCTGGGGGTGCGGGCCGGTGAAGCGGTCTTGCGTGTCAGCAGGG
TCATCCACGGCGCTGCCGACCGTCCGCTCGTGTGGTTCAGGACGCTCTACCGCTCTGATCGCTACGAATACGAAGTCGAA
CTGAAGAGAGGCAGGCCGCACGCATGA

Upstream 100 bases:

>100_bases
GGCTGACTCTGTCCGATTTGAGATCCGGTCTTGTCCTCATGGGTGAAATGATGTTATGTTGTCATGACAACATAATGTTA
ACGCTGGAAAGGATGCCCGC

Downstream 100 bases:

>100_bases
TCATGACCACGCTGGAAATATTCCTGATTGCAATAACGGCCGGCGTTGCCGGCGCCATCCTGGGCCTGGGCGGGGGAATC
ATCATCGTGCCGGCCCTGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLDPHSRMPLYHQIESHLREVIRSGKWQAGEAIPPERLLIEQYGVSRITIRQALANLVAAGLLYRKHGRGTFVAGAKERP
ITESLANLTGHLEELQLRGLDPRVRVLALETRPMIAEVAEALQRSPGAEGWYLYRIVTVEQQPLMLSTVWLPCDLGVELN
EELLKQHGMALLLTHNGIAPLRGSQRIGAMSAGPEEARLLGVRAGEAVLRVSRVIHGAADRPLVWFRTLYRSDRYEYEVE
LKRGRPHA

Sequences:

>Translated_248_residues
MLDPHSRMPLYHQIESHLREVIRSGKWQAGEAIPPERLLIEQYGVSRITIRQALANLVAAGLLYRKHGRGTFVAGAKERP
ITESLANLTGHLEELQLRGLDPRVRVLALETRPMIAEVAEALQRSPGAEGWYLYRIVTVEQQPLMLSTVWLPCDLGVELN
EELLKQHGMALLLTHNGIAPLRGSQRIGAMSAGPEEARLLGVRAGEAVLRVSRVIHGAADRPLVWFRTLYRSDRYEYEVE
LKRGRPHA
>Mature_248_residues
MLDPHSRMPLYHQIESHLREVIRSGKWQAGEAIPPERLLIEQYGVSRITIRQALANLVAAGLLYRKHGRGTFVAGAKERP
ITESLANLTGHLEELQLRGLDPRVRVLALETRPMIAEVAEALQRSPGAEGWYLYRIVTVEQQPLMLSTVWLPCDLGVELN
EELLKQHGMALLLTHNGIAPLRGSQRIGAMSAGPEEARLLGVRAGEAVLRVSRVIHGAADRPLVWFRTLYRSDRYEYEVE
LKRGRPHA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=30.1724137931034, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082252, Length=242, Percent_Identity=28.099173553719, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1790118, Length=237, Percent_Identity=27.0042194092827, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788418, Length=242, Percent_Identity=26.4462809917355, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27877; Mature: 27877

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPHSRMPLYHQIESHLREVIRSGKWQAGEAIPPERLLIEQYGVSRITIRQALANLVAA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GLLYRKHGRGTFVAGAKERPITESLANLTGHLEELQLRGLDPRVRVLALETRPMIAEVAE
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHH
ALQRSPGAEGWYLYRIVTVEQQPLMLSTVWLPCDLGVELNEELLKQHGMALLLTHNGIAP
HHHHCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCC
LRGSQRIGAMSAGPEEARLLGVRAGEAVLRVSRVIHGAADRPLVWFRTLYRSDRYEYEVE
CCCCCCCCCCCCCCCHHEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEE
LKRGRPHA
ECCCCCCC
>Mature Secondary Structure
MLDPHSRMPLYHQIESHLREVIRSGKWQAGEAIPPERLLIEQYGVSRITIRQALANLVAA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GLLYRKHGRGTFVAGAKERPITESLANLTGHLEELQLRGLDPRVRVLALETRPMIAEVAE
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHH
ALQRSPGAEGWYLYRIVTVEQQPLMLSTVWLPCDLGVELNEELLKQHGMALLLTHNGIAP
HHHHCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCC
LRGSQRIGAMSAGPEEARLLGVRAGEAVLRVSRVIHGAADRPLVWFRTLYRSDRYEYEVE
CCCCCCCCCCCCCCCHHEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEE
LKRGRPHA
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]