| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is 39995358
Identifier: 39995358
GI number: 39995358
Start: 255596
End: 256882
Strand: Direct
Name: 39995358
Synonym: GSU0248
Alternate gene names: NA
Gene position: 255596-256882 (Clockwise)
Preceding gene: 39995357
Following gene: 39995359
Centisome position: 6.7
GC content: 67.91
Gene sequence:
>1287_bases ATGTCCCGTTCCCCTCGGCTGCTGCTGATCTACCCGGCGACCCACAAGCTCGGTTGGGCGCGCTATTTTCAGCTTCCCTC CCATTCGCTCCAGATGGTGGCCGCGGCCACGCCCCGCCACTGGGAGGTGATCCTGGCCGACGAGGTCCATGACGAGGTCC CCTTTGACGGAACCTTCGACCTGGTGGGGATCACGGCCATGACCCACCAGGCGACGCGGGCCTATGAGATCGCCGACCGG TTCCGGGCCCGGGGTGTCCCCGTGGTGATGGGGGGAATCCACCCCACGGTCCTGCCCGACGAGGCACTGGAGCACGCCGA CGCGGTGGTGGTGGGGGAGGCCGAGCCGGTCTGGGCGCACCTTCTCGACGACCTCCTGGCCGGGCGGCTCGCACCGGTCT ACCGGGCGCCGGTCCCCACGGACGAAATCCTCTCCGCCCCCTGGCCCCGCCGCGAGATCCTGGCTGGCCGCCGCTACCTC ACCACCCAGACGGTCCAGGCGAGCCGGGGCTGCCCCTACGACTGCTCCTTCTGCACCGTCACTCCCTACTTCGGCCGCAC CTTCCGCTACCGCGACCCCGACGACATCCTGGCAGAGATTCGCTCCTTCAGACGCAAGCTCGTGGTCTTTCTCGACGACA ACCTCCTGGGCGATCCGGCCAAGGCCCGGCCCATCCTGCGGGGGCTGGCCGAGATGAACGTCCGCTGGGGCTCCCAGACC AATCTCCGTTTTGCCGAGGACCCGGAGCTCCTGAAACTCGTGGCGGACTCGGGGTGCATCGGCCTCTTCGTGGGGATCGA GTCGGTGACCGGGGCCCACGCCAACATGGCCAAGTCCGGCACCCGTTACTCCCAGGCCGATCTCATGAAGCGGGTCCGCG ACGCCGGCATCATCCTGGAAACCTCCATCATCTTCGGTTTCGACGACCACGACGAGAGCGTCTTCGAGACCACGGTCCGC TTCCTGGAGGAGTGCTCCCCCAGCGTCCCCACCTTCCACATCCTCACCCCCTACCCCGGCACGGCCCTGTTCCGCCAGTT CCAGGAGGAGGGGCGGCTCCTGACCACCGACTGGTCCCGTTACGATCACTCTACCGTGGTCTTCCGGCCCCGTCTCATGT CTCCCGAACGGCTTCACCGGGGCTGGCTGGAGGCACGCCGTGAGGCCTACTCCTGGCGGGCCATCGCCACCCGCGTCATG CGCAATCCGGGGCGCCGCCTGACGAATTTCGCCTACAACATGCTGCGCAAGGGACCAAACGACCTGCTGGAGGATGGGGC GCCGTAG
Upstream 100 bases:
>100_bases AGCCCGAGGCCTATCTCAGGGAGTACGAGGCGACCCGGCCCCGGACAACGGAGCCCCTGGTGGATTTCAGCGCCGGGGCG TACTGCGGGGGAGCCGCCTG
Downstream 100 bases:
>100_bases GGCACCGTTCTCCTCTCGATCCGATGCGTACCCTGCCGGCATGAGGATGGAACGTCTGCCATGACCCGTTTGATTGTCTT CGGAATACTTGCGGCATTCT
Product: BchE/P-methylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MSRSPRLLLIYPATHKLGWARYFQLPSHSLQMVAAATPRHWEVILADEVHDEVPFDGTFDLVGITAMTHQATRAYEIADR FRARGVPVVMGGIHPTVLPDEALEHADAVVVGEAEPVWAHLLDDLLAGRLAPVYRAPVPTDEILSAPWPRREILAGRRYL TTQTVQASRGCPYDCSFCTVTPYFGRTFRYRDPDDILAEIRSFRRKLVVFLDDNLLGDPAKARPILRGLAEMNVRWGSQT NLRFAEDPELLKLVADSGCIGLFVGIESVTGAHANMAKSGTRYSQADLMKRVRDAGIILETSIIFGFDDHDESVFETTVR FLEECSPSVPTFHILTPYPGTALFRQFQEEGRLLTTDWSRYDHSTVVFRPRLMSPERLHRGWLEARREAYSWRAIATRVM RNPGRRLTNFAYNMLRKGPNDLLEDGAP
Sequences:
