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The map label for this gene is ddpA [H]

Identifier: 38234705

GI number: 38234705

Start: 2234961

End: 2236460

Strand: Direct

Name: ddpA [H]

Synonym: DIP2162

Alternate gene names: 38234705

Gene position: 2234961-2236460 (Clockwise)

Preceding gene: 38234700

Following gene: 38234706

Centisome position: 89.81

GC content: 59.8

Gene sequence:

>1500_bases
ATGCTCCGCAGAGATTTCCTCAAACTCCTCGCCGCAGCGACCACCATCGCCGCCACCGGCCCCGTCATGGCCGCGTGCTC
CCGCGACGACAACTCCGCAACCAGTGGAAAAGCAGCAACCGACACCATTCGCATTGCCGCAATCGGCGGACCAGGCGAAG
GCCTCAACATCAACGAAGCCATGTCCACCGCCACGTGGGCTGCCATGTACGCCGTCTATGAATCCCTTGTGATCGCAGGC
GATAGCGCACCCGCCTTCCAGTTAGCCAAGAGCGTCGAGCCCAACAAAGATGCCACCATGTGGACGGTCACTCTCCGCGA
CGCACCACTATTTTCCGACGGCTCCCCCGTCACCGCAGCCGATGTTGTCGCCTCTTTGAAAGTGGTGGCCAAAAACCCCA
TGCGCGGCATGACCTATGCCGATGTCGACGTGGACAAGCTCAAGGCTATCGACGACTCCACCGTAGAAATCCACCTCACC
CGCCCCCGCGCCGACTTTGTTGATGCCGTGCTCGGCGTGAACTCACTGGTGTACAAAAACGGCGATCCCGGCACCACCAT
CGGCTCCGGCCCCTATGTAGTAGAATCCGGCGACTCCGGCCAGGGATGGAAACTGGCAGCTAATGAGCATTTCCCCACGG
ATCGTCGGATCTCCCAATCCCTAGAGATTCAAGTTATTGCCGATGCCGACGCACGCCTGCGCGCCGTGGATAGCGGTGCC
GTGGATCTGGCCATGGATCTTCCCGCAACAGCAGCCCGCAGCCTGAAAAACGCACAAGCGTGGATCCCAGGCCCCGCCGA
TTCCAAAGCCTTGTTGTTCGTGCTCAACACCGCAGTAGCACCGTTTAACGACGCCGAGGTGCGCCGCGCTGTCAAGATCT
CCCTCGACCGTAAGGCCATGGTCGACGTCGCCTTGGATGGTGCCGGCACCGTCGGCGCAGATATTCCAGGTTTTGGATTC
AAGGACTACCCCGAAGGAATCTCCGAGGTGCGCCGTGACCTCGACGCGGCGCGACAGATCTTCAAGGATAAGGGCATTAA
AGAGCTCACCTTGGTCACCGCCGATTTCACCCCTGGCATGAACGACGGTGCCGACATCGCCGCCAAGCAGCTCGCGGATG
CAGGAGTCAAGGTGACTGTGGAAAAGCGCGACCCCACCACCTACTTTGCCGATATGGCTGCGCTGCGCGCGTTGCCATTT
TTCGCTTCCTACATTGTGAACCGCTCCTTGCAGTCGGCATTGCCGTTTATGACCGGTTCCCACGCCATGTTCAACTTGTC
TGGCTTTGGCACCTCCGGCGATTGGGATAAGCGCTTGGCTGCAGCACAGGCAGAAACCAACGATTCCCAGCGCGCAGCAT
TGCTCAAAAAGCTTGCTGTTGAGATGCAGCGCGATGGTGGCGATGTGTTGTGGGGCTACGCAAATGAGGTCCACGGGCGT
GCCGACGGCATCCCTGACGTGCCGGTTTCTCAAAGCGTCCCTGTTCCTACCACCAAGTAA

Upstream 100 bases:

>100_bases
CATGACATTTACTGCGTCACATCACCGCCCCCGAGAGCACTTCGGGTTGCCCTAGCCACCCCACCACTCATTCCCACCAC
GAAAGGACACCGAACCACAC

Downstream 100 bases:

>100_bases
TCCCACGGTATCGTGCCACATCTGTCCCACCGCGCTTCGTCCATCATTCGCCTCGCACTGCGCGCACCGGTCTTGCTGGT
AGCCGCAGCGATGACGAGTT

Product: ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MLRRDFLKLLAAATTIAATGPVMAACSRDDNSATSGKAATDTIRIAAIGGPGEGLNINEAMSTATWAAMYAVYESLVIAG
DSAPAFQLAKSVEPNKDATMWTVTLRDAPLFSDGSPVTAADVVASLKVVAKNPMRGMTYADVDVDKLKAIDDSTVEIHLT
RPRADFVDAVLGVNSLVYKNGDPGTTIGSGPYVVESGDSGQGWKLAANEHFPTDRRISQSLEIQVIADADARLRAVDSGA
VDLAMDLPATAARSLKNAQAWIPGPADSKALLFVLNTAVAPFNDAEVRRAVKISLDRKAMVDVALDGAGTVGADIPGFGF
KDYPEGISEVRRDLDAARQIFKDKGIKELTLVTADFTPGMNDGADIAAKQLADAGVKVTVEKRDPTTYFADMAALRALPF
FASYIVNRSLQSALPFMTGSHAMFNLSGFGTSGDWDKRLAAAQAETNDSQRAALLKKLAVEMQRDGGDVLWGYANEVHGR
ADGIPDVPVSQSVPVPTTK

