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The map label for this gene is ddpC [H]

Identifier: 38234707

GI number: 38234707

Start: 2237423

End: 2238244

Strand: Direct

Name: ddpC [H]

Synonym: DIP2164

Alternate gene names: 38234707

Gene position: 2237423-2238244 (Clockwise)

Preceding gene: 38234706

Following gene: 38234708

Centisome position: 89.91

GC content: 59.85

Gene sequence:

>822_bases
ATGATTCACCTTCGCCGCCCATCCCTGCACACCGTCACCACCTCTGCGTTATGGCTGCTGTGGATTCTTACACTTATCGC
AGCCATCGCCGGCCCCACCGTGGCTACCCTGCTAGGCACACCTGACCCTAGCCAGACAATGACGCGCTCCTTCGATCCCC
CATCCACGCTACACCCCCTTGGAACCGACCGCCTTGGCAGAGATCTTCTGGCACGTATGCTCAGCGGCAACATTGGGCTC
GTTATTCCCCCAGCCATCGCCGCGGTGATCGCCACTGCTATCGGTTTATTGCTGGCGTTGGTGGCGTCGATAAGCCCGCT
ACTGCGCGCCATCATCCGGTTTTTCGGCGATATTGTGCTGGTCATCCCCGCAATGATTATTCTGCTCGCCGTCATTACCG
CCGCCGAAGGCAGCTTTCTTGCCGTAGCCACCGCCACCGTCGCATTATCCGTACCGCTATCAACCCGCTACTTCATCGCC
GCAGCCCGCCCCATCTTCGCCGCCGACTACGTAATCCGTGCACGCGCCACCGGCAGCACATGGCCACAGATCATAGGGCA
ACACATTCTTCCCGCTCTGCGTCGCCCCATCATCGCAGACATCGGTATTCGCTTTGTCACGGTCGTATTCTTAACCGCTA
CCGCAGCTTTTCTCGCCGGAACCTCTGGTGCACAGGAGAATTCGTGGGCGGCCATGGTAAGCAGCGGACTTAACGGTGTG
GACCTCAACCCGTGGGCGGTTATCGCCCCCGTAGTCGCTATCATTGCATTGACAGCCTGCCCAGCGCTGCTGCTCGAACA
GCACACCGGAGGCCGTCGATGA

Upstream 100 bases:

>100_bases
AAACCATCGCCGTGGCAACGCTCACCGCAGTGTTTGCTGCCATTACCATCGCAGCGTTCACCTTGGCTGATCTCCACCAC
GACATCCAAGGACGCCGCGC

Downstream 100 bases:

>100_bases
TCGAACTGACCATAACGAATGCCACCATTACCGCAGGTGACACCCCGCTGTTGACCAATGCGTCCCTGCACGTTGGTTCT
GGGGAATGCGTTGCCCTCAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MIHLRRPSLHTVTTSALWLLWILTLIAAIAGPTVATLLGTPDPSQTMTRSFDPPSTLHPLGTDRLGRDLLARMLSGNIGL
VIPPAIAAVIATAIGLLLALVASISPLLRAIIRFFGDIVLVIPAMIILLAVITAAEGSFLAVATATVALSVPLSTRYFIA
AARPIFAADYVIRARATGSTWPQIIGQHILPALRRPIIADIGIRFVTVVFLTATAAFLAGTSGAQENSWAAMVSSGLNGV
DLNPWAVIAPVVAIIALTACPALLLEQHTGGRR

Sequences:

>Translated_273_residues
MIHLRRPSLHTVTTSALWLLWILTLIAAIAGPTVATLLGTPDPSQTMTRSFDPPSTLHPLGTDRLGRDLLARMLSGNIGL
VIPPAIAAVIATAIGLLLALVASISPLLRAIIRFFGDIVLVIPAMIILLAVITAAEGSFLAVATATVALSVPLSTRYFIA
AARPIFAADYVIRARATGSTWPQIIGQHILPALRRPIIADIGIRFVTVVFLTATAAFLAGTSGAQENSWAAMVSSGLNGV
DLNPWAVIAPVVAIIALTACPALLLEQHTGGRR
>Mature_273_residues
MIHLRRPSLHTVTTSALWLLWILTLIAAIAGPTVATLLGTPDPSQTMTRSFDPPSTLHPLGTDRLGRDLLARMLSGNIGL
VIPPAIAAVIATAIGLLLALVASISPLLRAIIRFFGDIVLVIPAMIILLAVITAAEGSFLAVATATVALSVPLSTRYFIA
AARPIFAADYVIRARATGSTWPQIIGQHILPALRRPIIADIGIRFVTVVFLTATAAFLAGTSGAQENSWAAMVSSGLNGV
DLNPWAVIAPVVAIIALTACPALLLEQHTGGRR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=226, Percent_Identity=31.858407079646, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787549, Length=198, Percent_Identity=29.2929292929293, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28602; Mature: 28602

Theoretical pI: Translated: 11.64; Mature: 11.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHLRRPSLHTVTTSALWLLWILTLIAAIAGPTVATLLGTPDPSQTMTRSFDPPSTLHPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCCCCCCCCCCCC
GTDRLGRDLLARMLSGNIGLVIPPAIAAVIATAIGLLLALVASISPLLRAIIRFFGDIVL
CHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPAMIILLAVITAAEGSFLAVATATVALSVPLSTRYFIAAARPIFAADYVIRARATGST
HHHHHHHHHHHHHHCCCCEEHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHEECCCCCH
WPQIIGQHILPALRRPIIADIGIRFVTVVFLTATAAFLAGTSGAQENSWAAMVSSGLNGV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
DLNPWAVIAPVVAIIALTACPALLLEQHTGGRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIHLRRPSLHTVTTSALWLLWILTLIAAIAGPTVATLLGTPDPSQTMTRSFDPPSTLHPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCCCCCCCCCCCC
GTDRLGRDLLARMLSGNIGLVIPPAIAAVIATAIGLLLALVASISPLLRAIIRFFGDIVL
CHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPAMIILLAVITAAEGSFLAVATATVALSVPLSTRYFIAAARPIFAADYVIRARATGST
HHHHHHHHHHHHHHCCCCEEHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHEECCCCCH
WPQIIGQHILPALRRPIIADIGIRFVTVVFLTATAAFLAGTSGAQENSWAAMVSSGLNGV
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
DLNPWAVIAPVVAIIALTACPALLLEQHTGGRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]