>Translated_428_residues MSRSPRLLLIYPATHKLGWARYFQLPSHSLQMVAAATPRHWEVILADEVHDEVPFDGTFDLVGITAMTHQATRAYEIADR FRARGVPVVMGGIHPTVLPDEALEHADAVVVGEAEPVWAHLLDDLLAGRLAPVYRAPVPTDEILSAPWPRREILAGRRYL TTQTVQASRGCPYDCSFCTVTPYFGRTFRYRDPDDILAEIRSFRRKLVVFLDDNLLGDPAKARPILRGLAEMNVRWGSQT NLRFAEDPELLKLVADSGCIGLFVGIESVTGAHANMAKSGTRYSQADLMKRVRDAGIILETSIIFGFDDHDESVFETTVR FLEECSPSVPTFHILTPYPGTALFRQFQEEGRLLTTDWSRYDHSTVVFRPRLMSPERLHRGWLEARREAYSWRAIATRVM RNPGRRLTNFAYNMLRKGPNDLLEDGAP >Mature_427_residues SRSPRLLLIYPATHKLGWARYFQLPSHSLQMVAAATPRHWEVILADEVHDEVPFDGTFDLVGITAMTHQATRAYEIADRF RARGVPVVMGGIHPTVLPDEALEHADAVVVGEAEPVWAHLLDDLLAGRLAPVYRAPVPTDEILSAPWPRREILAGRRYLT TQTVQASRGCPYDCSFCTVTPYFGRTFRYRDPDDILAEIRSFRRKLVVFLDDNLLGDPAKARPILRGLAEMNVRWGSQTN LRFAEDPELLKLVADSGCIGLFVGIESVTGAHANMAKSGTRYSQADLMKRVRDAGIILETSIIFGFDDHDESVFETTVRF LEECSPSVPTFHILTPYPGTALFRQFQEEGRLLTTDWSRYDHSTVVFRPRLMSPERLHRGWLEARREAYSWRAIATRVMR NPGRRLTNFAYNMLRKGPNDLLEDGAP
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 48448; Mature: 48317
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSPRLLLIYPATHKLGWARYFQLPSHSLQMVAAATPRHWEVILADEVHDEVPFDGTFD CCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCH LVGITAMTHQATRAYEIADRFRARGVPVVMGGIHPTVLPDEALEHADAVVVGEAEPVWAH HEEHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCEEEECCCCHHHHH LLDDLLAGRLAPVYRAPVPTDEILSAPWPRREILAGRRYLTTQTVQASRGCPYDCSFCTV HHHHHHHHHCCHHHCCCCCHHHHHCCCCCHHHHHCCCCEEEEHHHHHCCCCCCCCCEEEE TPYFGRTFRYRDPDDILAEIRSFRRKLVVFLDDNLLGDPAKARPILRGLAEMNVRWGSQT CCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCEECCCCC NLRFAEDPELLKLVADSGCIGLFVGIESVTGAHANMAKSGTRYSQADLMKRVRDAGIILE CCEECCCHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEE TSIIFGFDDHDESVFETTVRFLEECSPSVPTFHILTPYPGTALFRQFQEEGRLLTTDWSR EEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCC YDHSTVVFRPRLMSPERLHRGWLEARREAYSWRAIATRVMRNPGRRLTNFAYNMLRKGPN CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH DLLEDGAP HHHHCCCC >Mature Secondary Structure SRSPRLLLIYPATHKLGWARYFQLPSHSLQMVAAATPRHWEVILADEVHDEVPFDGTFD CCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCH LVGITAMTHQATRAYEIADRFRARGVPVVMGGIHPTVLPDEALEHADAVVVGEAEPVWAH HEEHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCEEEECCCCHHHHH LLDDLLAGRLAPVYRAPVPTDEILSAPWPRREILAGRRYLTTQTVQASRGCPYDCSFCTV HHHHHHHHHCCHHHCCCCCHHHHHCCCCCHHHHHCCCCEEEEHHHHHCCCCCCCCCEEEE TPYFGRTFRYRDPDDILAEIRSFRRKLVVFLDDNLLGDPAKARPILRGLAEMNVRWGSQT CCCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCEECCCCC NLRFAEDPELLKLVADSGCIGLFVGIESVTGAHANMAKSGTRYSQADLMKRVRDAGIILE CCEECCCHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEE TSIIFGFDDHDESVFETTVRFLEECSPSVPTFHILTPYPGTALFRQFQEEGRLLTTDWSR EEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCC YDHSTVVFRPRLMSPERLHRGWLEARREAYSWRAIATRVMRNPGRRLTNFAYNMLRKGPN CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH DLLEDGAP HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]