Sequences:

>Translated_499_residues
MLRRDFLKLLAAATTIAATGPVMAACSRDDNSATSGKAATDTIRIAAIGGPGEGLNINEAMSTATWAAMYAVYESLVIAG
DSAPAFQLAKSVEPNKDATMWTVTLRDAPLFSDGSPVTAADVVASLKVVAKNPMRGMTYADVDVDKLKAIDDSTVEIHLT
RPRADFVDAVLGVNSLVYKNGDPGTTIGSGPYVVESGDSGQGWKLAANEHFPTDRRISQSLEIQVIADADARLRAVDSGA
VDLAMDLPATAARSLKNAQAWIPGPADSKALLFVLNTAVAPFNDAEVRRAVKISLDRKAMVDVALDGAGTVGADIPGFGF
KDYPEGISEVRRDLDAARQIFKDKGIKELTLVTADFTPGMNDGADIAAKQLADAGVKVTVEKRDPTTYFADMAALRALPF
FASYIVNRSLQSALPFMTGSHAMFNLSGFGTSGDWDKRLAAAQAETNDSQRAALLKKLAVEMQRDGGDVLWGYANEVHGR
ADGIPDVPVSQSVPVPTTK
>Mature_499_residues
MLRRDFLKLLAAATTIAATGPVMAACSRDDNSATSGKAATDTIRIAAIGGPGEGLNINEAMSTATWAAMYAVYESLVIAG
DSAPAFQLAKSVEPNKDATMWTVTLRDAPLFSDGSPVTAADVVASLKVVAKNPMRGMTYADVDVDKLKAIDDSTVEIHLT
RPRADFVDAVLGVNSLVYKNGDPGTTIGSGPYVVESGDSGQGWKLAANEHFPTDRRISQSLEIQVIADADARLRAVDSGA
VDLAMDLPATAARSLKNAQAWIPGPADSKALLFVLNTAVAPFNDAEVRRAVKISLDRKAMVDVALDGAGTVGADIPGFGF
KDYPEGISEVRRDLDAARQIFKDKGIKELTLVTADFTPGMNDGADIAAKQLADAGVKVTVEKRDPTTYFADMAALRALPF
FASYIVNRSLQSALPFMTGSHAMFNLSGFGTSGDWDKRLAAAQAETNDSQRAALLKKLAVEMQRDGGDVLWGYANEVHGR
ADGIPDVPVSQSVPVPTTK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=343, Percent_Identity=27.6967930029155, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1789887, Length=259, Percent_Identity=27.7992277992278, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081878, Length=400, Percent_Identity=24.25, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 52726; Mature: 52726

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRDFLKLLAAATTIAATGPVMAACSRDDNSATSGKAATDTIRIAAIGGPGEGLNINEA
CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHH
MSTATWAAMYAVYESLVIAGDSAPAFQLAKSVEPNKDATMWTVTLRDAPLFSDGSPVTAA
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHH
DVVASLKVVAKNPMRGMTYADVDVDKLKAIDDSTVEIHLTRPRADFVDAVLGVNSLVYKN
HHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEC
GDPGTTIGSGPYVVESGDSGQGWKLAANEHFPTDRRISQSLEIQVIADADARLRAVDSGA
CCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCHHHCCCEEEEEEECCCCEEEEECCCC
VDLAMDLPATAARSLKNAQAWIPGPADSKALLFVLNTAVAPFNDAEVRRAVKISLDRKAM
EEEEECCCHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCCCHHHHHEEEEEECCCCEE
VDVALDGAGTVGADIPGFGFKDYPEGISEVRRDLDAARQIFKDKGIKELTLVTADFTPGM
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
NDGADIAAKQLADAGVKVTVEKRDPTTYFADMAALRALPFFASYIVNRSLQSALPFMTGS
CCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HAMFNLSGFGTSGDWDKRLAAAQAETNDSQRAALLKKLAVEMQRDGGDVLWGYANEVHGR
CEEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
ADGIPDVPVSQSVPVPTTK
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRRDFLKLLAAATTIAATGPVMAACSRDDNSATSGKAATDTIRIAAIGGPGEGLNINEA
CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHH
MSTATWAAMYAVYESLVIAGDSAPAFQLAKSVEPNKDATMWTVTLRDAPLFSDGSPVTAA
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHH
DVVASLKVVAKNPMRGMTYADVDVDKLKAIDDSTVEIHLTRPRADFVDAVLGVNSLVYKN
HHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEC
GDPGTTIGSGPYVVESGDSGQGWKLAANEHFPTDRRISQSLEIQVIADADARLRAVDSGA
CCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCHHHCCCEEEEEEECCCCEEEEECCCC
VDLAMDLPATAARSLKNAQAWIPGPADSKALLFVLNTAVAPFNDAEVRRAVKISLDRKAM
EEEEECCCHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCCCHHHHHEEEEEECCCCEE
VDVALDGAGTVGADIPGFGFKDYPEGISEVRRDLDAARQIFKDKGIKELTLVTADFTPGM
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
NDGADIAAKQLADAGVKVTVEKRDPTTYFADMAALRALPFFASYIVNRSLQSALPFMTGS
CCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HAMFNLSGFGTSGDWDKRLAAAQAETNDSQRAALLKKLAVEMQRDGGDVLWGYANEVHGR
CEEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
ADGIPDVPVSQSVPVPTTK
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]